RLG00000002758

Benzyl alcohol

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
39255609 .. 39255935
327 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002758

Sequence Viewer

Length: 327 bp
ATGGTCATAAGAGGACGGCCTCCATTTACATTGACCGGGAACTTCATAGTTTCAGATGTTAGACGTACTGGCCTTGCAGATGTCAACTTGGGGTGGGGAAAGCCATCATTTTCTGGACCTGCCAAGGCCGTGAACATTGTTAGTTTCTATGTTCAGCACAAAAAGGAAAAAGAGGACGGGATTTTGGTGCCAGTGTGCTTGCCATTATGGTGTATGGCAAGATTTCAGCAGGAACTCGAGAAGATGACGTCGTCGGAGATAGTGGAAAATATAAATAACACTAAATCTGCTAATATTAATGTTGTAAGGATGATTCCACGGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

109

Amino Acids

12.12

Weight (kDa)

9.62

Isoelectric Point (pI)

58.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 12 - 82 2.2e-08 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000190)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03480 AT5G17540
fragaria_vesca FvH4_2g12510 FvH4_3g38880 FvH4_3g40890 FvH4_5g24240 FvH4_5g24250 FvH4_5g24270 FvH4_5g24273 FvH4_6g05391 FvH4_6g05392
malus_domestica MD00G1201900.v1.1 MD00G1202100.v1.1 MD02G1001400.v1.1 MD02G1013900.v1.1 MD02G1014800.v1.1 MD02G1015000.v1.1 MD02G1015200.v1.1 MD03G1080200.v1.1 MD06G1016200.v1.1 MD06G1016500.v1.1 MD06G1017700.v1.1 MD06G1018100.v1.1 MD06G1018200.v1.1 MD06G1018400.v1.1 MD06G1018700.v1.1 MD06G1018800.v1.1 MD06G1019000.v1.1 MD06G1019100.v1.1 MD06G1019300.v1.1 MD06G1019800.v1.1 MD06G1020400.v1.1 MD06G1020700.v1.1 MD06G1020800.v1.1 MD06G1020900.v1.1 MD12G1038300.v1.1 MD12G1039400.v1.1
prunus_persica Prupe.5G017800_v2.0.a1 Prupe.5G017900_v2.0.a1 Prupe.5G018000_v2.0.a1 Prupe.5G018100_v2.0.a1 Prupe.5G018200_v2.0.a1 Prupe.8G000100_v2.0.a1
pyrus_communis pycom02g01330 pycom02g01390 pycom03g06420 pycom06g01300 pycom06g01320 pycom06g01340 pycom06g01500 pycom06g01510 pycom06g01520 pycom12g03300 pycom12g03320
rosa_chinensis RchiOBHm_Chr5g0051841 RchiOBHm_Chr6g0272991 RchiOBHm_Chr7g0213951 RchiOBHm_Chr7g0214051 RchiOBHm_Chr7g0214131 RchiOBHm_Chr7g0214161 RchiOBHm_Chr7g0214231 RchiOBHm_Chr7g0214321 RchiOBHm_Chr7g0214351 RchiOBHm_Chr7g0214391 RchiOBHm_Chr7g0214451 RchiOBHm_Chr7g0222591
rosa_laevigata RLG00000002044 RLG00000002744 RLG00000002751 RLG00000002752 RLG00000002755 RLG00000002756 RLG00000002757 RLG00000002758 RLG00000002762 RLG00000002763 RLG00000013652
rosa_multiflora Rmu_sc0000328.1_g000008 Rmu_sc0003764.1_g000001 Rmu_sc0003764.1_g000002 Rmu_sc0004199.1_g000004 Rmu_sc0004199.1_g000006 Rmu_sc0004199.1_g000014 Rmu_sc0004199.1_g000019 Rmu_sc0004199.1_g000022 Rmu_sc0005063.1_g000018 Rmu_sc0006422.1_g000030 Rmu_sc0006422.1_g000031 Rmu_sc0009579.1_g000011 Rmu_sc0009579.1_g000017 Rmu_sc0016182.1_g000005 Rmu_sc0016182.1_g000007 Rmu_sc0016279.1_g000002 Rmu_ssc0000387.1_g000031
rosa_roxburghii Rroxscaffold_1G00027390 Rroxscaffold_2G00146810 Rroxscaffold_3G00236600 Rroxscaffold_3G00236620 Rroxscaffold_3G00245350 Rroxscaffold_3G00245400 Rroxscaffold_3G00245440 Rroxscaffold_3G00245480 Rroxscaffold_3G00245560 Rroxscaffold_7G00195770
rosa_rugosa Rorug02G0047800 Rorug02G0047900 Rorug05G0276800 Rorug06G0071900 Rorug07G0145400 Rorug07G0145500 Rorug07G0145600 Rorug07G0145700 Rorug07G0145700 Rorug07G0145800 Rorug07G0211200
rosa_samantha Rh5BG359700 Rh6AG187600 Rh6DG181500 Rh7AG278000 Rh7AG278900 Rh7AG279800 Rh7AG279900 Rh7AG280100 Rh7AG280400 Rh7AG280700 Rh7AG281200 Rh7AG354300 Rh7AG354800 Rh7BG272300 Rh7BG272500 Rh7BG272600 Rh7BG272700 Rh7BG272800 Rh7BG273000 Rh7BG343200 Rh7CG297000 Rh7CG297900 Rh7CG298100 Rh7CG298800 Rh7CG299100 Rh7CG299300 Rh7CG299400 Rh7CG300000 Rh7CG300200 Rh7CG300600 Rh7CG371800 Rh7CG371900
rosa_wichuraiana Rw5G032880 Rw6G016270 Rw7G023930 Rw7G023980 Rw7G023990 Rw7G024000 Rw7G024010 Rw7G024020 Rw7G024030 Rw7G029800 Rw7G030090 Rw7G030140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 251
Acc36I ACCTGC 1 cut(s) 127
AccB1I GGYRCC 1 cut(s) 187
AcyI GRCGYC 1 cut(s) 248
AfaI GTAC 1 cut(s) 67
Ama87I CYCGRG 1 cut(s) 236
AoxI GGCC 3 cut(s) 17, 70, 126
AseI ATTAAT 1 cut(s) 297
AspS9I GGNCC 1 cut(s) 116
AsuC2I CCSGG 1 cut(s) 37
AvaI CYCGRG 1 cut(s) 236
AvaII GGWCC 1 cut(s) 116
BanI GGYRCC 1 cut(s) 187
BccI CCATC 1 cut(s) 112
BceAI ACGGC 2 cut(s) 32, 113
BcnI CCSGG 1 cut(s) 37
BfuAI ACCTGC 1 cut(s) 127
Bme1390I CCNGG 1 cut(s) 37
Bme18I GGWCC 1 cut(s) 116
BmeT110I CYCGRG 1 cut(s) 236
BmgT120I GGNCC 1 cut(s) 116
BmiI GGNNCC 1 cut(s) 189
BmrFI CCNGG 1 cut(s) 37
BpuMI CCSGG 1 cut(s) 37
BsaHI GRCGYC 1 cut(s) 248
BsaJI CCNNGG 2 cut(s) 123, 317
Bse1I ACTGG 2 cut(s) 73, 191
BseDI CCNNGG 2 cut(s) 123, 317
BseGI GGATG 1 cut(s) 315
BseNI ACTGG 2 cut(s) 73, 191
BshFI GGCC 3 cut(s) 19, 72, 128
BshNI GGYRCC 1 cut(s) 187
BsiHKCI CYCGRG 1 cut(s) 236
BsiSI CCGG 1 cut(s) 36
BsnI GGCC 3 cut(s) 19, 72, 128
BsoBI CYCGRG 1 cut(s) 236
BspANI GGCC 3 cut(s) 19, 72, 128
BspLI GGNNCC 1 cut(s) 189
BspMI ACCTGC 1 cut(s) 127
BspT107I GGYRCC 1 cut(s) 187
BsrI ACTGG 2 cut(s) 73, 191
BssECI CCNNGG 2 cut(s) 123, 317
BssNI GRCGYC 1 cut(s) 248
BssT1I CCWWGG 1 cut(s) 123
Bst4CI ACNGT 1 cut(s) 321
BstACI GRCGYC 1 cut(s) 248
BstC8I GCNNGC 1 cut(s) 200
BstDSI CCRYGG 1 cut(s) 317
BstF5I GGATG 1 cut(s) 315
BstSCI CCNGG 1 cut(s) 35
BsuRI GGCC 3 cut(s) 19, 72, 128
BtgI CCRYGG 1 cut(s) 317
BtsCI GGATG 1 cut(s) 315
BtsIMutI CAGTG 1 cut(s) 198
BveI ACCTGC 1 cut(s) 127
Cac8I GCNNGC 1 cut(s) 200
Cfr13I GGNCC 1 cut(s) 116
Csp6I GTAC 1 cut(s) 66
CviJI RGCY 4 cut(s) 19, 72, 103, 128
CviKI_1 RGCY 4 cut(s) 19, 72, 103, 128
CviQI GTAC 1 cut(s) 66
Eco130I CCWWGG 1 cut(s) 123
Eco47I GGWCC 1 cut(s) 116
Eco88I CYCGRG 1 cut(s) 236
EcoT14I CCWWGG 1 cut(s) 123
ErhI CCWWGG 1 cut(s) 123
FaiI YATR 6 cut(s) 8, 47, 150, 208, 215, 272
FokI GGATG 1 cut(s) 322
HaeIII GGCC 3 cut(s) 19, 72, 128
HapII CCGG 1 cut(s) 36
Hin1I GRCGYC 1 cut(s) 248
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
HinfI GANTC 1 cut(s) 313
HpaII CCGG 1 cut(s) 36
Hpy166II GTNNAC 2 cut(s) 85, 133
Hpy188I TCNGA 2 cut(s) 55, 256
Hpy188III TCNNGA 2 cut(s) 114, 238
Hpy8I GTNNAC 2 cut(s) 85, 133
Hpy99I CGWCG 2 cut(s) 253, 256
HpyCH4III ACNGT 1 cut(s) 321
HpyCH4IV ACGT 2 cut(s) 64, 248
HpyCH4V TGCA 1 cut(s) 77
HpySE526I ACGT 2 cut(s) 64, 248
Hsp92I GRCGYC 1 cut(s) 248
LpnPI CCDG 6 cut(s) 49, 54, 99, 132, 204, 215
MaeII ACGT 2 cut(s) 64, 248
MboII GAAGA 1 cut(s) 253
MmeI TCCRAC 1 cut(s) 234
MnlI CCTC 3 cut(s) 5, 30, 166
MseI TTAA 1 cut(s) 297
MslI CAYNNNNRTG 1 cut(s) 208
MspI CCGG 1 cut(s) 36
MspR9I CCNGG 1 cut(s) 37
NciI CCSGG 1 cut(s) 37
NlaIV GGNNCC 1 cut(s) 189
PaeR7I CTCGAG 1 cut(s) 236
PfeI GAWTC 1 cut(s) 313
PflFI GACNNNGTC 1 cut(s) 250
PshBI ATTAAT 1 cut(s) 297
PspN4I GGNNCC 1 cut(s) 189
PspPI GGNCC 1 cut(s) 116
PsyI GACNNNGTC 1 cut(s) 250
RsaI GTAC 1 cut(s) 67
RsaNI GTAC 1 cut(s) 66
RseI CAYNNNNRTG 1 cut(s) 208
SaqAI TTAA 1 cut(s) 297
Sau96I GGNCC 1 cut(s) 116
ScrFI CCNGG 1 cut(s) 37
SetI ASST 3 cut(s) 67, 121, 251
Sfr274I CTCGAG 1 cut(s) 236
SinI GGWCC 1 cut(s) 116
SlaI CTCGAG 1 cut(s) 236
SmiMI CAYNNNNRTG 1 cut(s) 208
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
SspI AATATT 1 cut(s) 295
StyD4I CCNGG 1 cut(s) 35
StyI CCWWGG 1 cut(s) 123
TaaI ACNGT 1 cut(s) 321
TaiI ACGT 2 cut(s) 67, 251
TaqI TCGA 1 cut(s) 237
TfiI GAWTC 1 cut(s) 313
Tru1I TTAA 1 cut(s) 297
Tru9I TTAA 1 cut(s) 297
TscAI CASTG 1 cut(s) 198
TspDTI ATGAA 1 cut(s) 34
TspRI CASTG 1 cut(s) 198
Tth111I GACNNNGTC 1 cut(s) 250
VpaK11BI GGWCC 1 cut(s) 116
VspI ATTAAT 1 cut(s) 297
XhoI CTCGAG 1 cut(s) 236
ZraI GACGTC 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.