MD06G1020900.v1.1

Benzyl alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0000190
Physical Location & Seq
Reverse (-)
2624586 .. 2627421
2836 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1020900.v1.1.491

Sequence Viewer

Length: 750 bp
ATGGTGAAGGTATCTTGTTCGTCGAGGCTTTTGCTAACGTCACACTTGAGCAAAGGAGACAAAATTTTACCCCCTTGTCCGCTCTTAGAGGAGTTCTTATTTAATTTCCCAAGCTCTGATGGAATTATTGGTTTTCAAGTGACCTGTCTTACATGTGGAGGTTTCATACTTGCATTGCGCCTAAACCACAAAATGTGTGATGCACCTGGATTGCTCCAGTTCCTGAACGCTATTGCAGAGATGGCAAGGGGTGCACATGCACCATCTATTCTACCAGTGTGGGAGAGAGAGCTCTTGTTCGCTCGCTATCCATCAAGAATTACATGTGCTCATCATGAATATGAAGATGTGATTGATCATTCTGATGGCTCATACGCATCCAGTAACCAGTCAAACATGCTTCAACGATCTTTCTACTTTGGTGCCAAGGAGATGAGAGCTGTTCGCGTTTCATGCGCTGTCAATGCACATGGAGAGCACCACAATGTACGTCTTCCCTTGGGATACTATGGCAATGCATTTGCATTTCCAGCTGTAGTTTCAAAGGTAGAACCTCTATGCAAAAATCCACTGGGATATGCTTTGCTTTGGAGTTTTGGAGATGTCAATTGTGGATGGGGACAGCCGGTATTTGCTGGACCAGCCAAGGCCTTGGATTTGATTTGCTTCTACATTCAACACAAAAACAACACTGAGGATGGAATATTGGTACCAATGTGCTTGCCATTCTCGGCCATGGAGAGATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

250

Amino Acids

27.57

Weight (kDa)

6.78

Isoelectric Point (pI)

49.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 42 - 128 7.5e-16 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000190)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03480 AT5G17540
fragaria_vesca FvH4_2g12510 FvH4_3g38880 FvH4_3g40890 FvH4_5g24240 FvH4_5g24250 FvH4_5g24270 FvH4_5g24273 FvH4_6g05391 FvH4_6g05392
malus_domestica MD00G1201900.v1.1 MD00G1202100.v1.1 MD02G1001400.v1.1 MD02G1013900.v1.1 MD02G1014800.v1.1 MD02G1015000.v1.1 MD02G1015200.v1.1 MD03G1080200.v1.1 MD06G1016200.v1.1 MD06G1016500.v1.1 MD06G1017700.v1.1 MD06G1018100.v1.1 MD06G1018200.v1.1 MD06G1018400.v1.1 MD06G1018700.v1.1 MD06G1018800.v1.1 MD06G1019000.v1.1 MD06G1019100.v1.1 MD06G1019300.v1.1 MD06G1019800.v1.1 MD06G1020400.v1.1 MD06G1020700.v1.1 MD06G1020800.v1.1 MD06G1020900.v1.1 MD12G1038300.v1.1 MD12G1039400.v1.1
prunus_persica Prupe.5G017800_v2.0.a1 Prupe.5G017900_v2.0.a1 Prupe.5G018000_v2.0.a1 Prupe.5G018100_v2.0.a1 Prupe.5G018200_v2.0.a1 Prupe.8G000100_v2.0.a1
pyrus_communis pycom02g01330 pycom02g01390 pycom03g06420 pycom06g01300 pycom06g01320 pycom06g01340 pycom06g01500 pycom06g01510 pycom06g01520 pycom12g03300 pycom12g03320
rosa_chinensis RchiOBHm_Chr5g0051841 RchiOBHm_Chr6g0272991 RchiOBHm_Chr7g0213951 RchiOBHm_Chr7g0214051 RchiOBHm_Chr7g0214131 RchiOBHm_Chr7g0214161 RchiOBHm_Chr7g0214231 RchiOBHm_Chr7g0214321 RchiOBHm_Chr7g0214351 RchiOBHm_Chr7g0214391 RchiOBHm_Chr7g0214451 RchiOBHm_Chr7g0222591
rosa_laevigata RLG00000002044 RLG00000002744 RLG00000002751 RLG00000002752 RLG00000002755 RLG00000002756 RLG00000002757 RLG00000002758 RLG00000002762 RLG00000002763 RLG00000013652
rosa_multiflora Rmu_sc0000328.1_g000008 Rmu_sc0003764.1_g000001 Rmu_sc0003764.1_g000002 Rmu_sc0004199.1_g000004 Rmu_sc0004199.1_g000006 Rmu_sc0004199.1_g000014 Rmu_sc0004199.1_g000019 Rmu_sc0004199.1_g000022 Rmu_sc0005063.1_g000018 Rmu_sc0006422.1_g000030 Rmu_sc0006422.1_g000031 Rmu_sc0009579.1_g000011 Rmu_sc0009579.1_g000017 Rmu_sc0016182.1_g000005 Rmu_sc0016182.1_g000007 Rmu_sc0016279.1_g000002 Rmu_ssc0000387.1_g000031
rosa_roxburghii Rroxscaffold_1G00027390 Rroxscaffold_2G00146810 Rroxscaffold_3G00236600 Rroxscaffold_3G00236620 Rroxscaffold_3G00245350 Rroxscaffold_3G00245400 Rroxscaffold_3G00245440 Rroxscaffold_3G00245480 Rroxscaffold_3G00245560 Rroxscaffold_7G00195770
rosa_rugosa Rorug02G0047800 Rorug02G0047900 Rorug05G0276800 Rorug06G0071900 Rorug07G0145400 Rorug07G0145500 Rorug07G0145600 Rorug07G0145700 Rorug07G0145700 Rorug07G0145800 Rorug07G0211200
rosa_samantha Rh5BG359700 Rh6AG187600 Rh6DG181500 Rh7AG278000 Rh7AG278900 Rh7AG279800 Rh7AG279900 Rh7AG280100 Rh7AG280400 Rh7AG280700 Rh7AG281200 Rh7AG354300 Rh7AG354800 Rh7BG272300 Rh7BG272500 Rh7BG272600 Rh7BG272700 Rh7BG272800 Rh7BG273000 Rh7BG343200 Rh7CG297000 Rh7CG297900 Rh7CG298100 Rh7CG298800 Rh7CG299100 Rh7CG299300 Rh7CG299400 Rh7CG300000 Rh7CG300200 Rh7CG300600 Rh7CG371800 Rh7CG371900
rosa_wichuraiana Rw5G032880 Rw6G016270 Rw7G023930 Rw7G023980 Rw7G023990 Rw7G024000 Rw7G024010 Rw7G024020 Rw7G024030 Rw7G029800 Rw7G030090 Rw7G030140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 709
AccB1I GGYRCC 2 cut(s) 422, 709
AccBSI CCGCTC 1 cut(s) 82
AccII CGCG 1 cut(s) 447
AciI CCGC 1 cut(s) 80
AcoI YGGCCR 1 cut(s) 732
AcsI RAATTY 1 cut(s) 63
AfaI GTAC 2 cut(s) 489, 711
AflIII ACRYGT 2 cut(s) 152, 323
AgsI TTSAA 4 cut(s) 137, 404, 543, 677
AjnI CCWGG 1 cut(s) 205
AluBI AGCT 4 cut(s) 114, 292, 440, 533
AluI AGCT 4 cut(s) 114, 292, 440, 533
Alw21I GWGCWC 4 cut(s) 256, 294, 331, 480
Alw26I GTCTC 1 cut(s) 51
Alw44I GTGCAC 1 cut(s) 252
AlwNI CAGNNNCTG 1 cut(s) 223
AoxI GGCC 2 cut(s) 648, 732
ApaLI GTGCAC 1 cut(s) 252
ApoI RAATTY 1 cut(s) 63
Asp718I GGTACC 1 cut(s) 709
AspLEI GCGC 2 cut(s) 180, 458
AspS9I GGNCC 1 cut(s) 638
AsuHPI GGTGA 1 cut(s) 16
AvaII GGWCC 1 cut(s) 638
BaeGI GKGCMC 1 cut(s) 256
BaeI ACNNNNGTAYC 2 cut(s) 701, 734
BanI GGYRCC 2 cut(s) 422, 709
BanII GRGCYC 1 cut(s) 294
BbsI GAAGAC 1 cut(s) 485
Bbv12I GWGCWC 4 cut(s) 256, 294, 331, 480
BccI CCATC 7 cut(s) 113, 235, 271, 319, 359, 609, 692
BcgI CGANNNNNNTGC 2 cut(s) 13, 47
BciT130I CCWGG 1 cut(s) 207
BciVI GTATCC 1 cut(s) 497
BclI TGATCA 1 cut(s) 355
BcoDI GTCTC 1 cut(s) 51
BfmI CTRYAG 1 cut(s) 534
BfuI GTATCC 1 cut(s) 497
Bme1390I CCNGG 1 cut(s) 207
Bme18I GGWCC 1 cut(s) 638
BmgT120I GGNCC 1 cut(s) 638
BmiI GGNNCC 2 cut(s) 424, 711
BmrFI CCNGG 1 cut(s) 207
BmrI ACTGGG 1 cut(s) 581
BmsI GCATC 2 cut(s) 190, 386
BmuI ACTGGG 1 cut(s) 581
BpiI GAAGAC 1 cut(s) 485
BpmI CTGGAG 1 cut(s) 200
BpuEI CTTGAG 1 cut(s) 67
BsaJI CCNNGG 5 cut(s) 426, 498, 645, 651, 735
Bse118I RCCGGY 1 cut(s) 625
Bse1I ACTGG 5 cut(s) 217, 275, 381, 388, 576
Bse3DI GCAATG 2 cut(s) 173, 520
BseBI CCWGG 1 cut(s) 207
BseDI CCNNGG 5 cut(s) 426, 498, 645, 651, 735
BseGI GGATG 3 cut(s) 377, 620, 703
BseMI GCAATG 2 cut(s) 173, 520
BseMII CTCAG 1 cut(s) 684
BseNI ACTGG 5 cut(s) 217, 275, 381, 388, 576
BseRI GAGGAG 1 cut(s) 104
BseSI GKGCMC 1 cut(s) 256
Bsh1236I CGCG 1 cut(s) 447
BshFI GGCC 2 cut(s) 650, 734
BshNI GGYRCC 2 cut(s) 422, 709
BsiHKAI GWGCWC 4 cut(s) 256, 294, 331, 480
BsiSI CCGG 1 cut(s) 626
BslFI GGGAC 1 cut(s) 633
BsmAI GTCTC 1 cut(s) 51
BsmFI GGGAC 1 cut(s) 633
BsnI GGCC 2 cut(s) 650, 734
Bsp1286I GDGCHC 4 cut(s) 256, 294, 331, 480
Bsp143I GATC 2 cut(s) 355, 407
Bsp19I CCATGG 1 cut(s) 735
BspACI CCGC 1 cut(s) 80
BspANI GGCC 2 cut(s) 650, 734
BspCNI CTCAG 1 cut(s) 685
BspFNI CGCG 1 cut(s) 447
BspHI TCATGA 1 cut(s) 334
BspLI GGNNCC 2 cut(s) 424, 711
BspT107I GGYRCC 2 cut(s) 422, 709
BsrBI CCGCTC 1 cut(s) 82
BsrDI GCAATG 2 cut(s) 173, 520
BsrFI RCCGGY 1 cut(s) 625
BsrI ACTGG 5 cut(s) 217, 275, 381, 388, 576
BssAI RCCGGY 1 cut(s) 625
BssECI CCNNGG 5 cut(s) 426, 498, 645, 651, 735
BssMI GATC 2 cut(s) 355, 407
BssT1I CCWWGG 5 cut(s) 426, 498, 645, 651, 735
Bst2UI CCWGG 1 cut(s) 207
BstAPI GCANNNNNTGC 1 cut(s) 251
BstC8I GCNNGC 2 cut(s) 304, 722
BstDEI CTNAG 2 cut(s) 85, 693
BstDSI CCRYGG 1 cut(s) 735
BstF5I GGATG 3 cut(s) 377, 620, 703
BstFNI CGCG 1 cut(s) 447
BstHHI GCGC 2 cut(s) 180, 458
BstKTI GATC 2 cut(s) 358, 410
BstMAI GTCTC 1 cut(s) 51
BstMBI GATC 2 cut(s) 355, 407
BstMWI GCNNNNNNNGC 6 cut(s) 242, 251, 453, 464, 530, 641
BstNI CCWGG 1 cut(s) 207
BstNSI RCATGY 4 cut(s) 156, 260, 327, 400
BstSCI CCNGG 1 cut(s) 205
BstSFI CTRYAG 1 cut(s) 534
BstSLI GKGCMC 1 cut(s) 256
BstUI CGCG 1 cut(s) 447
BstV2I GAAGAC 1 cut(s) 485
BstXI CCANNNNNNTGG 1 cut(s) 652
BsuI GTATCC 1 cut(s) 497
BsuRI GGCC 2 cut(s) 650, 734
BtgI CCRYGG 1 cut(s) 735
BtsCI GGATG 3 cut(s) 377, 620, 703
BtsIMutI CAGTG 3 cut(s) 282, 569, 690
Cac8I GCNNGC 2 cut(s) 304, 722
CaiI CAGNNNCTG 1 cut(s) 223
CciI TCATGA 1 cut(s) 334
CfoI GCGC 2 cut(s) 180, 458
Cfr10I RCCGGY 1 cut(s) 625
Cfr13I GGNCC 1 cut(s) 638
Csp6I GTAC 2 cut(s) 488, 710
CviAII CATG 8 cut(s) 153, 257, 324, 335, 397, 453, 470, 736
CviQI GTAC 2 cut(s) 488, 710
DdeI CTNAG 2 cut(s) 85, 693
DpnI GATC 2 cut(s) 357, 409
DpnII GATC 2 cut(s) 355, 407
EaeI YGGCCR 1 cut(s) 732
Ecl136II GAGCTC 1 cut(s) 292
Eco130I CCWWGG 5 cut(s) 426, 498, 645, 651, 735
Eco147I AGGCCT 1 cut(s) 650
Eco24I GRGCYC 1 cut(s) 294
Eco47I GGWCC 1 cut(s) 638
Eco53kI GAGCTC 1 cut(s) 292
EcoICRI GAGCTC 1 cut(s) 292
EcoRII CCWGG 1 cut(s) 205
EcoT14I CCWWGG 5 cut(s) 426, 498, 645, 651, 735
EcoT22I ATGCAT 1 cut(s) 520
EcoT38I GRGCYC 1 cut(s) 294
ErhI CCWWGG 5 cut(s) 426, 498, 645, 651, 735
FaeI CATG 8 cut(s) 156, 260, 327, 338, 400, 456, 473, 739
FaqI GGGAC 1 cut(s) 633
FatI CATG 8 cut(s) 152, 256, 323, 334, 396, 452, 469, 735
FbaI TGATCA 1 cut(s) 355
FokI GGATG 3 cut(s) 364, 627, 710
FriOI GRGCYC 1 cut(s) 294
GlaI GCGC 2 cut(s) 179, 457
GsuI CTGGAG 1 cut(s) 200
HaeIII GGCC 2 cut(s) 650, 734
HapII CCGG 1 cut(s) 626
HhaI GCGC 2 cut(s) 180, 458
Hin1II CATG 8 cut(s) 156, 260, 327, 338, 400, 456, 473, 739
Hin6I GCGC 2 cut(s) 178, 456
HinP1I GCGC 2 cut(s) 178, 456
HpaII CCGG 1 cut(s) 626
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 254
Hpy188I TCNGA 2 cut(s) 118, 364
Hpy188III TCNNGA 3 cut(s) 223, 315, 335
Hpy8I GTNNAC 1 cut(s) 254
Hpy99I CGWCG 1 cut(s) 25
HpyCH4IV ACGT 2 cut(s) 38, 490
HpyCH4V TGCA 9 cut(s) 173, 203, 236, 254, 260, 467, 518, 524, 561
HpyF10VI GCNNNNNNNGC 6 cut(s) 242, 251, 453, 464, 530, 641
HpyF3I CTNAG 2 cut(s) 85, 693
HpySE526I ACGT 2 cut(s) 38, 490
Hsp92II CATG 8 cut(s) 156, 260, 327, 338, 400, 456, 473, 739
HspAI GCGC 2 cut(s) 178, 456
KpnI GGTACC 1 cut(s) 713
Ksp22I TGATCA 1 cut(s) 355
Kzo9I GATC 2 cut(s) 355, 407
LmnI GCTCC 1 cut(s) 219
LweI GCATC 2 cut(s) 190, 386
MaeII ACGT 2 cut(s) 38, 490
MaeIII GTNAC 3 cut(s) 39, 139, 383
MalI GATC 2 cut(s) 357, 409
MbiI CCGCTC 1 cut(s) 82
MboI GATC 2 cut(s) 355, 407
MboII GAAGA 2 cut(s) 356, 485
MfeI CAATTG 1 cut(s) 607
MhlI GDGCHC 4 cut(s) 256, 294, 331, 480
MluCI AATT 5 cut(s) 63, 103, 123, 318, 607
MnlI CCTC 5 cut(s) 18, 82, 152, 564, 688
Mph1103I ATGCAT 1 cut(s) 520
MseI TTAA 1 cut(s) 102
MslI CAYNNNNRTG 3 cut(s) 339, 363, 483
MspA1I CMGCKG 1 cut(s) 533
MspI CCGG 1 cut(s) 626
MspR9I CCNGG 1 cut(s) 207
MunI CAATTG 1 cut(s) 607
MvaI CCWGG 1 cut(s) 207
MvnI CGCG 1 cut(s) 447
MwoI GCNNNNNNNGC 6 cut(s) 242, 251, 453, 464, 530, 641
NcoI CCATGG 1 cut(s) 735
NdeII GATC 2 cut(s) 355, 407
NlaIII CATG 8 cut(s) 156, 260, 327, 338, 400, 456, 473, 739
NlaIV GGNNCC 2 cut(s) 424, 711
NmeAIII GCCGAG 1 cut(s) 710
NmuCI GTSAC 2 cut(s) 39, 139
NsiI ATGCAT 1 cut(s) 520
NspI RCATGY 4 cut(s) 156, 260, 327, 400
PagI TCATGA 1 cut(s) 334
PceI AGGCCT 1 cut(s) 650
PciI ACATGT 2 cut(s) 152, 323
PscI ACATGT 2 cut(s) 152, 323
Psp124BI GAGCTC 1 cut(s) 294
Psp6I CCWGG 1 cut(s) 205
PspGI CCWGG 1 cut(s) 205
PspN4I GGNNCC 2 cut(s) 424, 711
PspPI GGNCC 1 cut(s) 638
PstNI CAGNNNCTG 1 cut(s) 223
PvuII CAGCTG 1 cut(s) 533
RsaI GTAC 2 cut(s) 489, 711
RsaNI GTAC 2 cut(s) 488, 710
RseI CAYNNNNRTG 3 cut(s) 339, 363, 483
SacI GAGCTC 1 cut(s) 294
SaqAI TTAA 1 cut(s) 102
Sau3AI GATC 2 cut(s) 355, 407
Sau96I GGNCC 1 cut(s) 638
ScrFI CCNGG 1 cut(s) 207
SduI GDGCHC 4 cut(s) 256, 294, 331, 480
SfaNI GCATC 2 cut(s) 190, 386
SfcI CTRYAG 1 cut(s) 534
SinI GGWCC 1 cut(s) 638
SmiMI CAYNNNNRTG 3 cut(s) 339, 363, 483
SmlI CTYRAG 1 cut(s) 46
SmoI CTYRAG 1 cut(s) 46
Sse9I AATT 5 cut(s) 63, 103, 123, 318, 607
SseBI AGGCCT 1 cut(s) 650
SsiI CCGC 1 cut(s) 80
SspI AATATT 1 cut(s) 705
SstI GAGCTC 1 cut(s) 294
StuI AGGCCT 1 cut(s) 650
StyD4I CCNGG 1 cut(s) 205
StyI CCWWGG 5 cut(s) 426, 498, 645, 651, 735
TaiI ACGT 2 cut(s) 41, 493
TaqI TCGA 1 cut(s) 23
TasI AATT 5 cut(s) 63, 103, 123, 318, 607
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TscAI CASTG 3 cut(s) 282, 576, 697
TseFI GTSAC 2 cut(s) 39, 139
Tsp45I GTSAC 2 cut(s) 39, 139
TspDTI ATGAA 4 cut(s) 154, 351, 357, 441
TspRI CASTG 3 cut(s) 282, 576, 697
VneI GTGCAC 1 cut(s) 252
VpaK11BI GGWCC 1 cut(s) 638
XapI RAATTY 1 cut(s) 63
XceI RCATGY 4 cut(s) 156, 260, 327, 400
Zsp2I ATGCAT 1 cut(s) 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.