pycom06g01340

Benzyl alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0000190
Physical Location & Seq
Reverse (-)
1356319 .. 1357771
1453 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g01340.2

Sequence Viewer

Length: 516 bp
ATGTGTTACAAAAACAACCCTTCACTTAATAAAAATCGTAATCCCGTTAAGGTGATTAGGGAAGCCTTAAGTAGAGCATTAGTGTATTACTACCCTTTAGCTGGAAGGCTTAGGGAAGGGCCTAACAGAAAGCTCATGGTTGATTGCAATGGTGAAGGTATCTTGTTCGTCGAGGCTTCTGCTGATGTCACACTTGAGCAACTAGGAGACAAAATTCTACCCCCTTGTCCACTCTTAGAGGAGTTCTTATTTAATTTTCCAAGCTCTGATGGAATTATTGGTTGTCCTTTGCTGCTGGTTCAGGTGACCTGTCTTACATGTGGAGGTTTCATACTTGCATTGCGCCTAAACCACACAATGTGTGATGCACCTGGATTGCTCTTGTTCCTGACCGCCATTGCGGAAATGGAAGAGGCGCACATGCACCATCTATTCTACCAGTGTGGGAGAGAGAGTTGTTGTTCGCTCGAGATCCACCAAGAATTACATGTGCTCATCATGAATATGAAGACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

172

Amino Acids

19.17

Weight (kDa)

5.84

Isoelectric Point (pI)

40.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000190)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03480 AT5G17540
fragaria_vesca FvH4_2g12510 FvH4_3g38880 FvH4_3g40890 FvH4_5g24240 FvH4_5g24250 FvH4_5g24270 FvH4_5g24273 FvH4_6g05391 FvH4_6g05392
malus_domestica MD00G1201900.v1.1 MD00G1202100.v1.1 MD02G1001400.v1.1 MD02G1013900.v1.1 MD02G1014800.v1.1 MD02G1015000.v1.1 MD02G1015200.v1.1 MD03G1080200.v1.1 MD06G1016200.v1.1 MD06G1016500.v1.1 MD06G1017700.v1.1 MD06G1018100.v1.1 MD06G1018200.v1.1 MD06G1018400.v1.1 MD06G1018700.v1.1 MD06G1018800.v1.1 MD06G1019000.v1.1 MD06G1019100.v1.1 MD06G1019300.v1.1 MD06G1019800.v1.1 MD06G1020400.v1.1 MD06G1020700.v1.1 MD06G1020800.v1.1 MD06G1020900.v1.1 MD12G1038300.v1.1 MD12G1039400.v1.1
prunus_persica Prupe.5G017800_v2.0.a1 Prupe.5G017900_v2.0.a1 Prupe.5G018000_v2.0.a1 Prupe.5G018100_v2.0.a1 Prupe.5G018200_v2.0.a1 Prupe.8G000100_v2.0.a1
pyrus_communis pycom02g01330 pycom02g01390 pycom03g06420 pycom06g01300 pycom06g01320 pycom06g01340 pycom06g01500 pycom06g01510 pycom06g01520 pycom12g03300 pycom12g03320
rosa_chinensis RchiOBHm_Chr5g0051841 RchiOBHm_Chr6g0272991 RchiOBHm_Chr7g0213951 RchiOBHm_Chr7g0214051 RchiOBHm_Chr7g0214131 RchiOBHm_Chr7g0214161 RchiOBHm_Chr7g0214231 RchiOBHm_Chr7g0214321 RchiOBHm_Chr7g0214351 RchiOBHm_Chr7g0214391 RchiOBHm_Chr7g0214451 RchiOBHm_Chr7g0222591
rosa_laevigata RLG00000002044 RLG00000002744 RLG00000002751 RLG00000002752 RLG00000002755 RLG00000002756 RLG00000002757 RLG00000002758 RLG00000002762 RLG00000002763 RLG00000013652
rosa_multiflora Rmu_sc0000328.1_g000008 Rmu_sc0003764.1_g000001 Rmu_sc0003764.1_g000002 Rmu_sc0004199.1_g000004 Rmu_sc0004199.1_g000006 Rmu_sc0004199.1_g000014 Rmu_sc0004199.1_g000019 Rmu_sc0004199.1_g000022 Rmu_sc0005063.1_g000018 Rmu_sc0006422.1_g000030 Rmu_sc0006422.1_g000031 Rmu_sc0009579.1_g000011 Rmu_sc0009579.1_g000017 Rmu_sc0016182.1_g000005 Rmu_sc0016182.1_g000007 Rmu_sc0016279.1_g000002 Rmu_ssc0000387.1_g000031
rosa_roxburghii Rroxscaffold_1G00027390 Rroxscaffold_2G00146810 Rroxscaffold_3G00236600 Rroxscaffold_3G00236620 Rroxscaffold_3G00245350 Rroxscaffold_3G00245400 Rroxscaffold_3G00245440 Rroxscaffold_3G00245480 Rroxscaffold_3G00245560 Rroxscaffold_7G00195770
rosa_rugosa Rorug02G0047800 Rorug02G0047900 Rorug05G0276800 Rorug06G0071900 Rorug07G0145400 Rorug07G0145500 Rorug07G0145600 Rorug07G0145700 Rorug07G0145700 Rorug07G0145800 Rorug07G0211200
rosa_samantha Rh5BG359700 Rh6AG187600 Rh6DG181500 Rh7AG278000 Rh7AG278900 Rh7AG279800 Rh7AG279900 Rh7AG280100 Rh7AG280400 Rh7AG280700 Rh7AG281200 Rh7AG354300 Rh7AG354800 Rh7BG272300 Rh7BG272500 Rh7BG272600 Rh7BG272700 Rh7BG272800 Rh7BG273000 Rh7BG343200 Rh7CG297000 Rh7CG297900 Rh7CG298100 Rh7CG298800 Rh7CG299100 Rh7CG299300 Rh7CG299400 Rh7CG300000 Rh7CG300200 Rh7CG300600 Rh7CG371800 Rh7CG371900
rosa_wichuraiana Rw5G032880 Rw6G016270 Rw7G023930 Rw7G023980 Rw7G023990 Rw7G024000 Rw7G024010 Rw7G024020 Rw7G024030 Rw7G029800 Rw7G030090 Rw7G030140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 393, 401
AclWI GGATC 1 cut(s) 466
AcsI RAATTY 1 cut(s) 213
AdeI CACNNNGTG 1 cut(s) 360
AfiI CCNNNNNNNGG 1 cut(s) 101
AflII CTTAAG 1 cut(s) 67
AflIII ACRYGT 2 cut(s) 317, 487
AjiI CACGTC 1 cut(s) 513
AjnI CCWGG 1 cut(s) 370
AluBI AGCT 3 cut(s) 101, 133, 264
AluI AGCT 3 cut(s) 101, 133, 264
Alw21I GWGCWC 1 cut(s) 495
Alw26I GTCTC 1 cut(s) 201
AlwI GGATC 1 cut(s) 466
Ama87I CYCGRG 1 cut(s) 467
AoxI GGCC 1 cut(s) 119
ApeKI GCWGC 1 cut(s) 292
ApoI RAATTY 1 cut(s) 213
AspLEI GCGC 2 cut(s) 345, 418
AspS9I GGNCC 1 cut(s) 119
AsuHPI GGTGA 3 cut(s) 64, 164, 316
AvaI CYCGRG 1 cut(s) 467
Bbv12I GWGCWC 1 cut(s) 495
BbvI GCAGC 1 cut(s) 279
BccI CCATC 2 cut(s) 263, 435
BcgI CGANNNNNNTGC 2 cut(s) 161, 195
BciT130I CCWGG 1 cut(s) 372
BcoDI GTCTC 1 cut(s) 201
BfaI CTAG 1 cut(s) 203
BfrI CTTAAG 1 cut(s) 67
BisI GCNGC 1 cut(s) 293
BlsI GCNGC 1 cut(s) 294
Bme1390I CCNGG 1 cut(s) 372
BmeT110I CYCGRG 1 cut(s) 467
BmgBI CACGTC 1 cut(s) 513
BmgT120I GGNCC 1 cut(s) 119
BmrFI CCNGG 1 cut(s) 372
BmsI GCATC 1 cut(s) 355
Bpu10I CCTNAGC 1 cut(s) 110
BpuEI CTTGAG 1 cut(s) 215
BsaXI ACNNNNNCTCC 2 cut(s) 439, 469
Bsc4I CCNNNNNNNGG 1 cut(s) 101
Bse1I ACTGG 1 cut(s) 439
Bse3DI GCAATG 3 cut(s) 154, 338, 396
BseBI CCWGG 1 cut(s) 372
BseLI CCNNNNNNNGG 1 cut(s) 101
BseMI GCAATG 3 cut(s) 154, 338, 396
BseNI ACTGG 1 cut(s) 439
BseRI GAGGAG 1 cut(s) 254
BseXI GCAGC 1 cut(s) 279
BshFI GGCC 1 cut(s) 121
BsiHKAI GWGCWC 1 cut(s) 495
BsiHKCI CYCGRG 1 cut(s) 467
BslI CCNNNNNNNGG 1 cut(s) 101
BsmAI GTCTC 1 cut(s) 201
BsnI GGCC 1 cut(s) 121
BsoBI CYCGRG 1 cut(s) 467
Bsp1286I GDGCHC 1 cut(s) 495
Bsp143I GATC 1 cut(s) 471
BspACI CCGC 2 cut(s) 393, 401
BspANI GGCC 1 cut(s) 121
BspHI TCATGA 1 cut(s) 498
BspPI GGATC 1 cut(s) 466
BspTI CTTAAG 1 cut(s) 67
BsrDI GCAATG 3 cut(s) 154, 338, 396
BsrI ACTGG 1 cut(s) 439
BssMI GATC 1 cut(s) 471
Bst2UI CCWGG 1 cut(s) 372
Bst6I CTCTTC 1 cut(s) 405
BstAFI CTTAAG 1 cut(s) 67
BstDEI CTNAG 2 cut(s) 110, 235
BstEII GGTNACC 1 cut(s) 304
BstHHI GCGC 2 cut(s) 345, 418
BstKTI GATC 1 cut(s) 474
BstMAI GTCTC 1 cut(s) 201
BstMBI GATC 1 cut(s) 471
BstNI CCWGG 1 cut(s) 372
BstNSI RCATGY 3 cut(s) 321, 424, 491
BstPI GGTNACC 1 cut(s) 304
BstSCI CCNGG 1 cut(s) 370
BstV1I GCAGC 1 cut(s) 279
BstX2I RGATCY 1 cut(s) 471
BstYI RGATCY 1 cut(s) 471
BsuRI GGCC 1 cut(s) 121
BtrI CACGTC 1 cut(s) 513
BtsIMutI CAGTG 1 cut(s) 446
CciI TCATGA 1 cut(s) 498
CfoI GCGC 2 cut(s) 345, 418
Cfr13I GGNCC 1 cut(s) 119
CviAII CATG 5 cut(s) 136, 318, 421, 488, 499
CviJI RGCY 7 cut(s) 65, 101, 109, 121, 133, 176, 264
CviKI_1 RGCY 7 cut(s) 65, 101, 109, 121, 133, 176, 264
DdeI CTNAG 2 cut(s) 110, 235
DpnI GATC 1 cut(s) 473
DpnII GATC 1 cut(s) 471
DraIII CACNNNGTG 1 cut(s) 360
Eam1104I CTCTTC 1 cut(s) 405
EarI CTCTTC 1 cut(s) 405
Eco88I CYCGRG 1 cut(s) 467
Eco91I GGTNACC 1 cut(s) 304
EcoO109I RGGNCCY 1 cut(s) 119
EcoO65I GGTNACC 1 cut(s) 304
EcoRII CCWGG 1 cut(s) 370
FaeI CATG 5 cut(s) 139, 321, 424, 491, 502
FaiI YATR 7 cut(s) 137, 319, 332, 422, 489, 500, 506
FatI CATG 5 cut(s) 135, 317, 420, 487, 498
Fnu4HI GCNGC 1 cut(s) 293
Fsp4HI GCNGC 1 cut(s) 293
FspBI CTAG 1 cut(s) 203
GlaI GCGC 2 cut(s) 344, 417
GluI GCNGC 1 cut(s) 293
HaeIII GGCC 1 cut(s) 121
HhaI GCGC 2 cut(s) 345, 418
Hin1II CATG 5 cut(s) 139, 321, 424, 491, 502
Hin6I GCGC 2 cut(s) 343, 416
HinP1I GCGC 2 cut(s) 343, 416
HphI GGTGA 3 cut(s) 64, 164, 316
Hpy166II GTNNAC 1 cut(s) 230
Hpy188I TCNGA 1 cut(s) 268
Hpy188III TCNNGA 3 cut(s) 388, 469, 499
Hpy8I GTNNAC 1 cut(s) 230
Hpy99I CGWCG 1 cut(s) 173
HpyAV CCTTC 4 cut(s) 30, 99, 110, 149
HpyCH4IV ACGT 1 cut(s) 512
HpyCH4V TGCA 4 cut(s) 147, 338, 368, 424
HpyF3I CTNAG 2 cut(s) 110, 235
HpySE526I ACGT 1 cut(s) 512
Hsp92II CATG 5 cut(s) 139, 321, 424, 491, 502
HspAI GCGC 2 cut(s) 343, 416
Kzo9I GATC 1 cut(s) 471
LpnPI CCDG 8 cut(s) 87, 281, 287, 322, 357, 384, 401, 452
Lsp1109I GCAGC 1 cut(s) 279
LweI GCATC 1 cut(s) 355
MaeI CTAG 1 cut(s) 203
MaeII ACGT 1 cut(s) 512
MaeIII GTNAC 3 cut(s) 5, 187, 304
MalI GATC 1 cut(s) 473
MboI GATC 1 cut(s) 471
MboII GAAGA 1 cut(s) 422
MflI RGATCY 1 cut(s) 471
MhlI GDGCHC 1 cut(s) 495
MluCI AATT 4 cut(s) 213, 253, 273, 482
MnlI CCTC 4 cut(s) 166, 232, 317, 406
MseI TTAA 4 cut(s) 27, 48, 68, 252
MslI CAYNNNNRTG 1 cut(s) 503
MspCI CTTAAG 1 cut(s) 67
MspR9I CCNGG 1 cut(s) 372
MvaI CCWGG 1 cut(s) 372
NdeII GATC 1 cut(s) 471
NlaIII CATG 5 cut(s) 139, 321, 424, 491, 502
NmuCI GTSAC 2 cut(s) 187, 304
NspI RCATGY 3 cut(s) 321, 424, 491
PaeR7I CTCGAG 1 cut(s) 467
PagI TCATGA 1 cut(s) 498
PciI ACATGT 2 cut(s) 317, 487
PkrI GCNGC 1 cut(s) 294
PscI ACATGT 2 cut(s) 317, 487
Psp6I CCWGG 1 cut(s) 370
PspEI GGTNACC 1 cut(s) 304
PspGI CCWGG 1 cut(s) 370
PspPI GGNCC 1 cut(s) 119
PsuI RGATCY 1 cut(s) 471
RseI CAYNNNNRTG 1 cut(s) 503
SaqAI TTAA 4 cut(s) 27, 48, 68, 252
SatI GCNGC 1 cut(s) 293
Sau3AI GATC 1 cut(s) 471
Sau96I GGNCC 1 cut(s) 119
ScrFI CCNGG 1 cut(s) 372
SduI GDGCHC 1 cut(s) 495
SfaNI GCATC 1 cut(s) 355
Sfr274I CTCGAG 1 cut(s) 467
SlaI CTCGAG 1 cut(s) 467
SmiMI CAYNNNNRTG 1 cut(s) 503
SmlI CTYRAG 3 cut(s) 67, 194, 467
SmoI CTYRAG 3 cut(s) 67, 194, 467
Sse9I AATT 4 cut(s) 213, 253, 273, 482
SsiI CCGC 2 cut(s) 393, 401
SspMI CTAG 1 cut(s) 203
StyD4I CCNGG 1 cut(s) 370
TaiI ACGT 1 cut(s) 515
TaqI TCGA 2 cut(s) 171, 468
TasI AATT 4 cut(s) 213, 253, 273, 482
Tru1I TTAA 4 cut(s) 27, 48, 68, 252
Tru9I TTAA 4 cut(s) 27, 48, 68, 252
TscAI CASTG 1 cut(s) 446
TseFI GTSAC 2 cut(s) 187, 304
TseI GCWGC 1 cut(s) 292
Tsp45I GTSAC 2 cut(s) 187, 304
TspDTI ATGAA 2 cut(s) 319, 515
TspRI CASTG 1 cut(s) 446
Vha464I CTTAAG 1 cut(s) 67
XapI RAATTY 1 cut(s) 213
XceI RCATGY 3 cut(s) 321, 424, 491
XcmI CCANNNNNNNNNTGG 1 cut(s) 403
XhoI CTCGAG 1 cut(s) 467
XspI CTAG 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.