Rmu_sc0006422.1_g000030

Benzyl alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006422.1
OG0000190
Physical Location & Seq
Reverse (-)
121257 .. 122129
873 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006422.1_g000030.1.cds

Sequence Viewer

Length: 873 bp
atgtgtgatgcccctggattggtccagttcttgaacacagtaggggagatggctcaaggaaagaatgcaccatctattccaccagtgtgggagcgagaggtcttgaatgcccgagatccaccacgaattacatgtatacatcacgaattcgaggaaatgattgactactcagatcagggctctgatgacgcagtaatggtgcaaaaatcgttttactttggtcccaaggagataagggccttgaagaaacatcttccatcacaccttttcaattgctcgacattcgaccttataacatcttgtttgtggaaatgccgcacagttgcactagaacttaatccggaacaggttgttcgggtttcatgcctagtcaatgtacgtggaaagcgcaacaatctacgtcttcctctgggttactacggcaatgcattcgcatacccagctgctatttcgggagtgaaacaattgtgtgaaagtccgttgggatatgcactggagttggtgattaaggcaaaaggtgaaatgaatgaagagtacatgaaatcagtggcagatcttatggtcataagaggacggcctctatttactttgaccgggaacttcatagtttcagataatagacgtactggctttggagaagtcaacttggggtggggaaagccggcattttctggacctcccaaggccttgaaccttattagtttctttgtccagcacaagaaggaaaaagaggacgggattttggtgccagtgtgcttgccattgtggagtatgacgagatttcagcatgaactcgagaggatgacatcttcggagatagtggaaggtataaataacactaaacctgctagtagattaatgtcaatgttgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

290

Amino Acids

32.57

Weight (kDa)

8.07

Isoelectric Point (pI)

41.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000190)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03480 AT5G17540
fragaria_vesca FvH4_2g12510 FvH4_3g38880 FvH4_3g40890 FvH4_5g24240 FvH4_5g24250 FvH4_5g24270 FvH4_5g24273 FvH4_6g05391 FvH4_6g05392
malus_domestica MD00G1201900.v1.1 MD00G1202100.v1.1 MD02G1001400.v1.1 MD02G1013900.v1.1 MD02G1014800.v1.1 MD02G1015000.v1.1 MD02G1015200.v1.1 MD03G1080200.v1.1 MD06G1016200.v1.1 MD06G1016500.v1.1 MD06G1017700.v1.1 MD06G1018100.v1.1 MD06G1018200.v1.1 MD06G1018400.v1.1 MD06G1018700.v1.1 MD06G1018800.v1.1 MD06G1019000.v1.1 MD06G1019100.v1.1 MD06G1019300.v1.1 MD06G1019800.v1.1 MD06G1020400.v1.1 MD06G1020700.v1.1 MD06G1020800.v1.1 MD06G1020900.v1.1 MD12G1038300.v1.1 MD12G1039400.v1.1
prunus_persica Prupe.5G017800_v2.0.a1 Prupe.5G017900_v2.0.a1 Prupe.5G018000_v2.0.a1 Prupe.5G018100_v2.0.a1 Prupe.5G018200_v2.0.a1 Prupe.8G000100_v2.0.a1
pyrus_communis pycom02g01330 pycom02g01390 pycom03g06420 pycom06g01300 pycom06g01320 pycom06g01340 pycom06g01500 pycom06g01510 pycom06g01520 pycom12g03300 pycom12g03320
rosa_chinensis RchiOBHm_Chr5g0051841 RchiOBHm_Chr6g0272991 RchiOBHm_Chr7g0213951 RchiOBHm_Chr7g0214051 RchiOBHm_Chr7g0214131 RchiOBHm_Chr7g0214161 RchiOBHm_Chr7g0214231 RchiOBHm_Chr7g0214321 RchiOBHm_Chr7g0214351 RchiOBHm_Chr7g0214391 RchiOBHm_Chr7g0214451 RchiOBHm_Chr7g0222591
rosa_laevigata RLG00000002044 RLG00000002744 RLG00000002751 RLG00000002752 RLG00000002755 RLG00000002756 RLG00000002757 RLG00000002758 RLG00000002762 RLG00000002763 RLG00000013652
rosa_multiflora Rmu_sc0000328.1_g000008 Rmu_sc0003764.1_g000001 Rmu_sc0003764.1_g000002 Rmu_sc0004199.1_g000004 Rmu_sc0004199.1_g000006 Rmu_sc0004199.1_g000014 Rmu_sc0004199.1_g000019 Rmu_sc0004199.1_g000022 Rmu_sc0005063.1_g000018 Rmu_sc0006422.1_g000030 Rmu_sc0006422.1_g000031 Rmu_sc0009579.1_g000011 Rmu_sc0009579.1_g000017 Rmu_sc0016182.1_g000005 Rmu_sc0016182.1_g000007 Rmu_sc0016279.1_g000002 Rmu_ssc0000387.1_g000031
rosa_roxburghii Rroxscaffold_1G00027390 Rroxscaffold_2G00146810 Rroxscaffold_3G00236600 Rroxscaffold_3G00236620 Rroxscaffold_3G00245350 Rroxscaffold_3G00245400 Rroxscaffold_3G00245440 Rroxscaffold_3G00245480 Rroxscaffold_3G00245560 Rroxscaffold_7G00195770
rosa_rugosa Rorug02G0047800 Rorug02G0047900 Rorug05G0276800 Rorug06G0071900 Rorug07G0145400 Rorug07G0145500 Rorug07G0145600 Rorug07G0145700 Rorug07G0145700 Rorug07G0145800 Rorug07G0211200
rosa_samantha Rh5BG359700 Rh6AG187600 Rh6DG181500 Rh7AG278000 Rh7AG278900 Rh7AG279800 Rh7AG279900 Rh7AG280100 Rh7AG280400 Rh7AG280700 Rh7AG281200 Rh7AG354300 Rh7AG354800 Rh7BG272300 Rh7BG272500 Rh7BG272600 Rh7BG272700 Rh7BG272800 Rh7BG273000 Rh7BG343200 Rh7CG297000 Rh7CG297900 Rh7CG298100 Rh7CG298800 Rh7CG299100 Rh7CG299300 Rh7CG299400 Rh7CG300000 Rh7CG300200 Rh7CG300600 Rh7CG371800 Rh7CG371900
rosa_wichuraiana Rw5G032880 Rw6G016270 Rw7G023930 Rw7G023980 Rw7G023990 Rw7G024000 Rw7G024010 Rw7G024020 Rw7G024030 Rw7G029800 Rw7G030090 Rw7G030140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 293
Acc36I ACCTGC 1 cut(s) 853
AccB1I GGYRCC 1 cut(s) 745
AccI GTMKAC 1 cut(s) 136
AccIII TCCGGA 1 cut(s) 340
AciI CCGC 1 cut(s) 316
AclWI GGATC 1 cut(s) 110
AcsI RAATTY 1 cut(s) 146
AfaI GTAC 3 cut(s) 378, 536, 625
AfiI CCNNNNNNNGG 1 cut(s) 19
AflIII ACRYGT 1 cut(s) 131
AgsI TTSAA 5 cut(s) 34, 106, 244, 271, 691
AjnI CCWGG 1 cut(s) 13
AleI CACNNNNGTG 1 cut(s) 85
AluBI AGCT 1 cut(s) 443
AluI AGCT 1 cut(s) 443
AlwI GGATC 1 cut(s) 110
Ama87I CYCGRG 2 cut(s) 111, 794
Aor13HI TCCGGA 1 cut(s) 340
AoxI GGCC 3 cut(s) 237, 575, 684
ApeKI GCWGC 1 cut(s) 443
ApoI RAATTY 1 cut(s) 146
AseI ATTAAT 1 cut(s) 857
AspLEI GCGC 1 cut(s) 390
AspS9I GGNCC 4 cut(s) 22, 221, 237, 674
AsuC2I CCSGG 1 cut(s) 595
AsuHPI GGTGA 2 cut(s) 514, 530
AvaI CYCGRG 2 cut(s) 111, 794
AvaII GGWCC 3 cut(s) 22, 221, 674
BanI GGYRCC 1 cut(s) 745
BanII GRGCYC 1 cut(s) 182
BbsI GAAGAC 1 cut(s) 395
BbvI GCAGC 1 cut(s) 430
BccI CCATC 3 cut(s) 43, 79, 265
BceAI ACGGC 2 cut(s) 436, 590
BcgI CGANNNNNNTGC 2 cut(s) 412, 446
BciT130I CCWGG 1 cut(s) 15
BcnI CCSGG 1 cut(s) 595
BfaI CTAG 3 cut(s) 329, 368, 849
BfuAI ACCTGC 1 cut(s) 853
BglII AGATCT 1 cut(s) 553
BisI GCNGC 2 cut(s) 316, 444
BlsI GCNGC 2 cut(s) 317, 445
Bme1390I CCNGG 2 cut(s) 15, 595
Bme18I GGWCC 3 cut(s) 22, 221, 674
BmeT110I CYCGRG 2 cut(s) 111, 794
BmgT120I GGNCC 4 cut(s) 22, 221, 237, 674
BmiI GGNNCC 2 cut(s) 223, 747
BmrFI CCNGG 2 cut(s) 15, 595
BpiI GAAGAC 1 cut(s) 395
BpmI CTGGAG 1 cut(s) 515
BpuEI CTTGAG 1 cut(s) 39
BpuMI CCSGG 1 cut(s) 595
BsaAI YACGTR 1 cut(s) 380
BsaJI CCNNGG 3 cut(s) 13, 225, 681
BsaWI WCCGGW 1 cut(s) 340
Bsc4I CCNNNNNNNGG 1 cut(s) 19
Bse118I RCCGGY 1 cut(s) 661
Bse1I ACTGG 5 cut(s) 25, 83, 498, 631, 749
Bse3DI GCAATG 1 cut(s) 430
BseAI TCCGGA 1 cut(s) 340
BseBI CCWGG 1 cut(s) 15
BseDI CCNNGG 3 cut(s) 13, 225, 681
BseGI GGATG 1 cut(s) 807
BseLI CCNNNNNNNGG 1 cut(s) 19
BseMI GCAATG 1 cut(s) 430
BseMII CTCAG 1 cut(s) 183
BseNI ACTGG 5 cut(s) 25, 83, 498, 631, 749
BseXI GCAGC 1 cut(s) 430
BseYI CCCAGC 1 cut(s) 439
BshFI GGCC 3 cut(s) 239, 577, 686
BshNI GGYRCC 1 cut(s) 745
BsiHKCI CYCGRG 2 cut(s) 111, 794
BsiSI CCGG 3 cut(s) 341, 594, 662
BslFI GGGAC 1 cut(s) 207
BslI CCNNNNNNNGG 1 cut(s) 19
BsmFI GGGAC 1 cut(s) 207
BsmI GAATGC 3 cut(s) 70, 112, 428
BsnI GGCC 3 cut(s) 239, 577, 686
BsoBI CYCGRG 2 cut(s) 111, 794
Bsp1286I GDGCHC 1 cut(s) 182
Bsp13I TCCGGA 1 cut(s) 340
Bsp143I GATC 3 cut(s) 115, 172, 553
BspACI CCGC 1 cut(s) 316
BspANI GGCC 3 cut(s) 239, 577, 686
BspCNI CTCAG 1 cut(s) 182
BspEI TCCGGA 1 cut(s) 340
BspLI GGNNCC 2 cut(s) 223, 747
BspMI ACCTGC 1 cut(s) 853
BspPI GGATC 1 cut(s) 110
BspT107I GGYRCC 1 cut(s) 745
BsrDI GCAATG 1 cut(s) 430
BsrFI RCCGGY 1 cut(s) 661
BsrI ACTGG 5 cut(s) 25, 83, 498, 631, 749
BssAI RCCGGY 1 cut(s) 661
BssECI CCNNGG 3 cut(s) 13, 225, 681
BssMI GATC 3 cut(s) 115, 172, 553
BssNAI GTATAC 1 cut(s) 137
BssT1I CCWWGG 2 cut(s) 225, 681
Bst1107I GTATAC 1 cut(s) 137
Bst2UI CCWGG 1 cut(s) 15
Bst4CI ACNGT 2 cut(s) 40, 322
Bst6I CTCTTC 1 cut(s) 525
BstBAI YACGTR 1 cut(s) 380
BstC8I GCNNGC 2 cut(s) 663, 758
BstDEI CTNAG 1 cut(s) 169
BstF5I GGATG 1 cut(s) 807
BstHHI GCGC 1 cut(s) 390
BstKTI GATC 3 cut(s) 118, 175, 556
BstMBI GATC 3 cut(s) 115, 172, 553
BstMWI GCNNNNNNNGC 1 cut(s) 440
BstNI CCWGG 1 cut(s) 15
BstNSI RCATGY 1 cut(s) 135
BstSCI CCNGG 2 cut(s) 13, 593
BstV1I GCAGC 1 cut(s) 430
BstV2I GAAGAC 1 cut(s) 395
BstX2I RGATCY 2 cut(s) 115, 553
BstXI CCANNNNNNTGG 1 cut(s) 87
BstYI RGATCY 2 cut(s) 115, 553
BstZ17I GTATAC 1 cut(s) 137
BsuRI GGCC 3 cut(s) 239, 577, 686
BtsCI GGATG 1 cut(s) 807
BtsIMutI CAGTG 4 cut(s) 90, 491, 552, 756
BveI ACCTGC 1 cut(s) 853
Cac8I GCNNGC 2 cut(s) 663, 758
CfoI GCGC 1 cut(s) 390
Cfr10I RCCGGY 1 cut(s) 661
Cfr13I GGNCC 4 cut(s) 22, 221, 237, 674
CseI GACGC 1 cut(s) 197
Csp6I GTAC 3 cut(s) 377, 535, 624
CspCI CAANNNNNGTGG 2 cut(s) 361, 396
CviAII CATG 4 cut(s) 132, 363, 538, 788
CviJI RGCY 8 cut(s) 53, 180, 239, 443, 577, 630, 661, 686
CviKI_1 RGCY 8 cut(s) 53, 180, 239, 443, 577, 630, 661, 686
CviQI GTAC 3 cut(s) 377, 535, 624
DdeI CTNAG 1 cut(s) 169
DpnI GATC 3 cut(s) 117, 174, 555
DpnII GATC 3 cut(s) 115, 172, 553
Eam1104I CTCTTC 1 cut(s) 525
EarI CTCTTC 1 cut(s) 525
Eco130I CCWWGG 2 cut(s) 225, 681
Eco147I AGGCCT 1 cut(s) 686
Eco24I GRGCYC 1 cut(s) 182
Eco47I GGWCC 3 cut(s) 22, 221, 674
Eco88I CYCGRG 2 cut(s) 111, 794
EcoO109I RGGNCCY 1 cut(s) 237
EcoRI GAATTC 1 cut(s) 146
EcoRII CCWGG 1 cut(s) 13
EcoT14I CCWWGG 2 cut(s) 225, 681
EcoT22I ATGCAT 1 cut(s) 430
EcoT38I GRGCYC 1 cut(s) 182
ErhI CCWWGG 2 cut(s) 225, 681
FaeI CATG 4 cut(s) 135, 366, 541, 791
FaqI GGGAC 1 cut(s) 207
FatI CATG 4 cut(s) 131, 362, 537, 787
FblI GTMKAC 1 cut(s) 136
Fnu4HI GCNGC 2 cut(s) 316, 444
FokI GGATG 1 cut(s) 814
FriOI GRGCYC 1 cut(s) 182
Fsp4HI GCNGC 2 cut(s) 316, 444
FspBI CTAG 3 cut(s) 329, 368, 849
GlaI GCGC 1 cut(s) 389
GluI GCNGC 2 cut(s) 316, 444
GsaI CCCAGC 1 cut(s) 443
GsuI CTGGAG 1 cut(s) 515
HaeIII GGCC 3 cut(s) 239, 577, 686
HapII CCGG 3 cut(s) 341, 594, 662
HgaI GACGC 1 cut(s) 197
HhaI GCGC 1 cut(s) 390
Hin1II CATG 4 cut(s) 135, 366, 541, 791
Hin6I GCGC 1 cut(s) 388
HinP1I GCGC 1 cut(s) 388
HincII GTYRAC 1 cut(s) 643
HindII GTYRAC 1 cut(s) 643
HpaII CCGG 3 cut(s) 341, 594, 662
HphI GGTGA 2 cut(s) 514, 530
Hpy166II GTNNAC 2 cut(s) 137, 643
Hpy188I TCNGA 4 cut(s) 172, 184, 613, 814
Hpy188III TCNNGA 7 cut(s) 31, 103, 143, 341, 453, 672, 796
Hpy8I GTNNAC 2 cut(s) 137, 643
HpyAV CCTTC 2 cut(s) 715, 818
HpyCH4III ACNGT 2 cut(s) 40, 322
HpyCH4IV ACGT 3 cut(s) 379, 400, 622
HpyCH4V TGCA 5 cut(s) 68, 202, 326, 428, 491
HpyF10VI GCNNNNNNNGC 1 cut(s) 440
HpyF3I CTNAG 1 cut(s) 169
HpySE526I ACGT 3 cut(s) 379, 400, 622
Hsp92II CATG 4 cut(s) 135, 366, 541, 791
HspAI GCGC 1 cut(s) 388
Kpn2I TCCGGA 1 cut(s) 340
KroI GCCGGC 1 cut(s) 661
KroNI GCCGGC 1 cut(s) 663
Kzo9I GATC 3 cut(s) 115, 172, 553
LmnI GCTCC 1 cut(s) 91
Lsp1109I GCAGC 1 cut(s) 430
MaeI CTAG 3 cut(s) 329, 368, 849
MaeII ACGT 3 cut(s) 379, 400, 622
MaeIII GTNAC 1 cut(s) 413
MalI GATC 3 cut(s) 117, 174, 555
MboI GATC 3 cut(s) 115, 172, 553
MboII GAAGA 5 cut(s) 245, 256, 395, 542, 801
MfeI CAATTG 2 cut(s) 271, 464
MflI RGATCY 2 cut(s) 115, 553
MhlI GDGCHC 1 cut(s) 182
MluCI AATT 4 cut(s) 126, 146, 271, 464
MnlI CCTC 8 cut(s) 91, 145, 417, 563, 588, 687, 724, 792
Mph1103I ATGCAT 1 cut(s) 430
MroI TCCGGA 1 cut(s) 340
MroNI GCCGGC 1 cut(s) 661
MseI TTAA 3 cut(s) 336, 507, 857
MslI CAYNNNNRTG 1 cut(s) 85
MspA1I CMGCKG 1 cut(s) 443
MspI CCGG 3 cut(s) 341, 594, 662
MspR9I CCNGG 2 cut(s) 15, 595
MunI CAATTG 2 cut(s) 271, 464
Mva1269I GAATGC 3 cut(s) 70, 112, 428
MvaI CCWGG 1 cut(s) 15
MwoI GCNNNNNNNGC 1 cut(s) 440
NaeI GCCGGC 1 cut(s) 663
NciI CCSGG 1 cut(s) 595
NdeII GATC 3 cut(s) 115, 172, 553
NgoMIV GCCGGC 1 cut(s) 661
NlaIII CATG 4 cut(s) 135, 366, 541, 791
NlaIV GGNNCC 2 cut(s) 223, 747
NsiI ATGCAT 1 cut(s) 430
NspI RCATGY 1 cut(s) 135
OliI CACNNNNGTG 1 cut(s) 85
PaeR7I CTCGAG 1 cut(s) 794
PceI AGGCCT 1 cut(s) 686
PciI ACATGT 1 cut(s) 131
PctI GAATGC 3 cut(s) 70, 112, 428
PdiI GCCGGC 1 cut(s) 663
PkrI GCNGC 2 cut(s) 317, 445
Ppu21I YACGTR 1 cut(s) 380
PscI ACATGT 1 cut(s) 131
PshBI ATTAAT 1 cut(s) 857
PsiI TTATAA 1 cut(s) 293
Psp6I CCWGG 1 cut(s) 13
PspFI CCCAGC 1 cut(s) 439
PspGI CCWGG 1 cut(s) 13
PspN4I GGNNCC 2 cut(s) 223, 747
PspPI GGNCC 4 cut(s) 22, 221, 237, 674
PsuI RGATCY 2 cut(s) 115, 553
PvuII CAGCTG 1 cut(s) 443
RsaI GTAC 3 cut(s) 378, 536, 625
RsaNI GTAC 3 cut(s) 377, 535, 624
RseI CAYNNNNRTG 1 cut(s) 85
SaqAI TTAA 3 cut(s) 336, 507, 857
SatI GCNGC 2 cut(s) 316, 444
Sau3AI GATC 3 cut(s) 115, 172, 553
Sau96I GGNCC 4 cut(s) 22, 221, 237, 674
ScrFI CCNGG 2 cut(s) 15, 595
SduI GDGCHC 1 cut(s) 182
Sfr274I CTCGAG 1 cut(s) 794
SinI GGWCC 3 cut(s) 22, 221, 674
SlaI CTCGAG 1 cut(s) 794
SmiMI CAYNNNNRTG 1 cut(s) 85
SmlI CTYRAG 2 cut(s) 54, 794
SmoI CTYRAG 2 cut(s) 54, 794
Sse9I AATT 4 cut(s) 126, 146, 271, 464
SseBI AGGCCT 1 cut(s) 686
SsiI CCGC 1 cut(s) 316
SspMI CTAG 3 cut(s) 329, 368, 849
StuI AGGCCT 1 cut(s) 686
StyD4I CCNGG 2 cut(s) 13, 593
StyI CCWWGG 2 cut(s) 225, 681
TaaI ACNGT 2 cut(s) 40, 322
TaiI ACGT 3 cut(s) 382, 403, 625
TaqI TCGA 4 cut(s) 150, 278, 285, 795
TasI AATT 4 cut(s) 126, 146, 271, 464
TatI WGTACW 1 cut(s) 534
TauI GCSGC 1 cut(s) 318
Tru1I TTAA 3 cut(s) 336, 507, 857
Tru9I TTAA 3 cut(s) 336, 507, 857
TscAI CASTG 4 cut(s) 90, 498, 552, 756
TseI GCWGC 1 cut(s) 443
TspDTI ATGAA 6 cut(s) 351, 539, 543, 554, 592, 804
TspGWI ACGGA 1 cut(s) 468
TspRI CASTG 4 cut(s) 90, 498, 552, 756
VpaK11BI GGWCC 3 cut(s) 22, 221, 674
VspI ATTAAT 1 cut(s) 857
XapI RAATTY 1 cut(s) 146
XceI RCATGY 1 cut(s) 135
XhoI CTCGAG 1 cut(s) 794
XmiI GTMKAC 1 cut(s) 136
XspI CTAG 3 cut(s) 329, 368, 849
Zsp2I ATGCAT 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.