Rh7AG279800

Benzyl alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000190
Physical Location & Seq
Reverse (-)
29511640 .. 29512527
888 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG279800.1

Sequence Viewer

Length: 888 bp
ATGTGTGATGGGGCTGGATTGGTCCAGTTCTTGATCACAGTAGGGGAGATGGTTCAAGGAAAAACTGTACCATCTATTCCACCAGTGTGGGAGCGAGAGGTCTTGAATGCCCGAGATCCACCACGAATTTCATGTATACATCACGAATACGAGGAAATGATTGATGACTACTCAGATGAGCGCTCTGATGCGGCAGTAATGGTGCAAAAATCTTTCTACTTTGGTCCCAATGAGATAAGGGCCATGAAGAAACATCTTCCACCACACCTTTCCAATTGCTCTACATTCGACCTTATAACATCGTGTTTGTGGAAGTGCCGCACAGTTTCACTAGAACTTAATCCGGAACAGGTTGTTCGGGTTTCATGCATAGTCAATGCACGTGGGAAGCGCAACAGTCTAGGTCTTCCTTTGGGTTACTACGGCAATGCATTCGCATACCCAGCTGCTGTTTCAGGAGTGAAACAATTGTGTGAAAGTCCATTGGGATATGCACTGGAGTTGGTGATGAAGGCAAAATCTGAAATGAATGAAGAGTACATGAGATCAGTGGCAGATCTTATGGTCATAAGAGGACGGCCTCCATTTACATTGACCGGGAACTTCATAGTTTCAGATATTAGACGTACTGGCATCCCAGATGTCAACTTGGGGTGGGGAAAGCCATCATTTTCTGGACCTGCCAAGGCCGTGAACATTGTTAGTTTCTATGTTCAGCACAAAAAGGAAAAAGAGGACGGGATTTTGGTGCCAGTGTGCTTGCCATTGTGGAGTATGGCAAGATTTCAGCAGGAACTCGATAAGATGACGTCGTCGGAGATAGTGGAAAATATAAATAACACTAAATCTGCTAATATTAATGTTGTAAGGATGATTCCACGGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

295

Amino Acids

33.03

Weight (kDa)

7.55

Isoelectric Point (pI)

50.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 1 - 268 5.9e-32 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000190)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03480 AT5G17540
fragaria_vesca FvH4_2g12510 FvH4_3g38880 FvH4_3g40890 FvH4_5g24240 FvH4_5g24250 FvH4_5g24270 FvH4_5g24273 FvH4_6g05391 FvH4_6g05392
malus_domestica MD00G1201900.v1.1 MD00G1202100.v1.1 MD02G1001400.v1.1 MD02G1013900.v1.1 MD02G1014800.v1.1 MD02G1015000.v1.1 MD02G1015200.v1.1 MD03G1080200.v1.1 MD06G1016200.v1.1 MD06G1016500.v1.1 MD06G1017700.v1.1 MD06G1018100.v1.1 MD06G1018200.v1.1 MD06G1018400.v1.1 MD06G1018700.v1.1 MD06G1018800.v1.1 MD06G1019000.v1.1 MD06G1019100.v1.1 MD06G1019300.v1.1 MD06G1019800.v1.1 MD06G1020400.v1.1 MD06G1020700.v1.1 MD06G1020800.v1.1 MD06G1020900.v1.1 MD12G1038300.v1.1 MD12G1039400.v1.1
prunus_persica Prupe.5G017800_v2.0.a1 Prupe.5G017900_v2.0.a1 Prupe.5G018000_v2.0.a1 Prupe.5G018100_v2.0.a1 Prupe.5G018200_v2.0.a1 Prupe.8G000100_v2.0.a1
pyrus_communis pycom02g01330 pycom02g01390 pycom03g06420 pycom06g01300 pycom06g01320 pycom06g01340 pycom06g01500 pycom06g01510 pycom06g01520 pycom12g03300 pycom12g03320
rosa_chinensis RchiOBHm_Chr5g0051841 RchiOBHm_Chr6g0272991 RchiOBHm_Chr7g0213951 RchiOBHm_Chr7g0214051 RchiOBHm_Chr7g0214131 RchiOBHm_Chr7g0214161 RchiOBHm_Chr7g0214231 RchiOBHm_Chr7g0214321 RchiOBHm_Chr7g0214351 RchiOBHm_Chr7g0214391 RchiOBHm_Chr7g0214451 RchiOBHm_Chr7g0222591
rosa_laevigata RLG00000002044 RLG00000002744 RLG00000002751 RLG00000002752 RLG00000002755 RLG00000002756 RLG00000002757 RLG00000002758 RLG00000002762 RLG00000002763 RLG00000013652
rosa_multiflora Rmu_sc0000328.1_g000008 Rmu_sc0003764.1_g000001 Rmu_sc0003764.1_g000002 Rmu_sc0004199.1_g000004 Rmu_sc0004199.1_g000006 Rmu_sc0004199.1_g000014 Rmu_sc0004199.1_g000019 Rmu_sc0004199.1_g000022 Rmu_sc0005063.1_g000018 Rmu_sc0006422.1_g000030 Rmu_sc0006422.1_g000031 Rmu_sc0009579.1_g000011 Rmu_sc0009579.1_g000017 Rmu_sc0016182.1_g000005 Rmu_sc0016182.1_g000007 Rmu_sc0016279.1_g000002 Rmu_ssc0000387.1_g000031
rosa_roxburghii Rroxscaffold_1G00027390 Rroxscaffold_2G00146810 Rroxscaffold_3G00236600 Rroxscaffold_3G00236620 Rroxscaffold_3G00245350 Rroxscaffold_3G00245400 Rroxscaffold_3G00245440 Rroxscaffold_3G00245480 Rroxscaffold_3G00245560 Rroxscaffold_7G00195770
rosa_rugosa Rorug02G0047800 Rorug02G0047900 Rorug05G0276800 Rorug06G0071900 Rorug07G0145400 Rorug07G0145500 Rorug07G0145600 Rorug07G0145700 Rorug07G0145700 Rorug07G0145800 Rorug07G0211200
rosa_samantha Rh5BG359700 Rh6AG187600 Rh6DG181500 Rh7AG278000 Rh7AG278900 Rh7AG279800 Rh7AG279900 Rh7AG280100 Rh7AG280400 Rh7AG280700 Rh7AG281200 Rh7AG354300 Rh7AG354800 Rh7BG272300 Rh7BG272500 Rh7BG272600 Rh7BG272700 Rh7BG272800 Rh7BG273000 Rh7BG343200 Rh7CG297000 Rh7CG297900 Rh7CG298100 Rh7CG298800 Rh7CG299100 Rh7CG299300 Rh7CG299400 Rh7CG300000 Rh7CG300200 Rh7CG300600 Rh7CG371800 Rh7CG371900
rosa_wichuraiana Rw5G032880 Rw6G016270 Rw7G023930 Rw7G023980 Rw7G023990 Rw7G024000 Rw7G024010 Rw7G024020 Rw7G024030 Rw7G029800 Rw7G030090 Rw7G030140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 296
AatII GACGTC 1 cut(s) 812
Acc36I ACCTGC 1 cut(s) 688
AccB1I GGYRCC 1 cut(s) 748
AccI GTMKAC 1 cut(s) 136
AccIII TCCGGA 1 cut(s) 343
AciI CCGC 2 cut(s) 191, 319
AclWI GGATC 1 cut(s) 110
AcsI RAATTY 1 cut(s) 126
AcvI CACGTG 1 cut(s) 383
AcyI GRCGYC 1 cut(s) 809
AfaI GTAC 3 cut(s) 69, 539, 628
AfeI AGCGCT 1 cut(s) 182
AgsI TTSAA 2 cut(s) 56, 106
AleI CACNNNNGTG 1 cut(s) 85
AluBI AGCT 1 cut(s) 446
AluI AGCT 1 cut(s) 446
AlwI GGATC 1 cut(s) 110
AlwNI CAGNNNCTG 1 cut(s) 449
Ama87I CYCGRG 1 cut(s) 111
Aor13HI TCCGGA 1 cut(s) 343
Aor51HI AGCGCT 1 cut(s) 182
AoxI GGCC 3 cut(s) 240, 578, 687
ApeKI GCWGC 1 cut(s) 446
ApoI RAATTY 1 cut(s) 126
AseI ATTAAT 1 cut(s) 858
AspLEI GCGC 2 cut(s) 183, 393
AspS9I GGNCC 4 cut(s) 22, 224, 240, 677
AsuC2I CCSGG 1 cut(s) 598
AsuHPI GGTGA 1 cut(s) 517
AvaI CYCGRG 1 cut(s) 111
AvaII GGWCC 3 cut(s) 22, 224, 677
BanI GGYRCC 1 cut(s) 748
BbrPI CACGTG 1 cut(s) 383
BbsI GAAGAC 1 cut(s) 398
BbvI GCAGC 1 cut(s) 433
BccI CCATC 4 cut(s) 2, 43, 79, 673
BceAI ACGGC 3 cut(s) 439, 593, 674
BcgI CGANNNNNNTGC 2 cut(s) 415, 449
BclI TGATCA 1 cut(s) 33
BcnI CCSGG 1 cut(s) 598
BfaI CTAG 2 cut(s) 332, 401
BfoI RGCGCY 1 cut(s) 184
BfuAI ACCTGC 1 cut(s) 688
BglII AGATCT 1 cut(s) 556
BisI GCNGC 3 cut(s) 192, 319, 447
BlsI GCNGC 3 cut(s) 193, 320, 448
Bme1390I CCNGG 1 cut(s) 598
Bme18I GGWCC 3 cut(s) 22, 224, 677
BmeT110I CYCGRG 1 cut(s) 111
BmgT120I GGNCC 4 cut(s) 22, 224, 240, 677
BmiI GGNNCC 2 cut(s) 226, 750
BmrFI CCNGG 1 cut(s) 598
BmsI GCATC 2 cut(s) 178, 642
BpiI GAAGAC 1 cut(s) 398
BpmI CTGGAG 1 cut(s) 518
BpuMI CCSGG 1 cut(s) 598
BsaAI YACGTR 1 cut(s) 383
BsaHI GRCGYC 1 cut(s) 809
BsaJI CCNNGG 2 cut(s) 684, 878
BsaWI WCCGGW 1 cut(s) 343
Bse1I ACTGG 5 cut(s) 25, 83, 501, 634, 752
Bse3DI GCAATG 1 cut(s) 433
BseAI TCCGGA 1 cut(s) 343
BseDI CCNNGG 2 cut(s) 684, 878
BseGI GGATG 2 cut(s) 633, 876
BseMI GCAATG 1 cut(s) 433
BseMII CTCAG 1 cut(s) 186
BseNI ACTGG 5 cut(s) 25, 83, 501, 634, 752
BseXI GCAGC 1 cut(s) 433
BseYI CCCAGC 1 cut(s) 442
BshFI GGCC 3 cut(s) 242, 580, 689
BshNI GGYRCC 1 cut(s) 748
BsiHKCI CYCGRG 1 cut(s) 111
BsiSI CCGG 2 cut(s) 344, 597
BslFI GGGAC 1 cut(s) 210
BsmFI GGGAC 1 cut(s) 210
BsmI GAATGC 2 cut(s) 112, 431
BsnI GGCC 3 cut(s) 242, 580, 689
BsoBI CYCGRG 1 cut(s) 111
Bsp13I TCCGGA 1 cut(s) 343
Bsp143I GATC 4 cut(s) 33, 115, 545, 556
BspACI CCGC 2 cut(s) 191, 319
BspANI GGCC 3 cut(s) 242, 580, 689
BspCNI CTCAG 1 cut(s) 185
BspEI TCCGGA 1 cut(s) 343
BspLI GGNNCC 2 cut(s) 226, 750
BspMI ACCTGC 1 cut(s) 688
BspPI GGATC 1 cut(s) 110
BspT107I GGYRCC 1 cut(s) 748
BsrDI GCAATG 1 cut(s) 433
BsrI ACTGG 5 cut(s) 25, 83, 501, 634, 752
BssECI CCNNGG 2 cut(s) 684, 878
BssMI GATC 4 cut(s) 33, 115, 545, 556
BssNAI GTATAC 1 cut(s) 137
BssNI GRCGYC 1 cut(s) 809
BssT1I CCWWGG 1 cut(s) 684
Bst1107I GTATAC 1 cut(s) 137
Bst4CI ACNGT 5 cut(s) 40, 67, 325, 398, 882
Bst6I CTCTTC 1 cut(s) 528
BstACI GRCGYC 1 cut(s) 809
BstBAI YACGTR 1 cut(s) 383
BstC8I GCNNGC 1 cut(s) 761
BstDEI CTNAG 1 cut(s) 172
BstDSI CCRYGG 1 cut(s) 878
BstF5I GGATG 2 cut(s) 633, 876
BstH2I RGCGCY 1 cut(s) 184
BstHHI GCGC 2 cut(s) 183, 393
BstKTI GATC 4 cut(s) 36, 118, 548, 559
BstMBI GATC 4 cut(s) 33, 115, 545, 556
BstMWI GCNNNNNNNGC 1 cut(s) 443
BstSCI CCNGG 1 cut(s) 596
BstV1I GCAGC 1 cut(s) 433
BstV2I GAAGAC 1 cut(s) 398
BstX2I RGATCY 2 cut(s) 115, 556
BstXI CCANNNNNNTGG 1 cut(s) 87
BstYI RGATCY 2 cut(s) 115, 556
BstZ17I GTATAC 1 cut(s) 137
BsuRI GGCC 3 cut(s) 242, 580, 689
BtgI CCRYGG 1 cut(s) 878
BtsCI GGATG 2 cut(s) 633, 876
BtsIMutI CAGTG 4 cut(s) 90, 494, 555, 759
BveI ACCTGC 1 cut(s) 688
Cac8I GCNNGC 1 cut(s) 761
CaiI CAGNNNCTG 1 cut(s) 449
CfoI GCGC 2 cut(s) 183, 393
Cfr13I GGNCC 4 cut(s) 22, 224, 240, 677
Csp6I GTAC 3 cut(s) 68, 538, 627
CspCI CAANNNNNGTGG 2 cut(s) 364, 399
CviAII CATG 4 cut(s) 132, 244, 366, 541
CviJI RGCY 6 cut(s) 14, 242, 446, 580, 664, 689
CviKI_1 RGCY 6 cut(s) 14, 242, 446, 580, 664, 689
CviQI GTAC 3 cut(s) 68, 538, 627
DdeI CTNAG 1 cut(s) 172
DpnI GATC 4 cut(s) 35, 117, 547, 558
DpnII GATC 4 cut(s) 33, 115, 545, 556
Eam1104I CTCTTC 1 cut(s) 528
EarI CTCTTC 1 cut(s) 528
Eco130I CCWWGG 1 cut(s) 684
Eco47I GGWCC 3 cut(s) 22, 224, 677
Eco47III AGCGCT 1 cut(s) 182
Eco72I CACGTG 1 cut(s) 383
Eco88I CYCGRG 1 cut(s) 111
EcoT14I CCWWGG 1 cut(s) 684
EcoT22I ATGCAT 2 cut(s) 371, 433
ErhI CCWWGG 1 cut(s) 684
FaeI CATG 4 cut(s) 135, 247, 369, 544
FaqI GGGAC 1 cut(s) 210
FatI CATG 4 cut(s) 131, 243, 365, 540
FbaI TGATCA 1 cut(s) 33
FblI GTMKAC 1 cut(s) 136
Fnu4HI GCNGC 3 cut(s) 192, 319, 447
FokI GGATG 2 cut(s) 620, 883
Fsp4HI GCNGC 3 cut(s) 192, 319, 447
FspBI CTAG 2 cut(s) 332, 401
GlaI GCGC 2 cut(s) 182, 392
GluI GCNGC 3 cut(s) 192, 319, 447
GsaI CCCAGC 1 cut(s) 446
GsuI CTGGAG 1 cut(s) 518
HaeII RGCGCY 1 cut(s) 184
HaeIII GGCC 3 cut(s) 242, 580, 689
HapII CCGG 2 cut(s) 344, 597
HhaI GCGC 2 cut(s) 183, 393
Hin1I GRCGYC 1 cut(s) 809
Hin1II CATG 4 cut(s) 135, 247, 369, 544
Hin6I GCGC 2 cut(s) 181, 391
HinP1I GCGC 2 cut(s) 181, 391
HincII GTYRAC 1 cut(s) 646
HindII GTYRAC 1 cut(s) 646
HinfI GANTC 1 cut(s) 874
HpaII CCGG 2 cut(s) 344, 597
HphI GGTGA 1 cut(s) 517
Hpy166II GTNNAC 3 cut(s) 137, 646, 694
Hpy188I TCNGA 5 cut(s) 175, 187, 523, 616, 817
Hpy188III TCNNGA 6 cut(s) 31, 103, 143, 344, 456, 675
Hpy8I GTNNAC 3 cut(s) 137, 646, 694
Hpy99I CGWCG 2 cut(s) 814, 817
HpyAV CCTTC 1 cut(s) 505
HpyCH4III ACNGT 5 cut(s) 40, 67, 325, 398, 882
HpyCH4IV ACGT 3 cut(s) 382, 625, 809
HpyCH4V TGCA 5 cut(s) 205, 369, 380, 431, 494
HpyF10VI GCNNNNNNNGC 1 cut(s) 443
HpyF3I CTNAG 1 cut(s) 172
HpySE526I ACGT 3 cut(s) 382, 625, 809
Hsp92I GRCGYC 1 cut(s) 809
Hsp92II CATG 4 cut(s) 135, 247, 369, 544
HspAI GCGC 2 cut(s) 181, 391
Kpn2I TCCGGA 1 cut(s) 343
Ksp22I TGATCA 1 cut(s) 33
Kzo9I GATC 4 cut(s) 33, 115, 545, 556
LmnI GCTCC 1 cut(s) 91
Lsp1109I GCAGC 1 cut(s) 433
LweI GCATC 2 cut(s) 178, 642
MaeI CTAG 2 cut(s) 332, 401
MaeII ACGT 3 cut(s) 382, 625, 809
MaeIII GTNAC 1 cut(s) 416
MalI GATC 4 cut(s) 35, 117, 547, 558
MboI GATC 4 cut(s) 33, 115, 545, 556
MboII GAAGA 4 cut(s) 248, 259, 398, 545
MfeI CAATTG 2 cut(s) 274, 467
MflI RGATCY 2 cut(s) 115, 556
MluCI AATT 3 cut(s) 126, 274, 467
MmeI TCCRAC 1 cut(s) 795
MnlI CCTC 5 cut(s) 91, 145, 566, 591, 727
Mph1103I ATGCAT 2 cut(s) 371, 433
MroI TCCGGA 1 cut(s) 343
MseI TTAA 2 cut(s) 339, 858
MslI CAYNNNNRTG 1 cut(s) 85
MspA1I CMGCKG 1 cut(s) 446
MspI CCGG 2 cut(s) 344, 597
MspR9I CCNGG 1 cut(s) 598
MunI CAATTG 2 cut(s) 274, 467
Mva1269I GAATGC 2 cut(s) 112, 431
MwoI GCNNNNNNNGC 1 cut(s) 443
NciI CCSGG 1 cut(s) 598
NdeII GATC 4 cut(s) 33, 115, 545, 556
NlaIII CATG 4 cut(s) 135, 247, 369, 544
NlaIV GGNNCC 2 cut(s) 226, 750
NsiI ATGCAT 2 cut(s) 371, 433
OliI CACNNNNGTG 1 cut(s) 85
PctI GAATGC 2 cut(s) 112, 431
PfeI GAWTC 1 cut(s) 874
PflFI GACNNNGTC 1 cut(s) 811
PkrI GCNGC 3 cut(s) 193, 320, 448
PmaCI CACGTG 1 cut(s) 383
PmlI CACGTG 1 cut(s) 383
Ppu21I YACGTR 1 cut(s) 383
PshBI ATTAAT 1 cut(s) 858
PsiI TTATAA 1 cut(s) 296
PspCI CACGTG 1 cut(s) 383
PspFI CCCAGC 1 cut(s) 442
PspN4I GGNNCC 2 cut(s) 226, 750
PspPI GGNCC 4 cut(s) 22, 224, 240, 677
PstNI CAGNNNCTG 1 cut(s) 449
PsuI RGATCY 2 cut(s) 115, 556
PsyI GACNNNGTC 1 cut(s) 811
PvuII CAGCTG 1 cut(s) 446
RsaI GTAC 3 cut(s) 69, 539, 628
RsaNI GTAC 3 cut(s) 68, 538, 627
RseI CAYNNNNRTG 1 cut(s) 85
SaqAI TTAA 2 cut(s) 339, 858
SatI GCNGC 3 cut(s) 192, 319, 447
Sau3AI GATC 4 cut(s) 33, 115, 545, 556
Sau96I GGNCC 4 cut(s) 22, 224, 240, 677
ScrFI CCNGG 1 cut(s) 598
SfaNI GCATC 2 cut(s) 178, 642
SinI GGWCC 3 cut(s) 22, 224, 677
SmiMI CAYNNNNRTG 1 cut(s) 85
Sse9I AATT 3 cut(s) 126, 274, 467
SsiI CCGC 2 cut(s) 191, 319
SspI AATATT 1 cut(s) 856
SspMI CTAG 2 cut(s) 332, 401
StyD4I CCNGG 1 cut(s) 596
StyI CCWWGG 1 cut(s) 684
TaaI ACNGT 5 cut(s) 40, 67, 325, 398, 882
TaiI ACGT 3 cut(s) 385, 628, 812
TaqI TCGA 2 cut(s) 288, 798
TasI AATT 3 cut(s) 126, 274, 467
TatI WGTACW 1 cut(s) 537
TauI GCSGC 2 cut(s) 194, 321
TfiI GAWTC 1 cut(s) 874
Tru1I TTAA 2 cut(s) 339, 858
Tru9I TTAA 2 cut(s) 339, 858
TscAI CASTG 4 cut(s) 90, 501, 555, 759
TseI GCWGC 1 cut(s) 446
TspDTI ATGAA 7 cut(s) 120, 260, 354, 524, 542, 546, 595
TspRI CASTG 4 cut(s) 90, 501, 555, 759
Tth111I GACNNNGTC 1 cut(s) 811
VpaK11BI GGWCC 3 cut(s) 22, 224, 677
VspI ATTAAT 1 cut(s) 858
XapI RAATTY 1 cut(s) 126
XmiI GTMKAC 1 cut(s) 136
XspI CTAG 2 cut(s) 332, 401
ZraI GACGTC 1 cut(s) 810
Zsp2I ATGCAT 2 cut(s) 371, 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.