Rmu_sc0006422.1_g000031

Benzyl alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006422.1
OG0000190
Physical Location & Seq
Reverse (-)
124556 .. 125020
465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006422.1_g000031.1.cds

Sequence Viewer

Length: 465 bp
atggcgttgccagtctccttagtgtttcaggttaatcgaacccagccacaacttataactccggcgaggccaactccacatgaaacaaagatgctgtcagatatagatgaccagcaaggccttaggtttcagataccagtcatcatagcctacaagaacaatccttcaatgtcgaaccgaaaagaccccgttccagtgatcagggaagcaataagtagagcattggtgtattactaccctttggcaggtaggctccgggaagggcctgacagaaagcttatggtggattgcaacggagaaggtgtgttgttcgttgaggctaatgctgacgttactctggaggaaaccatagatgctatccgacccccttgccctgtgttagaggacttcctatgcaatgtcccgggctcggatggcattctcggttgccctttgttgttatttcaggcaagtcaacagatataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

154

Amino Acids

17.09

Weight (kDa)

4.95

Isoelectric Point (pI)

43.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000190)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03480 AT5G17540
fragaria_vesca FvH4_2g12510 FvH4_3g38880 FvH4_3g40890 FvH4_5g24240 FvH4_5g24250 FvH4_5g24270 FvH4_5g24273 FvH4_6g05391 FvH4_6g05392
malus_domestica MD00G1201900.v1.1 MD00G1202100.v1.1 MD02G1001400.v1.1 MD02G1013900.v1.1 MD02G1014800.v1.1 MD02G1015000.v1.1 MD02G1015200.v1.1 MD03G1080200.v1.1 MD06G1016200.v1.1 MD06G1016500.v1.1 MD06G1017700.v1.1 MD06G1018100.v1.1 MD06G1018200.v1.1 MD06G1018400.v1.1 MD06G1018700.v1.1 MD06G1018800.v1.1 MD06G1019000.v1.1 MD06G1019100.v1.1 MD06G1019300.v1.1 MD06G1019800.v1.1 MD06G1020400.v1.1 MD06G1020700.v1.1 MD06G1020800.v1.1 MD06G1020900.v1.1 MD12G1038300.v1.1 MD12G1039400.v1.1
prunus_persica Prupe.5G017800_v2.0.a1 Prupe.5G017900_v2.0.a1 Prupe.5G018000_v2.0.a1 Prupe.5G018100_v2.0.a1 Prupe.5G018200_v2.0.a1 Prupe.8G000100_v2.0.a1
pyrus_communis pycom02g01330 pycom02g01390 pycom03g06420 pycom06g01300 pycom06g01320 pycom06g01340 pycom06g01500 pycom06g01510 pycom06g01520 pycom12g03300 pycom12g03320
rosa_chinensis RchiOBHm_Chr5g0051841 RchiOBHm_Chr6g0272991 RchiOBHm_Chr7g0213951 RchiOBHm_Chr7g0214051 RchiOBHm_Chr7g0214131 RchiOBHm_Chr7g0214161 RchiOBHm_Chr7g0214231 RchiOBHm_Chr7g0214321 RchiOBHm_Chr7g0214351 RchiOBHm_Chr7g0214391 RchiOBHm_Chr7g0214451 RchiOBHm_Chr7g0222591
rosa_laevigata RLG00000002044 RLG00000002744 RLG00000002751 RLG00000002752 RLG00000002755 RLG00000002756 RLG00000002757 RLG00000002758 RLG00000002762 RLG00000002763 RLG00000013652
rosa_multiflora Rmu_sc0000328.1_g000008 Rmu_sc0003764.1_g000001 Rmu_sc0003764.1_g000002 Rmu_sc0004199.1_g000004 Rmu_sc0004199.1_g000006 Rmu_sc0004199.1_g000014 Rmu_sc0004199.1_g000019 Rmu_sc0004199.1_g000022 Rmu_sc0005063.1_g000018 Rmu_sc0006422.1_g000030 Rmu_sc0006422.1_g000031 Rmu_sc0009579.1_g000011 Rmu_sc0009579.1_g000017 Rmu_sc0016182.1_g000005 Rmu_sc0016182.1_g000007 Rmu_sc0016279.1_g000002 Rmu_ssc0000387.1_g000031
rosa_roxburghii Rroxscaffold_1G00027390 Rroxscaffold_2G00146810 Rroxscaffold_3G00236600 Rroxscaffold_3G00236620 Rroxscaffold_3G00245350 Rroxscaffold_3G00245400 Rroxscaffold_3G00245440 Rroxscaffold_3G00245480 Rroxscaffold_3G00245560 Rroxscaffold_7G00195770
rosa_rugosa Rorug02G0047800 Rorug02G0047900 Rorug05G0276800 Rorug06G0071900 Rorug07G0145400 Rorug07G0145500 Rorug07G0145600 Rorug07G0145700 Rorug07G0145700 Rorug07G0145800 Rorug07G0211200
rosa_samantha Rh5BG359700 Rh6AG187600 Rh6DG181500 Rh7AG278000 Rh7AG278900 Rh7AG279800 Rh7AG279900 Rh7AG280100 Rh7AG280400 Rh7AG280700 Rh7AG281200 Rh7AG354300 Rh7AG354800 Rh7BG272300 Rh7BG272500 Rh7BG272600 Rh7BG272700 Rh7BG272800 Rh7BG273000 Rh7BG343200 Rh7CG297000 Rh7CG297900 Rh7CG298100 Rh7CG298800 Rh7CG299100 Rh7CG299300 Rh7CG299400 Rh7CG300000 Rh7CG300200 Rh7CG300600 Rh7CG371800 Rh7CG371900
rosa_wichuraiana Rw5G032880 Rw6G016270 Rw7G023930 Rw7G023980 Rw7G023990 Rw7G024000 Rw7G024010 Rw7G024020 Rw7G024030 Rw7G029800 Rw7G030090 Rw7G030140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 56
Acc36I ACCTGC 1 cut(s) 236
AfiI CCNNNNNNNGG 2 cut(s) 245, 409
AgsI TTSAA 1 cut(s) 168
AluBI AGCT 1 cut(s) 277
AluI AGCT 1 cut(s) 277
Alw26I GTCTC 1 cut(s) 19
Ama87I CYCGRG 1 cut(s) 403
AoxI GGCC 3 cut(s) 68, 118, 263
ArsI GACNNNNNNTTYG 2 cut(s) 80, 112
AspS9I GGNCC 1 cut(s) 263
AsuC2I CCSGG 3 cut(s) 257, 404, 405
AvaI CYCGRG 1 cut(s) 403
AxyI CCTNAGG 1 cut(s) 122
BanII GRGCYC 1 cut(s) 410
BccI CCATC 1 cut(s) 407
BcgI CGANNNNNNTGC 2 cut(s) 351, 385
BclI TGATCA 1 cut(s) 198
BcnI CCSGG 3 cut(s) 257, 404, 405
BcoDI GTCTC 1 cut(s) 19
BfuAI ACCTGC 1 cut(s) 236
Bme1390I CCNGG 3 cut(s) 257, 404, 405
BmeT110I CYCGRG 1 cut(s) 403
BmgT120I GGNCC 1 cut(s) 263
BmiI GGNNCC 1 cut(s) 254
BmrFI CCNGG 3 cut(s) 257, 404, 405
BmsI GCATC 2 cut(s) 81, 343
BplI GAGNNNNNCTC 2 cut(s) 58, 90
BpmI CTGGAG 1 cut(s) 359
BpuMI CCSGG 3 cut(s) 257, 404, 405
BsaJI CCNNGG 1 cut(s) 403
BsaXI ACNNNNNCTCC 2 cut(s) 288, 318
Bsc4I CCNNNNNNNGG 2 cut(s) 245, 409
Bse1I ACTGG 3 cut(s) 11, 137, 194
Bse21I CCTNAGG 1 cut(s) 122
Bse3DI GCAATG 1 cut(s) 403
BseDI CCNNGG 1 cut(s) 403
BseGI GGATG 1 cut(s) 418
BseLI CCNNNNNNNGG 2 cut(s) 245, 409
BseMI GCAATG 1 cut(s) 403
BseNI ACTGG 3 cut(s) 11, 137, 194
BseYI CCCAGC 1 cut(s) 42
BshFI GGCC 3 cut(s) 70, 120, 265
BsiHKCI CYCGRG 1 cut(s) 403
BsiSI CCGG 3 cut(s) 62, 256, 404
BslFI GGGAC 1 cut(s) 386
BslI CCNNNNNNNGG 2 cut(s) 245, 409
BsmAI GTCTC 1 cut(s) 19
BsmFI GGGAC 1 cut(s) 386
BsmI GAATGC 1 cut(s) 417
BsnI GGCC 3 cut(s) 70, 120, 265
BsoBI CYCGRG 1 cut(s) 403
Bsp1286I GDGCHC 1 cut(s) 410
Bsp143I GATC 1 cut(s) 198
BspANI GGCC 3 cut(s) 70, 120, 265
BspLI GGNNCC 1 cut(s) 254
BspMI ACCTGC 1 cut(s) 236
BsrDI GCAATG 1 cut(s) 403
BsrI ACTGG 3 cut(s) 11, 137, 194
BssECI CCNNGG 1 cut(s) 403
BssMI GATC 1 cut(s) 198
BstDEI CTNAG 2 cut(s) 19, 122
BstENI CCTNNNNNAGG 1 cut(s) 243
BstF5I GGATG 1 cut(s) 418
BstKTI GATC 1 cut(s) 201
BstMAI GTCTC 1 cut(s) 19
BstMBI GATC 1 cut(s) 198
BstMWI GCNNNNNNNGC 1 cut(s) 414
BstSCI CCNGG 3 cut(s) 255, 402, 403
Bsu36I CCTNAGG 1 cut(s) 122
BsuRI GGCC 3 cut(s) 70, 120, 265
BtsCI GGATG 1 cut(s) 418
BtsIMutI CAGTG 1 cut(s) 201
BveI ACCTGC 1 cut(s) 236
Cfr13I GGNCC 1 cut(s) 263
Cfr9I CCCGGG 1 cut(s) 403
CviAII CATG 1 cut(s) 80
CviJI RGCY 9 cut(s) 46, 70, 120, 149, 253, 265, 277, 320, 408
CviKI_1 RGCY 9 cut(s) 46, 70, 120, 149, 253, 265, 277, 320, 408
DdeI CTNAG 2 cut(s) 19, 122
DpnI GATC 1 cut(s) 200
DpnII GATC 1 cut(s) 198
Eco147I AGGCCT 1 cut(s) 120
Eco24I GRGCYC 1 cut(s) 410
Eco81I CCTNAGG 1 cut(s) 122
Eco88I CYCGRG 1 cut(s) 403
EcoNI CCTNNNNNAGG 1 cut(s) 243
EcoO109I RGGNCCY 1 cut(s) 263
EcoT38I GRGCYC 1 cut(s) 410
FaeI CATG 1 cut(s) 83
FaiI YATR 8 cut(s) 56, 81, 104, 146, 281, 350, 394, 463
FaqI GGGAC 1 cut(s) 386
FatI CATG 1 cut(s) 79
FbaI TGATCA 1 cut(s) 198
FokI GGATG 1 cut(s) 425
FriOI GRGCYC 1 cut(s) 410
GsaI CCCAGC 1 cut(s) 46
GsuI CTGGAG 1 cut(s) 359
HaeIII GGCC 3 cut(s) 70, 120, 265
HapII CCGG 3 cut(s) 62, 256, 404
Hin1II CATG 1 cut(s) 83
HincII GTYRAC 1 cut(s) 455
HindII GTYRAC 1 cut(s) 455
HindIII AAGCTT 1 cut(s) 275
HpaII CCGG 3 cut(s) 62, 256, 404
Hpy166II GTNNAC 1 cut(s) 455
Hpy188I TCNGA 4 cut(s) 100, 132, 362, 412
Hpy188III TCNNGA 1 cut(s) 338
Hpy8I GTNNAC 1 cut(s) 455
HpyAV CCTTC 3 cut(s) 174, 254, 293
HpyCH4IV ACGT 1 cut(s) 330
HpyCH4V TGCA 2 cut(s) 291, 396
HpyF10VI GCNNNNNNNGC 1 cut(s) 414
HpyF3I CTNAG 2 cut(s) 19, 122
HpySE526I ACGT 1 cut(s) 330
Hsp92II CATG 1 cut(s) 83
Ksp22I TGATCA 1 cut(s) 198
Kzo9I GATC 1 cut(s) 198
LmnI GCTCC 1 cut(s) 258
LweI GCATC 2 cut(s) 81, 343
MaeII ACGT 1 cut(s) 330
MaeIII GTNAC 1 cut(s) 331
MalI GATC 1 cut(s) 200
MboI GATC 1 cut(s) 198
MhlI GDGCHC 1 cut(s) 410
MmeI TCCRAC 1 cut(s) 385
MnlI CCTC 4 cut(s) 60, 310, 334, 376
MseI TTAA 1 cut(s) 33
MspI CCGG 3 cut(s) 62, 256, 404
MspR9I CCNGG 3 cut(s) 257, 404, 405
Mva1269I GAATGC 1 cut(s) 417
MwoI GCNNNNNNNGC 1 cut(s) 414
NciI CCSGG 3 cut(s) 257, 404, 405
NdeII GATC 1 cut(s) 198
NlaIII CATG 1 cut(s) 83
NlaIV GGNNCC 1 cut(s) 254
PceI AGGCCT 1 cut(s) 120
PctI GAATGC 1 cut(s) 417
PfoI TCCNGGA 1 cut(s) 255
PsiI TTATAA 1 cut(s) 56
PspFI CCCAGC 1 cut(s) 42
PspN4I GGNNCC 1 cut(s) 254
PspPI GGNCC 1 cut(s) 263
SaqAI TTAA 1 cut(s) 33
Sau3AI GATC 1 cut(s) 198
Sau96I GGNCC 1 cut(s) 263
ScrFI CCNGG 3 cut(s) 257, 404, 405
SduI GDGCHC 1 cut(s) 410
SetI ASST 6 cut(s) 33, 128, 250, 279, 304, 333
SfaNI GCATC 2 cut(s) 81, 343
SmaI CCCGGG 1 cut(s) 405
SseBI AGGCCT 1 cut(s) 120
StuI AGGCCT 1 cut(s) 120
StyD4I CCNGG 3 cut(s) 255, 402, 403
TaiI ACGT 1 cut(s) 333
TaqI TCGA 2 cut(s) 37, 173
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TscAI CASTG 1 cut(s) 201
TspDTI ATGAA 1 cut(s) 96
TspGWI ACGGA 1 cut(s) 309
TspMI CCCGGG 1 cut(s) 403
TspRI CASTG 1 cut(s) 201
XagI CCTNNNNNAGG 1 cut(s) 243
XmaI CCCGGG 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.