Rorug07G0145500

Benzyl alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000190
Physical Location & Seq
Forward (+)
11448414 .. 11450027
1614 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0145500.1

Sequence Viewer

Length: 624 bp
ATGGCAATGGCTCTGGTTAGAATGTTGCTGTTGGCAGCAATCGTCTGCTGCTTCTTGATGGGATCAGCCACTGCAAATTATCCAATGGCGCACATTGTTGGAGGAGGCTTCGGATGGAGCGTACCTGAGAACAACAAAACCTTCTATGCTGATTGGAGTGCCCCTAGAACCTTTGGGGTTGGCGATAGACTTGTTTTCCCATTCAGAACTGGCACCGGCAATGTGGTGATGGTGGACAAGAAGGACTACGAGGACTGCACTCAAAAAACTACGATCGCCTTTTACTACCTGGGACCAACAACTATCGTGCTCAGCAAACCAGGAGACTACTACTTCTATAGCGGTACTGGCAAGCACTGCGAGGCTGGCCAAAAGCTCCACGTCAAAGTTGAAGAAGGAAAGCAGGGATCTTCCGGATCTCAGTTTTCATTCAATATCAAACTCGGTGTTGACAGAAAGTCTTCTGTCGGTGCTGCTGCTCCGAAGGCCTTGTCCCCAGCACCTTCTAATGCGGATGCTGCTGCTGCTCCTGCTCCTGCTCCAAAGGCCTCAGCCTCCGCCACCATTCAAAATGTTGGCATCGCTTCTGGCCTTTTCACCATCCTATTTTCTTTGTTCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

207

Amino Acids

21.84

Weight (kDa)

9.02

Isoelectric Point (pI)

37.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 39 - 124 3.5e-20 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000190)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03480 AT5G17540
fragaria_vesca FvH4_2g12510 FvH4_3g38880 FvH4_3g40890 FvH4_5g24240 FvH4_5g24250 FvH4_5g24270 FvH4_5g24273 FvH4_6g05391 FvH4_6g05392
malus_domestica MD00G1201900.v1.1 MD00G1202100.v1.1 MD02G1001400.v1.1 MD02G1013900.v1.1 MD02G1014800.v1.1 MD02G1015000.v1.1 MD02G1015200.v1.1 MD03G1080200.v1.1 MD06G1016200.v1.1 MD06G1016500.v1.1 MD06G1017700.v1.1 MD06G1018100.v1.1 MD06G1018200.v1.1 MD06G1018400.v1.1 MD06G1018700.v1.1 MD06G1018800.v1.1 MD06G1019000.v1.1 MD06G1019100.v1.1 MD06G1019300.v1.1 MD06G1019800.v1.1 MD06G1020400.v1.1 MD06G1020700.v1.1 MD06G1020800.v1.1 MD06G1020900.v1.1 MD12G1038300.v1.1 MD12G1039400.v1.1
prunus_persica Prupe.5G017800_v2.0.a1 Prupe.5G017900_v2.0.a1 Prupe.5G018000_v2.0.a1 Prupe.5G018100_v2.0.a1 Prupe.5G018200_v2.0.a1 Prupe.8G000100_v2.0.a1
pyrus_communis pycom02g01330 pycom02g01390 pycom03g06420 pycom06g01300 pycom06g01320 pycom06g01340 pycom06g01500 pycom06g01510 pycom06g01520 pycom12g03300 pycom12g03320
rosa_chinensis RchiOBHm_Chr5g0051841 RchiOBHm_Chr6g0272991 RchiOBHm_Chr7g0213951 RchiOBHm_Chr7g0214051 RchiOBHm_Chr7g0214131 RchiOBHm_Chr7g0214161 RchiOBHm_Chr7g0214231 RchiOBHm_Chr7g0214321 RchiOBHm_Chr7g0214351 RchiOBHm_Chr7g0214391 RchiOBHm_Chr7g0214451 RchiOBHm_Chr7g0222591
rosa_laevigata RLG00000002044 RLG00000002744 RLG00000002751 RLG00000002752 RLG00000002755 RLG00000002756 RLG00000002757 RLG00000002758 RLG00000002762 RLG00000002763 RLG00000013652
rosa_multiflora Rmu_sc0000328.1_g000008 Rmu_sc0003764.1_g000001 Rmu_sc0003764.1_g000002 Rmu_sc0004199.1_g000004 Rmu_sc0004199.1_g000006 Rmu_sc0004199.1_g000014 Rmu_sc0004199.1_g000019 Rmu_sc0004199.1_g000022 Rmu_sc0005063.1_g000018 Rmu_sc0006422.1_g000030 Rmu_sc0006422.1_g000031 Rmu_sc0009579.1_g000011 Rmu_sc0009579.1_g000017 Rmu_sc0016182.1_g000005 Rmu_sc0016182.1_g000007 Rmu_sc0016279.1_g000002 Rmu_ssc0000387.1_g000031
rosa_roxburghii Rroxscaffold_1G00027390 Rroxscaffold_2G00146810 Rroxscaffold_3G00236600 Rroxscaffold_3G00236620 Rroxscaffold_3G00245350 Rroxscaffold_3G00245400 Rroxscaffold_3G00245440 Rroxscaffold_3G00245480 Rroxscaffold_3G00245560 Rroxscaffold_7G00195770
rosa_rugosa Rorug02G0047800 Rorug02G0047900 Rorug05G0276800 Rorug06G0071900 Rorug07G0145400 Rorug07G0145500 Rorug07G0145600 Rorug07G0145700 Rorug07G0145700 Rorug07G0145800 Rorug07G0211200
rosa_samantha Rh5BG359700 Rh6AG187600 Rh6DG181500 Rh7AG278000 Rh7AG278900 Rh7AG279800 Rh7AG279900 Rh7AG280100 Rh7AG280400 Rh7AG280700 Rh7AG281200 Rh7AG354300 Rh7AG354800 Rh7BG272300 Rh7BG272500 Rh7BG272600 Rh7BG272700 Rh7BG272800 Rh7BG273000 Rh7BG343200 Rh7CG297000 Rh7CG297900 Rh7CG298100 Rh7CG298800 Rh7CG299100 Rh7CG299300 Rh7CG299400 Rh7CG300000 Rh7CG300200 Rh7CG300600 Rh7CG371800 Rh7CG371900
rosa_wichuraiana Rw5G032880 Rw6G016270 Rw7G023930 Rw7G023980 Rw7G023990 Rw7G024000 Rw7G024010 Rw7G024020 Rw7G024030 Rw7G029800 Rw7G030090 Rw7G030140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 212
AccIII TCCGGA 1 cut(s) 413
AciI CCGC 3 cut(s) 342, 512, 558
AclWI GGATC 3 cut(s) 70, 415, 424
AcoI YGGCCR 1 cut(s) 367
AfaI GTAC 2 cut(s) 123, 346
AgsI TTSAA 3 cut(s) 392, 433, 569
AhdI GACNNNNNGTC 1 cut(s) 457
AjiI CACGTC 1 cut(s) 382
AjnI CCWGG 2 cut(s) 288, 319
AluBI AGCT 1 cut(s) 376
AluI AGCT 1 cut(s) 376
Alw21I GWGCWC 1 cut(s) 312
Alw26I GTCTC 1 cut(s) 318
AlwI GGATC 3 cut(s) 70, 415, 424
AlwNI CAGNNNCTG 1 cut(s) 71
Aor13HI TCCGGA 1 cut(s) 413
AoxI GGCC 4 cut(s) 367, 486, 546, 589
ApeKI GCWGC 7 cut(s) 35, 48, 473, 476, 518, 521, 524
ArsI GACNNNNNNTTYG 2 cut(s) 476, 508
Asp700I GAANNNNTTC 1 cut(s) 460
AspLEI GCGC 1 cut(s) 91
AspS9I GGNCC 1 cut(s) 293
AsuHPI GGTGA 2 cut(s) 238, 589
AvaII GGWCC 1 cut(s) 293
BaeGI GKGCMC 1 cut(s) 163
BalI TGGCCA 1 cut(s) 369
BanI GGYRCC 1 cut(s) 212
BbsI GAAGAC 1 cut(s) 453
Bbv12I GWGCWC 1 cut(s) 312
BbvCI CCTCAGC 1 cut(s) 550
BbvI GCAGC 7 cut(s) 35, 47, 460, 463, 505, 508, 511
BccI CCATC 4 cut(s) 52, 108, 223, 608
BciT130I CCWGG 2 cut(s) 290, 321
BcoDI GTCTC 1 cut(s) 318
BfaI CTAG 1 cut(s) 165
BfmI CTRYAG 1 cut(s) 337
BisI GCNGC 7 cut(s) 36, 49, 474, 477, 519, 522, 525
BlpI GCTNAGC 1 cut(s) 311
BlsI GCNGC 7 cut(s) 37, 50, 475, 478, 520, 523, 526
Bme1390I CCNGG 2 cut(s) 290, 321
Bme18I GGWCC 1 cut(s) 293
BmeRI GACNNNNNGTC 1 cut(s) 457
BmgBI CACGTC 1 cut(s) 382
BmgT120I GGNCC 1 cut(s) 293
BmiI GGNNCC 2 cut(s) 214, 294
BmrFI CCNGG 2 cut(s) 290, 321
BmsI GCATC 2 cut(s) 505, 588
BpiI GAAGAC 1 cut(s) 453
Bpu10I CCTNAGC 1 cut(s) 550
Bpu1102I GCTNAGC 1 cut(s) 311
BsaJI CCNNGG 1 cut(s) 289
BsaWI WCCGGW 1 cut(s) 413
Bse118I RCCGGY 1 cut(s) 215
Bse1I ACTGG 2 cut(s) 214, 352
Bse3DI GCAATG 2 cut(s) 12, 226
BseAI TCCGGA 1 cut(s) 413
BseBI CCWGG 2 cut(s) 290, 321
BseDI CCNNGG 1 cut(s) 289
BseGI GGATG 3 cut(s) 119, 520, 600
BseMI GCAATG 2 cut(s) 12, 226
BseMII CTCAG 4 cut(s) 117, 325, 434, 564
BseNI ACTGG 2 cut(s) 214, 352
BseRI GAGGAG 1 cut(s) 117
BseSI GKGCMC 1 cut(s) 163
BseXI GCAGC 7 cut(s) 35, 47, 460, 463, 505, 508, 511
BseYI CCCAGC 1 cut(s) 496
BsgI GTGCAG 1 cut(s) 241
Bsh1285I CGRYCG 1 cut(s) 276
BshFI GGCC 4 cut(s) 369, 488, 548, 591
BshNI GGYRCC 1 cut(s) 212
BsiEI CGRYCG 1 cut(s) 276
BsiHKAI GWGCWC 1 cut(s) 312
BsiSI CCGG 2 cut(s) 216, 414
BslFI GGGAC 2 cut(s) 306, 478
BsmAI GTCTC 1 cut(s) 318
BsmFI GGGAC 2 cut(s) 306, 478
BsnI GGCC 4 cut(s) 369, 488, 548, 591
Bsp1286I GDGCHC 2 cut(s) 163, 312
Bsp13I TCCGGA 1 cut(s) 413
Bsp143I GATC 4 cut(s) 62, 273, 407, 416
Bsp1720I GCTNAGC 1 cut(s) 311
BspACI CCGC 3 cut(s) 342, 512, 558
BspANI GGCC 4 cut(s) 369, 488, 548, 591
BspCNI CTCAG 4 cut(s) 118, 324, 433, 563
BspEI TCCGGA 1 cut(s) 413
BspLI GGNNCC 2 cut(s) 214, 294
BspPI GGATC 3 cut(s) 70, 415, 424
BspT107I GGYRCC 1 cut(s) 212
BsrDI GCAATG 2 cut(s) 12, 226
BsrFI RCCGGY 1 cut(s) 215
BsrI ACTGG 2 cut(s) 214, 352
BssAI RCCGGY 1 cut(s) 215
BssECI CCNNGG 1 cut(s) 289
BssMI GATC 4 cut(s) 62, 273, 407, 416
Bst2UI CCWGG 2 cut(s) 290, 321
BstAPI GCANNNNNTGC 1 cut(s) 357
BstC8I GCNNGC 2 cut(s) 353, 367
BstDEI CTNAG 4 cut(s) 126, 311, 420, 550
BstF5I GGATG 3 cut(s) 119, 520, 600
BstHHI GCGC 1 cut(s) 91
BstKTI GATC 4 cut(s) 65, 276, 410, 419
BstMAI GTCTC 1 cut(s) 318
BstMBI GATC 4 cut(s) 62, 273, 407, 416
BstMCI CGRYCG 1 cut(s) 276
BstMWI GCNNNNNNNGC 8 cut(s) 348, 357, 366, 485, 518, 524, 530, 545
BstNI CCWGG 2 cut(s) 290, 321
BstSCI CCNGG 2 cut(s) 288, 319
BstSFI CTRYAG 1 cut(s) 337
BstSLI GKGCMC 1 cut(s) 163
BstV1I GCAGC 7 cut(s) 35, 47, 460, 463, 505, 508, 511
BstV2I GAAGAC 1 cut(s) 453
BstX2I RGATCY 2 cut(s) 407, 416
BstYI RGATCY 2 cut(s) 407, 416
BsuRI GGCC 4 cut(s) 369, 488, 548, 591
BtgZI GCGATG 1 cut(s) 565
BtrI CACGTC 1 cut(s) 382
BtsCI GGATG 3 cut(s) 119, 520, 600
BtsI GCAGTG 2 cut(s) 69, 355
BtsIMutI CAGTG 2 cut(s) 69, 355
Cac8I GCNNGC 2 cut(s) 353, 367
CaiI CAGNNNCTG 1 cut(s) 71
CfoI GCGC 1 cut(s) 91
Cfr10I RCCGGY 1 cut(s) 215
Cfr13I GGNCC 1 cut(s) 293
Csp6I GTAC 2 cut(s) 122, 345
CviQI GTAC 2 cut(s) 122, 345
DdeI CTNAG 4 cut(s) 126, 311, 420, 550
DpnI GATC 4 cut(s) 64, 275, 409, 418
DpnII GATC 4 cut(s) 62, 273, 407, 416
DriI GACNNNNNGTC 1 cut(s) 457
EaeI YGGCCR 1 cut(s) 367
Eam1105I GACNNNNNGTC 1 cut(s) 457
EciI GGCGGA 1 cut(s) 547
Eco147I AGGCCT 2 cut(s) 488, 548
Eco47I GGWCC 1 cut(s) 293
EcoRII CCWGG 2 cut(s) 288, 319
FaiI YATR 4 cut(s) 147, 339, 620, 622
FaqI GGGAC 2 cut(s) 306, 478
Fnu4HI GCNGC 7 cut(s) 36, 49, 474, 477, 519, 522, 525
FokI GGATG 3 cut(s) 126, 527, 587
Fsp4HI GCNGC 7 cut(s) 36, 49, 474, 477, 519, 522, 525
FspBI CTAG 1 cut(s) 165
GlaI GCGC 1 cut(s) 90
GluI GCNGC 7 cut(s) 36, 49, 474, 477, 519, 522, 525
GsaI CCCAGC 1 cut(s) 500
HaeIII GGCC 4 cut(s) 369, 488, 548, 591
HapII CCGG 2 cut(s) 216, 414
HhaI GCGC 1 cut(s) 91
Hin6I GCGC 1 cut(s) 89
HinP1I GCGC 1 cut(s) 89
HincII GTYRAC 1 cut(s) 451
HindII GTYRAC 1 cut(s) 451
HpaII CCGG 2 cut(s) 216, 414
HphI GGTGA 2 cut(s) 238, 589
Hpy166II GTNNAC 2 cut(s) 235, 451
Hpy188I TCNGA 3 cut(s) 113, 206, 483
Hpy188III TCNNGA 2 cut(s) 55, 414
Hpy8I GTNNAC 2 cut(s) 235, 451
HpyAV CCTTC 5 cut(s) 151, 235, 389, 478, 513
HpyCH4IV ACGT 1 cut(s) 381
HpyCH4V TGCA 2 cut(s) 74, 258
HpyF10VI GCNNNNNNNGC 8 cut(s) 348, 357, 366, 485, 518, 524, 530, 545
HpyF3I CTNAG 4 cut(s) 126, 311, 420, 550
HpySE526I ACGT 1 cut(s) 381
HspAI GCGC 1 cut(s) 89
Kpn2I TCCGGA 1 cut(s) 413
Kzo9I GATC 4 cut(s) 62, 273, 407, 416
LmnI GCTCC 6 cut(s) 117, 381, 484, 532, 538, 544
Lsp1109I GCAGC 7 cut(s) 35, 47, 460, 463, 505, 508, 511
LweI GCATC 2 cut(s) 505, 588
MaeI CTAG 1 cut(s) 165
MaeII ACGT 1 cut(s) 381
MalI GATC 4 cut(s) 64, 275, 409, 418
MboI GATC 4 cut(s) 62, 273, 407, 416
MboII GAAGA 3 cut(s) 402, 404, 453
MflI RGATCY 2 cut(s) 407, 416
MhlI GDGCHC 2 cut(s) 163, 312
MlsI TGGCCA 1 cut(s) 369
MluCI AATT 1 cut(s) 76
MluNI TGGCCA 1 cut(s) 369
MmeI TCCRAC 1 cut(s) 79
MnlI CCTC 6 cut(s) 95, 98, 244, 355, 559, 565
Mox20I TGGCCA 1 cut(s) 369
MroI TCCGGA 1 cut(s) 413
MroXI GAANNNNTTC 1 cut(s) 460
MscI TGGCCA 1 cut(s) 369
Msp20I TGGCCA 1 cut(s) 369
MspI CCGG 2 cut(s) 216, 414
MspR9I CCNGG 2 cut(s) 290, 321
MvaI CCWGG 2 cut(s) 290, 321
MwoI GCNNNNNNNGC 8 cut(s) 348, 357, 366, 485, 518, 524, 530, 545
NdeII GATC 4 cut(s) 62, 273, 407, 416
NlaIV GGNNCC 2 cut(s) 214, 294
PceI AGGCCT 2 cut(s) 488, 548
PcsI WCGNNNNNNNCGW 1 cut(s) 117
PdmI GAANNNNTTC 1 cut(s) 460
PkrI GCNGC 7 cut(s) 37, 50, 475, 478, 520, 523, 526
Ple19I CGATCG 1 cut(s) 276
Psp6I CCWGG 2 cut(s) 288, 319
PspFI CCCAGC 1 cut(s) 496
PspGI CCWGG 2 cut(s) 288, 319
PspN4I GGNNCC 2 cut(s) 214, 294
PspPI GGNCC 1 cut(s) 293
PstNI CAGNNNCTG 1 cut(s) 71
PsuI RGATCY 2 cut(s) 407, 416
PvuI CGATCG 1 cut(s) 276
RsaI GTAC 2 cut(s) 123, 346
RsaNI GTAC 2 cut(s) 122, 345
SatI GCNGC 7 cut(s) 36, 49, 474, 477, 519, 522, 525
Sau3AI GATC 4 cut(s) 62, 273, 407, 416
Sau96I GGNCC 1 cut(s) 293
ScrFI CCNGG 2 cut(s) 290, 321
SduI GDGCHC 2 cut(s) 163, 312
SetI ASST 7 cut(s) 127, 143, 173, 291, 378, 384, 505
SfaNI GCATC 2 cut(s) 505, 588
SfcI CTRYAG 1 cut(s) 337
SinI GGWCC 1 cut(s) 293
Sse9I AATT 1 cut(s) 76
SseBI AGGCCT 2 cut(s) 488, 548
SsiI CCGC 3 cut(s) 342, 512, 558
SspMI CTAG 1 cut(s) 165
StuI AGGCCT 2 cut(s) 488, 548
StyD4I CCNGG 2 cut(s) 288, 319
TaiI ACGT 1 cut(s) 384
TasI AATT 1 cut(s) 76
TscAI CASTG 2 cut(s) 76, 362
TseI GCWGC 7 cut(s) 35, 48, 473, 476, 518, 521, 524
TspDTI ATGAA 2 cut(s) 417, 607
TspRI CASTG 2 cut(s) 76, 362
VpaK11BI GGWCC 1 cut(s) 293
XmnI GAANNNNTTC 1 cut(s) 460
XspI CTAG 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.