Rmu_sc0003764.1_g000001

Benzyl alcohol

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003764.1
Physical Location & Seq
Forward (+)
1711 .. 2086
376 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003764.1_g000001.1.cds

Sequence Viewer

Length: 246 bp
atggcgttgccatgctccttagcatttcaggttaatcgaacccagccacaacttataactccggcaaggccaactccacgtgaaacaaagatgctgtcagacatagatgaccagcaaggccttaggctcaaggaagggcctaacaaaaagcttatggtggattgcaccggagaaggtgtcttgttcgttgaggctaatgctgacattactctcgaggaaattgtagatgctattcgacccccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

81

Amino Acids

8.95

Weight (kDa)

4.76

Isoelectric Point (pI)

36.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000190)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03480 AT5G17540
fragaria_vesca FvH4_2g12510 FvH4_3g38880 FvH4_3g40890 FvH4_5g24240 FvH4_5g24250 FvH4_5g24270 FvH4_5g24273 FvH4_6g05391 FvH4_6g05392
malus_domestica MD00G1201900.v1.1 MD00G1202100.v1.1 MD02G1001400.v1.1 MD02G1013900.v1.1 MD02G1014800.v1.1 MD02G1015000.v1.1 MD02G1015200.v1.1 MD03G1080200.v1.1 MD06G1016200.v1.1 MD06G1016500.v1.1 MD06G1017700.v1.1 MD06G1018100.v1.1 MD06G1018200.v1.1 MD06G1018400.v1.1 MD06G1018700.v1.1 MD06G1018800.v1.1 MD06G1019000.v1.1 MD06G1019100.v1.1 MD06G1019300.v1.1 MD06G1019800.v1.1 MD06G1020400.v1.1 MD06G1020700.v1.1 MD06G1020800.v1.1 MD06G1020900.v1.1 MD12G1038300.v1.1 MD12G1039400.v1.1
prunus_persica Prupe.5G017800_v2.0.a1 Prupe.5G017900_v2.0.a1 Prupe.5G018000_v2.0.a1 Prupe.5G018100_v2.0.a1 Prupe.5G018200_v2.0.a1 Prupe.8G000100_v2.0.a1
pyrus_communis pycom02g01330 pycom02g01390 pycom03g06420 pycom06g01300 pycom06g01320 pycom06g01340 pycom06g01500 pycom06g01510 pycom06g01520 pycom12g03300 pycom12g03320
rosa_chinensis RchiOBHm_Chr5g0051841 RchiOBHm_Chr6g0272991 RchiOBHm_Chr7g0213951 RchiOBHm_Chr7g0214051 RchiOBHm_Chr7g0214131 RchiOBHm_Chr7g0214161 RchiOBHm_Chr7g0214231 RchiOBHm_Chr7g0214321 RchiOBHm_Chr7g0214351 RchiOBHm_Chr7g0214391 RchiOBHm_Chr7g0214451 RchiOBHm_Chr7g0222591
rosa_laevigata RLG00000002044 RLG00000002744 RLG00000002751 RLG00000002752 RLG00000002755 RLG00000002756 RLG00000002757 RLG00000002758 RLG00000002762 RLG00000002763 RLG00000013652
rosa_multiflora Rmu_sc0000328.1_g000008 Rmu_sc0003764.1_g000001 Rmu_sc0003764.1_g000002 Rmu_sc0004199.1_g000004 Rmu_sc0004199.1_g000006 Rmu_sc0004199.1_g000014 Rmu_sc0004199.1_g000019 Rmu_sc0004199.1_g000022 Rmu_sc0005063.1_g000018 Rmu_sc0006422.1_g000030 Rmu_sc0006422.1_g000031 Rmu_sc0009579.1_g000011 Rmu_sc0009579.1_g000017 Rmu_sc0016182.1_g000005 Rmu_sc0016182.1_g000007 Rmu_sc0016279.1_g000002 Rmu_ssc0000387.1_g000031
rosa_roxburghii Rroxscaffold_1G00027390 Rroxscaffold_2G00146810 Rroxscaffold_3G00236600 Rroxscaffold_3G00236620 Rroxscaffold_3G00245350 Rroxscaffold_3G00245400 Rroxscaffold_3G00245440 Rroxscaffold_3G00245480 Rroxscaffold_3G00245560 Rroxscaffold_7G00195770
rosa_rugosa Rorug02G0047800 Rorug02G0047900 Rorug05G0276800 Rorug06G0071900 Rorug07G0145400 Rorug07G0145500 Rorug07G0145600 Rorug07G0145700 Rorug07G0145700 Rorug07G0145800 Rorug07G0211200
rosa_samantha Rh5BG359700 Rh6AG187600 Rh6DG181500 Rh7AG278000 Rh7AG278900 Rh7AG279800 Rh7AG279900 Rh7AG280100 Rh7AG280400 Rh7AG280700 Rh7AG281200 Rh7AG354300 Rh7AG354800 Rh7BG272300 Rh7BG272500 Rh7BG272600 Rh7BG272700 Rh7BG272800 Rh7BG273000 Rh7BG343200 Rh7CG297000 Rh7CG297900 Rh7CG298100 Rh7CG298800 Rh7CG299100 Rh7CG299300 Rh7CG299400 Rh7CG300000 Rh7CG300200 Rh7CG300600 Rh7CG371800 Rh7CG371900
rosa_wichuraiana Rw5G032880 Rw6G016270 Rw7G023930 Rw7G023980 Rw7G023990 Rw7G024000 Rw7G024010 Rw7G024020 Rw7G024030 Rw7G029800 Rw7G030090 Rw7G030140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 56
AcvI CACGTG 1 cut(s) 80
AluBI AGCT 1 cut(s) 151
AluI AGCT 1 cut(s) 151
Ama87I CYCGRG 1 cut(s) 212
AoxI GGCC 3 cut(s) 68, 118, 137
ArsI GACNNNNNNTTYG 2 cut(s) 80, 112
AspS9I GGNCC 1 cut(s) 137
AvaI CYCGRG 1 cut(s) 212
AxyI CCTNAGG 1 cut(s) 122
BbrPI CACGTG 1 cut(s) 80
BmeT110I CYCGRG 1 cut(s) 212
BmgT120I GGNCC 1 cut(s) 137
BmsI GCATC 2 cut(s) 81, 217
Bpu10I CCTNAGC 1 cut(s) 19
BpuEI CTTGAG 1 cut(s) 113
BsaAI YACGTR 1 cut(s) 80
BsaWI WCCGGW 1 cut(s) 167
BsaXI ACNNNNNCTCC 2 cut(s) 162, 192
Bse21I CCTNAGG 1 cut(s) 122
BseYI CCCAGC 1 cut(s) 42
BshFI GGCC 3 cut(s) 70, 120, 139
BsiHKCI CYCGRG 1 cut(s) 212
BsiSI CCGG 2 cut(s) 62, 168
BsnI GGCC 3 cut(s) 70, 120, 139
BsoBI CYCGRG 1 cut(s) 212
BspANI GGCC 3 cut(s) 70, 120, 139
BstBAI YACGTR 1 cut(s) 80
BstDEI CTNAG 2 cut(s) 19, 122
Bsu36I CCTNAGG 1 cut(s) 122
BsuRI GGCC 3 cut(s) 70, 120, 139
Cfr13I GGNCC 1 cut(s) 137
CviAII CATG 1 cut(s) 12
CviJI RGCY 7 cut(s) 46, 70, 120, 127, 139, 151, 194
CviKI_1 RGCY 7 cut(s) 46, 70, 120, 127, 139, 151, 194
DdeI CTNAG 2 cut(s) 19, 122
Eco147I AGGCCT 1 cut(s) 120
Eco72I CACGTG 1 cut(s) 80
Eco81I CCTNAGG 1 cut(s) 122
Eco88I CYCGRG 1 cut(s) 212
EcoO109I RGGNCCY 1 cut(s) 137
FaeI CATG 1 cut(s) 15
FaiI YATR 4 cut(s) 13, 56, 104, 155
FatI CATG 1 cut(s) 11
GsaI CCCAGC 1 cut(s) 46
HaeIII GGCC 3 cut(s) 70, 120, 139
HapII CCGG 2 cut(s) 62, 168
Hin1II CATG 1 cut(s) 15
HindIII AAGCTT 1 cut(s) 149
HpaII CCGG 2 cut(s) 62, 168
Hpy188I TCNGA 1 cut(s) 100
Hpy188III TCNNGA 1 cut(s) 212
HpyAV CCTTC 2 cut(s) 128, 167
HpyCH4IV ACGT 1 cut(s) 79
HpyCH4V TGCA 1 cut(s) 165
HpyF3I CTNAG 2 cut(s) 19, 122
HpySE526I ACGT 1 cut(s) 79
Hsp92II CATG 1 cut(s) 15
LmnI GCTCC 1 cut(s) 20
LpnPI CCDG 5 cut(s) 14, 56, 75, 125, 181
LweI GCATC 2 cut(s) 81, 217
MaeII ACGT 1 cut(s) 79
MluCI AATT 1 cut(s) 219
MnlI CCTC 2 cut(s) 184, 208
MseI TTAA 1 cut(s) 33
MspI CCGG 2 cut(s) 62, 168
NlaIII CATG 1 cut(s) 15
PaeR7I CTCGAG 1 cut(s) 212
PceI AGGCCT 1 cut(s) 120
PmaCI CACGTG 1 cut(s) 80
PmlI CACGTG 1 cut(s) 80
Ppu21I YACGTR 1 cut(s) 80
PsiI TTATAA 1 cut(s) 56
PspCI CACGTG 1 cut(s) 80
PspFI CCCAGC 1 cut(s) 42
PspPI GGNCC 1 cut(s) 137
SaqAI TTAA 1 cut(s) 33
Sau96I GGNCC 1 cut(s) 137
SetI ASST 4 cut(s) 33, 82, 153, 178
SfaNI GCATC 2 cut(s) 81, 217
Sfr274I CTCGAG 1 cut(s) 212
SlaI CTCGAG 1 cut(s) 212
SmlI CTYRAG 2 cut(s) 128, 212
SmoI CTYRAG 2 cut(s) 128, 212
Sse9I AATT 1 cut(s) 219
SseBI AGGCCT 1 cut(s) 120
StuI AGGCCT 1 cut(s) 120
TaiI ACGT 1 cut(s) 82
TaqI TCGA 3 cut(s) 37, 213, 235
TasI AATT 1 cut(s) 219
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
XhoI CTCGAG 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.