Prupe.5G018000_v2.0.a1

Benzyl alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000190
Physical Location & Seq
Forward (+)
1936041 .. 1937728
1688 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G018000.1

Sequence Viewer

Length: 966 bp
ATGGCAGATTTTATCGCGGTTGAGCTAGAAAAAGGACGTAGTGGGAATATACAACAGGTAACGCGCCTAACATGTGGAGGCTTCATCCTTGGATTGCGGGTAAACCACACAATATGTGAATGTGACGCAGTAGGGTTGGCCCAATTCTTGAACGCAATTGGGGAGATGGCCAAAGGAGCAGATTCACCATCAATTCCACCACTGTGGGCACAAGAGCTCCTCAATGCCATAGATCCACCGACAATTACACTTCCGCATTACGAATATGAGCAATTGCTTGATTCACAAGGCTCCTTCATTATAGACCAATCAGACATGGCCCAACGATCCTTTTATTTCGGTCCACAGCAGATTACAGCCCTCAGGAAACATCTTCCACCCCACCTTTCCACTTGCTCCTCATTTGAGCTCATAACAGCCTGCATCTGGAAGTGTCGAACGCTTTCACTGAGACTGAATCCAAAAGACACTGTTCGCCTTTCCTGCATCATCAACGCCCGCGGGAAGCGCATGGATGACCTATGTCTCCCCTTGGGATTCTACGGCAATGCATTGGGTGTCCCGACTATCGTTTCAACGGTAGAACTTGTGTGTGCAAGTCCACTGGGATATGGTGTGGAGTTGGTGAGGAAGAACAAAGCTCAGATGGGTAAAGAATACATGCAATCACTGGCCCATTTTTTGGTGATCAGAGGACGGCCTCCGCCTCCAATGGCTTGGAATGTGTTTATAGTTTCTGATAATAGACACACTGGTTTGGGAGAGTTTGATGTTGGGTGGGGAAGACCAGTATATGCTGGACTTGCGAGGGCAGTCCATGTGATCAGCTTCTATGTCCGAGAAAACAACCAAGAAGAGGAATTTAGAATTTTGGTGCCCATATGCTTGCCAAGAATGTGTTTGGAGAGGTTTGAGCAGGAGCTCAAGAGGATGATATTGGAGCACGTCGATGATGTATCTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

322

Amino Acids

35.96

Weight (kDa)

6.46

Isoelectric Point (pI)

50.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000190)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03480 AT5G17540
fragaria_vesca FvH4_2g12510 FvH4_3g38880 FvH4_3g40890 FvH4_5g24240 FvH4_5g24250 FvH4_5g24270 FvH4_5g24273 FvH4_6g05391 FvH4_6g05392
malus_domestica MD00G1201900.v1.1 MD00G1202100.v1.1 MD02G1001400.v1.1 MD02G1013900.v1.1 MD02G1014800.v1.1 MD02G1015000.v1.1 MD02G1015200.v1.1 MD03G1080200.v1.1 MD06G1016200.v1.1 MD06G1016500.v1.1 MD06G1017700.v1.1 MD06G1018100.v1.1 MD06G1018200.v1.1 MD06G1018400.v1.1 MD06G1018700.v1.1 MD06G1018800.v1.1 MD06G1019000.v1.1 MD06G1019100.v1.1 MD06G1019300.v1.1 MD06G1019800.v1.1 MD06G1020400.v1.1 MD06G1020700.v1.1 MD06G1020800.v1.1 MD06G1020900.v1.1 MD12G1038300.v1.1 MD12G1039400.v1.1
prunus_persica Prupe.5G017800_v2.0.a1 Prupe.5G017900_v2.0.a1 Prupe.5G018000_v2.0.a1 Prupe.5G018100_v2.0.a1 Prupe.5G018200_v2.0.a1 Prupe.8G000100_v2.0.a1
pyrus_communis pycom02g01330 pycom02g01390 pycom03g06420 pycom06g01300 pycom06g01320 pycom06g01340 pycom06g01500 pycom06g01510 pycom06g01520 pycom12g03300 pycom12g03320
rosa_chinensis RchiOBHm_Chr5g0051841 RchiOBHm_Chr6g0272991 RchiOBHm_Chr7g0213951 RchiOBHm_Chr7g0214051 RchiOBHm_Chr7g0214131 RchiOBHm_Chr7g0214161 RchiOBHm_Chr7g0214231 RchiOBHm_Chr7g0214321 RchiOBHm_Chr7g0214351 RchiOBHm_Chr7g0214391 RchiOBHm_Chr7g0214451 RchiOBHm_Chr7g0222591
rosa_laevigata RLG00000002044 RLG00000002744 RLG00000002751 RLG00000002752 RLG00000002755 RLG00000002756 RLG00000002757 RLG00000002758 RLG00000002762 RLG00000002763 RLG00000013652
rosa_multiflora Rmu_sc0000328.1_g000008 Rmu_sc0003764.1_g000001 Rmu_sc0003764.1_g000002 Rmu_sc0004199.1_g000004 Rmu_sc0004199.1_g000006 Rmu_sc0004199.1_g000014 Rmu_sc0004199.1_g000019 Rmu_sc0004199.1_g000022 Rmu_sc0005063.1_g000018 Rmu_sc0006422.1_g000030 Rmu_sc0006422.1_g000031 Rmu_sc0009579.1_g000011 Rmu_sc0009579.1_g000017 Rmu_sc0016182.1_g000005 Rmu_sc0016182.1_g000007 Rmu_sc0016279.1_g000002 Rmu_ssc0000387.1_g000031
rosa_roxburghii Rroxscaffold_1G00027390 Rroxscaffold_2G00146810 Rroxscaffold_3G00236600 Rroxscaffold_3G00236620 Rroxscaffold_3G00245350 Rroxscaffold_3G00245400 Rroxscaffold_3G00245440 Rroxscaffold_3G00245480 Rroxscaffold_3G00245560 Rroxscaffold_7G00195770
rosa_rugosa Rorug02G0047800 Rorug02G0047900 Rorug05G0276800 Rorug06G0071900 Rorug07G0145400 Rorug07G0145500 Rorug07G0145600 Rorug07G0145700 Rorug07G0145700 Rorug07G0145800 Rorug07G0211200
rosa_samantha Rh5BG359700 Rh6AG187600 Rh6DG181500 Rh7AG278000 Rh7AG278900 Rh7AG279800 Rh7AG279900 Rh7AG280100 Rh7AG280400 Rh7AG280700 Rh7AG281200 Rh7AG354300 Rh7AG354800 Rh7BG272300 Rh7BG272500 Rh7BG272600 Rh7BG272700 Rh7BG272800 Rh7BG273000 Rh7BG343200 Rh7CG297000 Rh7CG297900 Rh7CG298100 Rh7CG298800 Rh7CG299100 Rh7CG299300 Rh7CG299400 Rh7CG300000 Rh7CG300200 Rh7CG300600 Rh7CG371800 Rh7CG371900
rosa_wichuraiana Rw5G032880 Rw6G016270 Rw7G023930 Rw7G023980 Rw7G023990 Rw7G024000 Rw7G024010 Rw7G024020 Rw7G024030 Rw7G029800 Rw7G030090 Rw7G030140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 874
AccB7I CCANNNNNTGG 1 cut(s) 682
AccII CGCG 3 cut(s) 17, 64, 501
AciI CCGC 6 cut(s) 17, 97, 254, 499, 501, 704
AclWI GGATC 2 cut(s) 227, 321
AcoI YGGCCR 1 cut(s) 168
AcsI RAATTY 2 cut(s) 860, 867
AfiI CCNNNNNNNGG 3 cut(s) 426, 682, 856
AflIII ACRYGT 1 cut(s) 71
AgsI TTSAA 2 cut(s) 151, 576
AjiI CACGTC 1 cut(s) 946
AleI CACNNNNGTG 1 cut(s) 202
AluBI AGCT 6 cut(s) 25, 217, 409, 641, 828, 922
AluI AGCT 6 cut(s) 25, 217, 409, 641, 828, 922
Alw21I GWGCWC 4 cut(s) 219, 411, 924, 945
Alw26I GTCTC 2 cut(s) 445, 530
AlwI GGATC 2 cut(s) 227, 321
AoxI GGCC 5 cut(s) 138, 168, 318, 672, 698
ApoI RAATTY 2 cut(s) 860, 867
Asp700I GAANNNNTTC 1 cut(s) 442
AspLEI GCGC 2 cut(s) 66, 510
AspS9I GGNCC 4 cut(s) 139, 319, 341, 673
AsuHPI GGTGA 3 cut(s) 177, 637, 697
AvaII GGWCC 1 cut(s) 341
AxyI CCTNAGG 1 cut(s) 362
BaeGI GKGCMC 2 cut(s) 211, 879
BalI TGGCCA 1 cut(s) 170
BanI GGYRCC 1 cut(s) 874
BanII GRGCYC 3 cut(s) 219, 411, 924
BbsI GAAGAC 1 cut(s) 790
Bbv12I GWGCWC 4 cut(s) 219, 411, 924, 945
BccI CCATC 3 cut(s) 160, 196, 640
BceAI ACGGC 2 cut(s) 559, 713
BclI TGATCA 2 cut(s) 687, 822
BcoDI GTCTC 2 cut(s) 445, 530
BfaI CTAG 1 cut(s) 26
Bme18I GGWCC 1 cut(s) 341
BmgBI CACGTC 1 cut(s) 946
BmgT120I GGNCC 4 cut(s) 139, 319, 341, 673
BmiI GGNNCC 2 cut(s) 292, 876
BmrI ACTGGG 1 cut(s) 614
BmsI GCATC 2 cut(s) 432, 495
BmuI ACTGGG 1 cut(s) 614
BoxI GACNNNNGTC 1 cut(s) 522
BpiI GAAGAC 1 cut(s) 790
BpuEI CTTGAG 1 cut(s) 908
BsaJI CCNNGG 3 cut(s) 88, 499, 531
BsaXI ACNNNNNCTCC 2 cut(s) 201, 231
Bsc4I CCNNNNNNNGG 3 cut(s) 426, 682, 856
Bse1I ACTGG 4 cut(s) 609, 675, 757, 788
Bse21I CCTNAGG 1 cut(s) 362
Bse3DI GCAATG 1 cut(s) 553
BseDI CCNNGG 3 cut(s) 88, 499, 531
BseGI GGATG 3 cut(s) 84, 520, 936
BseLI CCNNNNNNNGG 3 cut(s) 426, 682, 856
BseMI GCAATG 1 cut(s) 553
BseMII CTCAG 3 cut(s) 376, 440, 656
BseNI ACTGG 4 cut(s) 609, 675, 757, 788
BseRI GAGGAG 2 cut(s) 209, 388
BseSI GKGCMC 2 cut(s) 211, 879
Bsh1236I CGCG 3 cut(s) 17, 64, 501
BshFI GGCC 5 cut(s) 140, 170, 320, 674, 700
BshNI GGYRCC 1 cut(s) 874
BsiHKAI GWGCWC 4 cut(s) 219, 411, 924, 945
BslFI GGGAC 1 cut(s) 545
BslI CCNNNNNNNGG 3 cut(s) 426, 682, 856
BsmAI GTCTC 2 cut(s) 445, 530
BsmFI GGGAC 1 cut(s) 545
BsnI GGCC 5 cut(s) 140, 170, 320, 674, 700
Bsp1286I GDGCHC 6 cut(s) 211, 219, 411, 879, 924, 945
Bsp143I GATC 4 cut(s) 232, 326, 687, 822
BspACI CCGC 6 cut(s) 17, 97, 254, 499, 501, 704
BspANI GGCC 5 cut(s) 140, 170, 320, 674, 700
BspCNI CTCAG 3 cut(s) 375, 441, 655
BspFNI CGCG 3 cut(s) 17, 64, 501
BspLI GGNNCC 2 cut(s) 292, 876
BspPI GGATC 2 cut(s) 227, 321
BspT107I GGYRCC 1 cut(s) 874
BsrDI GCAATG 1 cut(s) 553
BsrI ACTGG 4 cut(s) 609, 675, 757, 788
BssECI CCNNGG 3 cut(s) 88, 499, 531
BssMI GATC 4 cut(s) 232, 326, 687, 822
BssT1I CCWWGG 2 cut(s) 88, 531
Bst4CI ACNGT 3 cut(s) 204, 472, 580
Bst6I CTCTTC 1 cut(s) 849
BstC8I GCNNGC 3 cut(s) 421, 499, 887
BstDEI CTNAG 3 cut(s) 362, 449, 642
BstDSI CCRYGG 1 cut(s) 499
BstF5I GGATG 3 cut(s) 84, 520, 936
BstFNI CGCG 3 cut(s) 17, 64, 501
BstHHI GCGC 2 cut(s) 66, 510
BstKTI GATC 4 cut(s) 235, 329, 690, 825
BstMAI GTCTC 2 cut(s) 445, 530
BstMBI GATC 4 cut(s) 232, 326, 687, 822
BstMWI GCNNNNNNNGC 4 cut(s) 176, 483, 507, 803
BstNSI RCATGY 2 cut(s) 75, 664
BstPAI GACNNNNGTC 1 cut(s) 522
BstSLI GKGCMC 2 cut(s) 211, 879
BstUI CGCG 3 cut(s) 17, 64, 501
BstV2I GAAGAC 1 cut(s) 790
BstX2I RGATCY 1 cut(s) 232
BstXI CCANNNNNNTGG 2 cut(s) 204, 717
BstYI RGATCY 1 cut(s) 232
Bsu36I CCTNAGG 1 cut(s) 362
BsuRI GGCC 5 cut(s) 140, 170, 320, 674, 700
BtgI CCRYGG 1 cut(s) 499
BtrI CACGTC 1 cut(s) 946
BtsCI GGATG 3 cut(s) 84, 520, 936
BtsIMutI CAGTG 6 cut(s) 200, 446, 468, 602, 668, 750
Cac8I GCNNGC 3 cut(s) 421, 499, 887
CfoI GCGC 2 cut(s) 66, 510
Cfr13I GGNCC 4 cut(s) 139, 319, 341, 673
Cfr42I CCGCGG 1 cut(s) 502
CseI GACGC 1 cut(s) 134
CviAII CATG 5 cut(s) 72, 316, 511, 661, 818
DdeI CTNAG 3 cut(s) 362, 449, 642
DpnI GATC 4 cut(s) 234, 328, 689, 824
DpnII GATC 4 cut(s) 232, 326, 687, 822
EaeI YGGCCR 1 cut(s) 168
Eam1104I CTCTTC 1 cut(s) 849
EarI CTCTTC 1 cut(s) 849
EciI GGCGGA 1 cut(s) 693
Ecl136II GAGCTC 3 cut(s) 217, 409, 922
Eco130I CCWWGG 2 cut(s) 88, 531
Eco24I GRGCYC 3 cut(s) 219, 411, 924
Eco47I GGWCC 1 cut(s) 341
Eco53kI GAGCTC 3 cut(s) 217, 409, 922
Eco81I CCTNAGG 1 cut(s) 362
EcoICRI GAGCTC 3 cut(s) 217, 409, 922
EcoT14I CCWWGG 2 cut(s) 88, 531
EcoT22I ATGCAT 1 cut(s) 553
EcoT38I GRGCYC 3 cut(s) 219, 411, 924
ErhI CCWWGG 2 cut(s) 88, 531
FaeI CATG 5 cut(s) 75, 319, 514, 664, 821
FaqI GGGAC 1 cut(s) 545
FatI CATG 5 cut(s) 71, 315, 510, 660, 817
FauI CCCGC 3 cut(s) 90, 494, 506
FauNDI CATATG 1 cut(s) 881
FbaI TGATCA 2 cut(s) 687, 822
FokI GGATG 3 cut(s) 71, 527, 943
FriOI GRGCYC 3 cut(s) 219, 411, 924
FspBI CTAG 1 cut(s) 26
GlaI GCGC 2 cut(s) 65, 509
HaeIII GGCC 5 cut(s) 140, 170, 320, 674, 700
HgaI GACGC 1 cut(s) 134
HhaI GCGC 2 cut(s) 66, 510
Hin1II CATG 5 cut(s) 75, 319, 514, 664, 821
Hin6I GCGC 2 cut(s) 64, 508
HinP1I GCGC 2 cut(s) 64, 508
HinfI GANTC 4 cut(s) 182, 281, 457, 537
HphI GGTGA 3 cut(s) 177, 637, 697
Hpy166II GTNNAC 3 cut(s) 103, 344, 602
Hpy188I TCNGA 5 cut(s) 313, 645, 692, 739, 839
Hpy188III TCNNGA 5 cut(s) 148, 364, 427, 562, 925
Hpy8I GTNNAC 3 cut(s) 103, 344, 602
Hpy99I CGWCG 1 cut(s) 950
HpyAV CCTTC 1 cut(s) 304
HpyCH4III ACNGT 3 cut(s) 204, 472, 580
HpyCH4IV ACGT 2 cut(s) 37, 945
HpyCH4V TGCA 5 cut(s) 423, 486, 551, 596, 664
HpyF10VI GCNNNNNNNGC 4 cut(s) 176, 483, 507, 803
HpyF3I CTNAG 3 cut(s) 362, 449, 642
HpySE526I ACGT 2 cut(s) 37, 945
Hsp92II CATG 5 cut(s) 75, 319, 514, 664, 821
HspAI GCGC 2 cut(s) 64, 508
Ksp22I TGATCA 2 cut(s) 687, 822
KspI CCGCGG 1 cut(s) 502
Kzo9I GATC 4 cut(s) 232, 326, 687, 822
LmnI GCTCC 6 cut(s) 176, 222, 296, 401, 919, 940
LweI GCATC 2 cut(s) 432, 495
MaeI CTAG 1 cut(s) 26
MaeII ACGT 2 cut(s) 37, 945
MaeIII GTNAC 2 cut(s) 58, 122
MalI GATC 4 cut(s) 234, 328, 689, 824
MboI GATC 4 cut(s) 232, 326, 687, 822
MboII GAAGA 4 cut(s) 365, 643, 795, 866
MfeI CAATTG 2 cut(s) 156, 272
MflI RGATCY 1 cut(s) 232
MhlI GDGCHC 6 cut(s) 211, 219, 411, 879, 924, 945
MlsI TGGCCA 1 cut(s) 170
MluCI AATT 7 cut(s) 143, 156, 192, 243, 272, 860, 867
MluNI TGGCCA 1 cut(s) 170
Mox20I TGGCCA 1 cut(s) 170
Mph1103I ATGCAT 1 cut(s) 553
MroXI GAANNNNTTC 1 cut(s) 442
MscI TGGCCA 1 cut(s) 170
MslI CAYNNNNRTG 2 cut(s) 202, 948
Msp20I TGGCCA 1 cut(s) 170
MspA1I CMGCKG 1 cut(s) 501
MunI CAATTG 2 cut(s) 156, 272
MvnI CGCG 3 cut(s) 17, 64, 501
MwoI GCNNNNNNNGC 4 cut(s) 176, 483, 507, 803
NdeI CATATG 1 cut(s) 881
NdeII GATC 4 cut(s) 232, 326, 687, 822
NlaIII CATG 5 cut(s) 75, 319, 514, 664, 821
NlaIV GGNNCC 2 cut(s) 292, 876
NmuCI GTSAC 1 cut(s) 122
NsiI ATGCAT 1 cut(s) 553
NspI RCATGY 2 cut(s) 75, 664
OliI CACNNNNGTG 1 cut(s) 202
PciI ACATGT 1 cut(s) 71
PdmI GAANNNNTTC 1 cut(s) 442
PfeI GAWTC 4 cut(s) 182, 281, 457, 537
PflMI CCANNNNNTGG 1 cut(s) 682
PscI ACATGT 1 cut(s) 71
PshAI GACNNNNGTC 1 cut(s) 522
Psp124BI GAGCTC 3 cut(s) 219, 411, 924
PspN4I GGNNCC 2 cut(s) 292, 876
PspPI GGNCC 4 cut(s) 139, 319, 341, 673
PsuI RGATCY 1 cut(s) 232
RseI CAYNNNNRTG 2 cut(s) 202, 948
SacI GAGCTC 3 cut(s) 219, 411, 924
SacII CCGCGG 1 cut(s) 502
Sau3AI GATC 4 cut(s) 232, 326, 687, 822
Sau96I GGNCC 4 cut(s) 139, 319, 341, 673
SduI GDGCHC 6 cut(s) 211, 219, 411, 879, 924, 945
SfaNI GCATC 2 cut(s) 432, 495
Sfr303I CCGCGG 1 cut(s) 502
SgrBI CCGCGG 1 cut(s) 502
SinI GGWCC 1 cut(s) 341
SmiMI CAYNNNNRTG 2 cut(s) 202, 948
SmlI CTYRAG 1 cut(s) 923
SmoI CTYRAG 1 cut(s) 923
Sse9I AATT 7 cut(s) 143, 156, 192, 243, 272, 860, 867
SsiI CCGC 6 cut(s) 17, 97, 254, 499, 501, 704
SspMI CTAG 1 cut(s) 26
SstI GAGCTC 3 cut(s) 219, 411, 924
StyI CCWWGG 2 cut(s) 88, 531
TaaI ACNGT 3 cut(s) 204, 472, 580
TaiI ACGT 2 cut(s) 40, 948
TaqI TCGA 2 cut(s) 436, 948
TaqII GACCGA 1 cut(s) 329
TasI AATT 7 cut(s) 143, 156, 192, 243, 272, 860, 867
TfiI GAWTC 4 cut(s) 182, 281, 457, 537
TscAI CASTG 6 cut(s) 207, 453, 475, 609, 675, 757
TseFI GTSAC 1 cut(s) 122
Tsp45I GTSAC 1 cut(s) 122
TspDTI ATGAA 2 cut(s) 73, 286
TspRI CASTG 6 cut(s) 207, 453, 475, 609, 675, 757
Van91I CCANNNNNTGG 1 cut(s) 682
VpaK11BI GGWCC 1 cut(s) 341
XapI RAATTY 2 cut(s) 860, 867
XceI RCATGY 2 cut(s) 75, 664
XmnI GAANNNNTTC 1 cut(s) 442
XspI CTAG 1 cut(s) 26
Zsp2I ATGCAT 1 cut(s) 553
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.