Rh7CG299400

Benzyl alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000190
Physical Location & Seq
Reverse (-)
30871501 .. 30871968
468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG299400.1

Sequence Viewer

Length: 468 bp
ATGGCGTTGCCACGCTCCATAGTATTTCAGGTTAATCGAACCCAACCACAACTTATAACTCCGGCAAGGCCAACTCCTCGTGAAACAAAGATGCTGTCAGATATAGATGATCAGCAAGGCCTTAGGTTTCAGGCACCAGTCATTGCAGCCTTCAAGAACAATCCTTCAATGTCGAACCGAAAAGACCCTGTTCAGGTGATCAGGGCAGCAATAAGTAGAGCATTGGTGTATTACTACCCTTTGGCAGGTAGGCTCAGGGAAGGGCCTAACAGAAAGCTTATGGTGGATTGCAACGGAGAAGGTGTCTTGTTCGTTGGGGCTAATGCTGACGTTACTCTCGAGGAAATTGGAGATGCTATTCTACCCCCTTGCCCTGTGTTAGAGGACTTCCTATGTAATGTCCCGGGCTCGGATGGCATTCTTGGTTGCCCTTTGTTGTTAGTTCAGGTAAGTCAACGGATACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

155

Amino Acids

17.01

Weight (kDa)

7.63

Isoelectric Point (pI)

41.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 10 - 151 2.4e-27 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000190)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03480 AT5G17540
fragaria_vesca FvH4_2g12510 FvH4_3g38880 FvH4_3g40890 FvH4_5g24240 FvH4_5g24250 FvH4_5g24270 FvH4_5g24273 FvH4_6g05391 FvH4_6g05392
malus_domestica MD00G1201900.v1.1 MD00G1202100.v1.1 MD02G1001400.v1.1 MD02G1013900.v1.1 MD02G1014800.v1.1 MD02G1015000.v1.1 MD02G1015200.v1.1 MD03G1080200.v1.1 MD06G1016200.v1.1 MD06G1016500.v1.1 MD06G1017700.v1.1 MD06G1018100.v1.1 MD06G1018200.v1.1 MD06G1018400.v1.1 MD06G1018700.v1.1 MD06G1018800.v1.1 MD06G1019000.v1.1 MD06G1019100.v1.1 MD06G1019300.v1.1 MD06G1019800.v1.1 MD06G1020400.v1.1 MD06G1020700.v1.1 MD06G1020800.v1.1 MD06G1020900.v1.1 MD12G1038300.v1.1 MD12G1039400.v1.1
prunus_persica Prupe.5G017800_v2.0.a1 Prupe.5G017900_v2.0.a1 Prupe.5G018000_v2.0.a1 Prupe.5G018100_v2.0.a1 Prupe.5G018200_v2.0.a1 Prupe.8G000100_v2.0.a1
pyrus_communis pycom02g01330 pycom02g01390 pycom03g06420 pycom06g01300 pycom06g01320 pycom06g01340 pycom06g01500 pycom06g01510 pycom06g01520 pycom12g03300 pycom12g03320
rosa_chinensis RchiOBHm_Chr5g0051841 RchiOBHm_Chr6g0272991 RchiOBHm_Chr7g0213951 RchiOBHm_Chr7g0214051 RchiOBHm_Chr7g0214131 RchiOBHm_Chr7g0214161 RchiOBHm_Chr7g0214231 RchiOBHm_Chr7g0214321 RchiOBHm_Chr7g0214351 RchiOBHm_Chr7g0214391 RchiOBHm_Chr7g0214451 RchiOBHm_Chr7g0222591
rosa_laevigata RLG00000002044 RLG00000002744 RLG00000002751 RLG00000002752 RLG00000002755 RLG00000002756 RLG00000002757 RLG00000002758 RLG00000002762 RLG00000002763 RLG00000013652
rosa_multiflora Rmu_sc0000328.1_g000008 Rmu_sc0003764.1_g000001 Rmu_sc0003764.1_g000002 Rmu_sc0004199.1_g000004 Rmu_sc0004199.1_g000006 Rmu_sc0004199.1_g000014 Rmu_sc0004199.1_g000019 Rmu_sc0004199.1_g000022 Rmu_sc0005063.1_g000018 Rmu_sc0006422.1_g000030 Rmu_sc0006422.1_g000031 Rmu_sc0009579.1_g000011 Rmu_sc0009579.1_g000017 Rmu_sc0016182.1_g000005 Rmu_sc0016182.1_g000007 Rmu_sc0016279.1_g000002 Rmu_ssc0000387.1_g000031
rosa_roxburghii Rroxscaffold_1G00027390 Rroxscaffold_2G00146810 Rroxscaffold_3G00236600 Rroxscaffold_3G00236620 Rroxscaffold_3G00245350 Rroxscaffold_3G00245400 Rroxscaffold_3G00245440 Rroxscaffold_3G00245480 Rroxscaffold_3G00245560 Rroxscaffold_7G00195770
rosa_rugosa Rorug02G0047800 Rorug02G0047900 Rorug05G0276800 Rorug06G0071900 Rorug07G0145400 Rorug07G0145500 Rorug07G0145600 Rorug07G0145700 Rorug07G0145700 Rorug07G0145800 Rorug07G0211200
rosa_samantha Rh5BG359700 Rh6AG187600 Rh6DG181500 Rh7AG278000 Rh7AG278900 Rh7AG279800 Rh7AG279900 Rh7AG280100 Rh7AG280400 Rh7AG280700 Rh7AG281200 Rh7AG354300 Rh7AG354800 Rh7BG272300 Rh7BG272500 Rh7BG272600 Rh7BG272700 Rh7BG272800 Rh7BG273000 Rh7BG343200 Rh7CG297000 Rh7CG297900 Rh7CG298100 Rh7CG298800 Rh7CG299100 Rh7CG299300 Rh7CG299400 Rh7CG300000 Rh7CG300200 Rh7CG300600 Rh7CG371800 Rh7CG371900
rosa_wichuraiana Rw5G032880 Rw6G016270 Rw7G023930 Rw7G023980 Rw7G023990 Rw7G024000 Rw7G024010 Rw7G024020 Rw7G024030 Rw7G029800 Rw7G030090 Rw7G030140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 56
Acc36I ACCTGC 1 cut(s) 236
AccB1I GGYRCC 1 cut(s) 133
AfiI CCNNNNNNNGG 3 cut(s) 193, 245, 409
AgsI TTSAA 2 cut(s) 154, 168
AluBI AGCT 1 cut(s) 277
AluI AGCT 1 cut(s) 277
Ama87I CYCGRG 2 cut(s) 338, 403
AoxI GGCC 3 cut(s) 68, 118, 263
ApeKI GCWGC 2 cut(s) 146, 206
ArsI GACNNNNNNTTYG 2 cut(s) 80, 112
AspS9I GGNCC 1 cut(s) 263
AsuC2I CCSGG 2 cut(s) 404, 405
AsuHPI GGTGA 1 cut(s) 208
AvaI CYCGRG 2 cut(s) 338, 403
AxyI CCTNAGG 1 cut(s) 122
BanI GGYRCC 1 cut(s) 133
BanII GRGCYC 1 cut(s) 410
BauI CACGAG 1 cut(s) 78
BbvI GCAGC 2 cut(s) 158, 218
BccI CCATC 1 cut(s) 407
BciVI GTATCC 1 cut(s) 453
BclI TGATCA 2 cut(s) 109, 198
BcnI CCSGG 2 cut(s) 404, 405
BfuAI ACCTGC 1 cut(s) 236
BfuI GTATCC 1 cut(s) 453
BisI GCNGC 2 cut(s) 147, 207
BlsI GCNGC 2 cut(s) 148, 208
Bme1390I CCNGG 2 cut(s) 404, 405
BmeT110I CYCGRG 2 cut(s) 338, 403
BmgT120I GGNCC 1 cut(s) 263
BmiI GGNNCC 1 cut(s) 135
BmrFI CCNGG 2 cut(s) 404, 405
BmsI GCATC 2 cut(s) 81, 343
Bpu10I CCTNAGC 1 cut(s) 254
BpuMI CCSGG 2 cut(s) 404, 405
BsaJI CCNNGG 1 cut(s) 403
BsaXI ACNNNNNCTCC 2 cut(s) 288, 318
Bsc4I CCNNNNNNNGG 3 cut(s) 193, 245, 409
Bse1I ACTGG 1 cut(s) 137
Bse21I CCTNAGG 1 cut(s) 122
Bse3DI GCAATG 1 cut(s) 141
BseDI CCNNGG 1 cut(s) 403
BseGI GGATG 1 cut(s) 418
BseLI CCNNNNNNNGG 3 cut(s) 193, 245, 409
BseMI GCAATG 1 cut(s) 141
BseMII CTCAG 1 cut(s) 268
BseNI ACTGG 1 cut(s) 137
BseRI GAGGAG 1 cut(s) 66
BseXI GCAGC 2 cut(s) 158, 218
BshFI GGCC 3 cut(s) 70, 120, 265
BshNI GGYRCC 1 cut(s) 133
BsiHKCI CYCGRG 2 cut(s) 338, 403
BsiSI CCGG 2 cut(s) 62, 404
BslFI GGGAC 1 cut(s) 386
BslI CCNNNNNNNGG 3 cut(s) 193, 245, 409
BsmFI GGGAC 1 cut(s) 386
BsmI GAATGC 1 cut(s) 417
BsnI GGCC 3 cut(s) 70, 120, 265
BsoBI CYCGRG 2 cut(s) 338, 403
Bsp1286I GDGCHC 1 cut(s) 410
Bsp143I GATC 2 cut(s) 109, 198
BspANI GGCC 3 cut(s) 70, 120, 265
BspCNI CTCAG 1 cut(s) 267
BspLI GGNNCC 1 cut(s) 135
BspMI ACCTGC 1 cut(s) 236
BspT107I GGYRCC 1 cut(s) 133
BsrDI GCAATG 1 cut(s) 141
BsrI ACTGG 1 cut(s) 137
BssECI CCNNGG 1 cut(s) 403
BssMI GATC 2 cut(s) 109, 198
BssSI CACGAG 1 cut(s) 78
Bst2BI CACGAG 1 cut(s) 78
BstDEI CTNAG 2 cut(s) 122, 254
BstENI CCTNNNNNAGG 1 cut(s) 243
BstF5I GGATG 1 cut(s) 418
BstKTI GATC 2 cut(s) 112, 201
BstMBI GATC 2 cut(s) 109, 198
BstMWI GCNNNNNNNGC 1 cut(s) 414
BstSCI CCNGG 2 cut(s) 402, 403
BstV1I GCAGC 2 cut(s) 158, 218
Bsu36I CCTNAGG 1 cut(s) 122
BsuI GTATCC 1 cut(s) 453
BsuRI GGCC 3 cut(s) 70, 120, 265
BtsCI GGATG 1 cut(s) 418
BveI ACCTGC 1 cut(s) 236
Cfr13I GGNCC 1 cut(s) 263
Cfr9I CCCGGG 1 cut(s) 403
CviJI RGCY 8 cut(s) 70, 120, 149, 253, 265, 277, 320, 408
CviKI_1 RGCY 8 cut(s) 70, 120, 149, 253, 265, 277, 320, 408
DdeI CTNAG 2 cut(s) 122, 254
DpnI GATC 2 cut(s) 111, 200
DpnII GATC 2 cut(s) 109, 198
Eco147I AGGCCT 1 cut(s) 120
Eco24I GRGCYC 1 cut(s) 410
Eco81I CCTNAGG 1 cut(s) 122
Eco88I CYCGRG 2 cut(s) 338, 403
EcoNI CCTNNNNNAGG 1 cut(s) 243
EcoO109I RGGNCCY 1 cut(s) 263
EcoT38I GRGCYC 1 cut(s) 410
FaiI YATR 5 cut(s) 20, 56, 104, 281, 394
FaqI GGGAC 1 cut(s) 386
FbaI TGATCA 2 cut(s) 109, 198
Fnu4HI GCNGC 2 cut(s) 147, 207
FokI GGATG 1 cut(s) 425
FriOI GRGCYC 1 cut(s) 410
Fsp4HI GCNGC 2 cut(s) 147, 207
GluI GCNGC 2 cut(s) 147, 207
HaeIII GGCC 3 cut(s) 70, 120, 265
HapII CCGG 2 cut(s) 62, 404
HincII GTYRAC 1 cut(s) 455
HindII GTYRAC 1 cut(s) 455
HindIII AAGCTT 1 cut(s) 275
HpaII CCGG 2 cut(s) 62, 404
HphI GGTGA 1 cut(s) 208
Hpy166II GTNNAC 1 cut(s) 455
Hpy188I TCNGA 2 cut(s) 100, 412
Hpy188III TCNNGA 3 cut(s) 80, 154, 338
Hpy8I GTNNAC 1 cut(s) 455
HpyAV CCTTC 4 cut(s) 160, 174, 254, 293
HpyCH4IV ACGT 1 cut(s) 330
HpyCH4V TGCA 2 cut(s) 146, 291
HpyF10VI GCNNNNNNNGC 1 cut(s) 414
HpyF3I CTNAG 2 cut(s) 122, 254
HpySE526I ACGT 1 cut(s) 330
Ksp22I TGATCA 2 cut(s) 109, 198
Kzo9I GATC 2 cut(s) 109, 198
LmnI GCTCC 1 cut(s) 20
Lsp1109I GCAGC 2 cut(s) 158, 218
LweI GCATC 2 cut(s) 81, 343
MaeII ACGT 1 cut(s) 330
MaeIII GTNAC 1 cut(s) 331
MalI GATC 2 cut(s) 111, 200
MboI GATC 2 cut(s) 109, 198
MhlI GDGCHC 1 cut(s) 410
MluCI AATT 1 cut(s) 345
MnlI CCTC 3 cut(s) 87, 334, 376
MseI TTAA 1 cut(s) 33
MspI CCGG 2 cut(s) 62, 404
MspR9I CCNGG 2 cut(s) 404, 405
Mva1269I GAATGC 1 cut(s) 417
MwoI GCNNNNNNNGC 1 cut(s) 414
NciI CCSGG 2 cut(s) 404, 405
NdeII GATC 2 cut(s) 109, 198
NlaIV GGNNCC 1 cut(s) 135
PaeR7I CTCGAG 1 cut(s) 338
PceI AGGCCT 1 cut(s) 120
PcsI WCGNNNNNNNCGW 1 cut(s) 336
PctI GAATGC 1 cut(s) 417
PkrI GCNGC 2 cut(s) 148, 208
PsiI TTATAA 1 cut(s) 56
PspN4I GGNNCC 1 cut(s) 135
PspPI GGNCC 1 cut(s) 263
SaqAI TTAA 1 cut(s) 33
SatI GCNGC 2 cut(s) 147, 207
Sau3AI GATC 2 cut(s) 109, 198
Sau96I GGNCC 1 cut(s) 263
ScrFI CCNGG 2 cut(s) 404, 405
SduI GDGCHC 1 cut(s) 410
SetI ASST 8 cut(s) 33, 128, 198, 250, 279, 304, 333, 450
SfaNI GCATC 2 cut(s) 81, 343
Sfr274I CTCGAG 1 cut(s) 338
SlaI CTCGAG 1 cut(s) 338
SmaI CCCGGG 1 cut(s) 405
SmlI CTYRAG 1 cut(s) 338
SmoI CTYRAG 1 cut(s) 338
Sse9I AATT 1 cut(s) 345
SseBI AGGCCT 1 cut(s) 120
StuI AGGCCT 1 cut(s) 120
StyD4I CCNGG 2 cut(s) 402, 403
TaiI ACGT 1 cut(s) 333
TaqI TCGA 3 cut(s) 37, 173, 339
TasI AATT 1 cut(s) 345
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TseI GCWGC 2 cut(s) 146, 206
TspGWI ACGGA 1 cut(s) 309
TspMI CCCGGG 1 cut(s) 403
XagI CCTNNNNNAGG 1 cut(s) 243
XhoI CTCGAG 1 cut(s) 338
XmaI CCCGGG 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.