Rw5G032880

Benzyl alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000190
Physical Location & Seq
Reverse (-)
55807793 .. 55808997
1205 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G032880.1

Sequence Viewer

Length: 963 bp
ATGGTGGATTGCACTGGAGAAGGTGTCTTGTTCGCTGAGGCTATTGCTGACGTTACTCTCGAGGAAATTGTAGATGCTATTCGACCCCCTTGCCCTGTGTTAGAGGACTTCCTATGTAATGTCCCTGGCTCGGATGGCATTCTTGGTTGCCCTTTGTTGTTAGTTCAGGTGACCATTTTGAGATGCGGAGGTTTCATATTTGCATTGCGCCTAAACCACACAATGTGTGATGCGCCTGGATTGGTCCAATTCTTGAACACACGACAGGTCTTGAATGCCAGAGATCCACCACGAATTACATGTATACATCACGAATTTGAGGAAATGATTGACTACTCAGATCAGGGCTCTAATGCGGCAGGAATGGGCCATGAAAAACATCTTCCACCACACCTTTCCAATTGCTCTACATTCGACCTTATAACATCCTATTTGTGGAAATGCCGCACAATTGCACTAGAACTTAATCCAGAACAGGTTGTTCGGGTTTCATGCATGGTCAATGCACGTGGGAAGCGCAAAAATCTCCGTCTTCCTTTGGGTTACTACGGCAATGCATTTGCATACCCAGCTGCTGTTTCGGGAGTGAAACAATTGTGTGAAAGTCCGTTGGGATATACACTGGAGTTGGTGATGAAGGCTAAAGATGAAATGAATGAAGAGTACATGAGATCAGTGGCCGATCTTATGGTCATAAGAGGACGGCCTCTATATACATTGAACGGGAACTTCATAGTTTCAGATAATACACGTACTGGCTTTGGAGAGGTCAACTTGGGGTGGGGAAAGCCAGCATTTTCTGGACCTCCCAAGGCCTTGAACCTTGTTAGTTTCTATGTCCAGCACAAAACGGAAAAAGAGGATGGGATTTTGGTGCCAGTGTGCTTGCCATTATGGAGTATGGCGAGATTTCAGCAGGAACTCGAGGAGATGACATCTTCGGCGATAGTGGAAAATAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

320

Amino Acids

35.49

Weight (kDa)

5.34

Isoelectric Point (pI)

40.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 2 - 95 1e-17 Transferase family
Transferase PF02458 136 - 311 7.5e-24 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000190)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03480 AT5G17540
fragaria_vesca FvH4_2g12510 FvH4_3g38880 FvH4_3g40890 FvH4_5g24240 FvH4_5g24250 FvH4_5g24270 FvH4_5g24273 FvH4_6g05391 FvH4_6g05392
malus_domestica MD00G1201900.v1.1 MD00G1202100.v1.1 MD02G1001400.v1.1 MD02G1013900.v1.1 MD02G1014800.v1.1 MD02G1015000.v1.1 MD02G1015200.v1.1 MD03G1080200.v1.1 MD06G1016200.v1.1 MD06G1016500.v1.1 MD06G1017700.v1.1 MD06G1018100.v1.1 MD06G1018200.v1.1 MD06G1018400.v1.1 MD06G1018700.v1.1 MD06G1018800.v1.1 MD06G1019000.v1.1 MD06G1019100.v1.1 MD06G1019300.v1.1 MD06G1019800.v1.1 MD06G1020400.v1.1 MD06G1020700.v1.1 MD06G1020800.v1.1 MD06G1020900.v1.1 MD12G1038300.v1.1 MD12G1039400.v1.1
prunus_persica Prupe.5G017800_v2.0.a1 Prupe.5G017900_v2.0.a1 Prupe.5G018000_v2.0.a1 Prupe.5G018100_v2.0.a1 Prupe.5G018200_v2.0.a1 Prupe.8G000100_v2.0.a1
pyrus_communis pycom02g01330 pycom02g01390 pycom03g06420 pycom06g01300 pycom06g01320 pycom06g01340 pycom06g01500 pycom06g01510 pycom06g01520 pycom12g03300 pycom12g03320
rosa_chinensis RchiOBHm_Chr5g0051841 RchiOBHm_Chr6g0272991 RchiOBHm_Chr7g0213951 RchiOBHm_Chr7g0214051 RchiOBHm_Chr7g0214131 RchiOBHm_Chr7g0214161 RchiOBHm_Chr7g0214231 RchiOBHm_Chr7g0214321 RchiOBHm_Chr7g0214351 RchiOBHm_Chr7g0214391 RchiOBHm_Chr7g0214451 RchiOBHm_Chr7g0222591
rosa_laevigata RLG00000002044 RLG00000002744 RLG00000002751 RLG00000002752 RLG00000002755 RLG00000002756 RLG00000002757 RLG00000002758 RLG00000002762 RLG00000002763 RLG00000013652
rosa_multiflora Rmu_sc0000328.1_g000008 Rmu_sc0003764.1_g000001 Rmu_sc0003764.1_g000002 Rmu_sc0004199.1_g000004 Rmu_sc0004199.1_g000006 Rmu_sc0004199.1_g000014 Rmu_sc0004199.1_g000019 Rmu_sc0004199.1_g000022 Rmu_sc0005063.1_g000018 Rmu_sc0006422.1_g000030 Rmu_sc0006422.1_g000031 Rmu_sc0009579.1_g000011 Rmu_sc0009579.1_g000017 Rmu_sc0016182.1_g000005 Rmu_sc0016182.1_g000007 Rmu_sc0016279.1_g000002 Rmu_ssc0000387.1_g000031
rosa_roxburghii Rroxscaffold_1G00027390 Rroxscaffold_2G00146810 Rroxscaffold_3G00236600 Rroxscaffold_3G00236620 Rroxscaffold_3G00245350 Rroxscaffold_3G00245400 Rroxscaffold_3G00245440 Rroxscaffold_3G00245480 Rroxscaffold_3G00245560 Rroxscaffold_7G00195770
rosa_rugosa Rorug02G0047800 Rorug02G0047900 Rorug05G0276800 Rorug06G0071900 Rorug07G0145400 Rorug07G0145500 Rorug07G0145600 Rorug07G0145700 Rorug07G0145700 Rorug07G0145800 Rorug07G0211200
rosa_samantha Rh5BG359700 Rh6AG187600 Rh6DG181500 Rh7AG278000 Rh7AG278900 Rh7AG279800 Rh7AG279900 Rh7AG280100 Rh7AG280400 Rh7AG280700 Rh7AG281200 Rh7AG354300 Rh7AG354800 Rh7BG272300 Rh7BG272500 Rh7BG272600 Rh7BG272700 Rh7BG272800 Rh7BG273000 Rh7BG343200 Rh7CG297000 Rh7CG297900 Rh7CG298100 Rh7CG298800 Rh7CG299100 Rh7CG299300 Rh7CG299400 Rh7CG300000 Rh7CG300200 Rh7CG300600 Rh7CG371800 Rh7CG371900
rosa_wichuraiana Rw5G032880 Rw6G016270 Rw7G023930 Rw7G023980 Rw7G023990 Rw7G024000 Rw7G024010 Rw7G024020 Rw7G024030 Rw7G029800 Rw7G030090 Rw7G030140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 422
AccB1I GGYRCC 1 cut(s) 874
AccI GTMKAC 1 cut(s) 304
AciI CCGC 3 cut(s) 186, 356, 445
AclWI GGATC 1 cut(s) 278
AcoI YGGCCR 1 cut(s) 678
AcsI RAATTY 1 cut(s) 314
AcvI CACGTG 1 cut(s) 509
AdeI CACNNNGTG 1 cut(s) 225
AfaI GTAC 2 cut(s) 665, 754
AfiI CCNNNNNNNGG 2 cut(s) 130, 435
AflIII ACRYGT 2 cut(s) 299, 749
AgsI TTSAA 4 cut(s) 256, 274, 721, 820
AjnI CCWGG 2 cut(s) 124, 235
AluBI AGCT 1 cut(s) 572
AluI AGCT 1 cut(s) 572
AlwI GGATC 1 cut(s) 278
AlwNI CAGNNNCTG 1 cut(s) 575
Ama87I CYCGRG 2 cut(s) 59, 923
AoxI GGCC 4 cut(s) 367, 678, 704, 813
ApeKI GCWGC 1 cut(s) 572
ApoI RAATTY 1 cut(s) 314
AspLEI GCGC 3 cut(s) 210, 235, 519
AspS9I GGNCC 3 cut(s) 244, 367, 803
AsuHPI GGTGA 2 cut(s) 181, 643
AvaI CYCGRG 2 cut(s) 59, 923
AvaII GGWCC 2 cut(s) 244, 803
BanI GGYRCC 1 cut(s) 874
BanII GRGCYC 1 cut(s) 350
BbrPI CACGTG 1 cut(s) 509
BbsI GAAGAC 1 cut(s) 524
BbvCI CCTCAGC 1 cut(s) 36
BbvI GCAGC 1 cut(s) 559
BccI CCATC 2 cut(s) 128, 857
BceAI ACGGC 2 cut(s) 565, 719
BcgI CGANNNNNNTGC 2 cut(s) 72, 106
BciT130I CCWGG 2 cut(s) 126, 237
BfaI CTAG 1 cut(s) 458
BisI GCNGC 3 cut(s) 357, 445, 573
BlsI GCNGC 3 cut(s) 358, 446, 574
Bme1390I CCNGG 2 cut(s) 126, 237
Bme18I GGWCC 2 cut(s) 244, 803
BmeT110I CYCGRG 2 cut(s) 59, 923
BmgT120I GGNCC 3 cut(s) 244, 367, 803
BmiI GGNNCC 1 cut(s) 876
BmrFI CCNGG 2 cut(s) 126, 237
BmsI GCATC 3 cut(s) 64, 173, 220
BpiI GAAGAC 1 cut(s) 524
BpmI CTGGAG 2 cut(s) 36, 644
Bpu10I CCTNAGC 1 cut(s) 36
BsaAI YACGTR 2 cut(s) 509, 752
BsaJI CCNNGG 2 cut(s) 124, 810
BsaXI ACNNNNNCTCC 2 cut(s) 9, 39
Bsc4I CCNNNNNNNGG 2 cut(s) 130, 435
Bse1I ACTGG 4 cut(s) 19, 627, 760, 878
Bse3DI GCAATG 2 cut(s) 203, 559
BseBI CCWGG 2 cut(s) 126, 237
BseDI CCNNGG 2 cut(s) 124, 810
BseGI GGATG 3 cut(s) 139, 425, 868
BseLI CCNNNNNNNGG 2 cut(s) 130, 435
BseMI GCAATG 2 cut(s) 203, 559
BseMII CTCAG 2 cut(s) 27, 351
BseNI ACTGG 4 cut(s) 19, 627, 760, 878
BseRI GAGGAG 1 cut(s) 941
BseXI GCAGC 1 cut(s) 559
BseYI CCCAGC 1 cut(s) 568
BshFI GGCC 4 cut(s) 369, 680, 706, 815
BshNI GGYRCC 1 cut(s) 874
BsiHKCI CYCGRG 2 cut(s) 59, 923
BslFI GGGAC 1 cut(s) 107
BslI CCNNNNNNNGG 2 cut(s) 130, 435
BsmFI GGGAC 1 cut(s) 107
BsmI GAATGC 2 cut(s) 138, 280
BsnI GGCC 4 cut(s) 369, 680, 706, 815
BsoBI CYCGRG 2 cut(s) 59, 923
Bsp1286I GDGCHC 1 cut(s) 350
Bsp143I GATC 4 cut(s) 283, 340, 671, 682
BspACI CCGC 3 cut(s) 186, 356, 445
BspANI GGCC 4 cut(s) 369, 680, 706, 815
BspCNI CTCAG 2 cut(s) 28, 350
BspLI GGNNCC 1 cut(s) 876
BspPI GGATC 1 cut(s) 278
BspT107I GGYRCC 1 cut(s) 874
BsrDI GCAATG 2 cut(s) 203, 559
BsrI ACTGG 4 cut(s) 19, 627, 760, 878
BssECI CCNNGG 2 cut(s) 124, 810
BssMI GATC 4 cut(s) 283, 340, 671, 682
BssNAI GTATAC 1 cut(s) 305
BssT1I CCWWGG 1 cut(s) 810
Bst1107I GTATAC 1 cut(s) 305
Bst2UI CCWGG 2 cut(s) 126, 237
Bst6I CTCTTC 1 cut(s) 654
BstBAI YACGTR 2 cut(s) 509, 752
BstC8I GCNNGC 2 cut(s) 792, 887
BstDEI CTNAG 2 cut(s) 36, 337
BstEII GGTNACC 1 cut(s) 169
BstF5I GGATG 3 cut(s) 139, 425, 868
BstHHI GCGC 3 cut(s) 210, 235, 519
BstKTI GATC 4 cut(s) 286, 343, 674, 685
BstMBI GATC 4 cut(s) 283, 340, 671, 682
BstMWI GCNNNNNNNGC 2 cut(s) 135, 569
BstNI CCWGG 2 cut(s) 126, 237
BstNSI RCATGY 1 cut(s) 303
BstPI GGTNACC 1 cut(s) 169
BstSCI CCNGG 2 cut(s) 124, 235
BstV1I GCAGC 1 cut(s) 559
BstV2I GAAGAC 1 cut(s) 524
BstX2I RGATCY 1 cut(s) 283
BstYI RGATCY 1 cut(s) 283
BstZ17I GTATAC 1 cut(s) 305
BsuRI GGCC 4 cut(s) 369, 680, 706, 815
BtsCI GGATG 3 cut(s) 139, 425, 868
BtsIMutI CAGTG 4 cut(s) 12, 620, 681, 885
Cac8I GCNNGC 2 cut(s) 792, 887
CaiI CAGNNNCTG 1 cut(s) 575
CfoI GCGC 3 cut(s) 210, 235, 519
Cfr13I GGNCC 3 cut(s) 244, 367, 803
Csp6I GTAC 2 cut(s) 664, 753
CspCI CAANNNNNGTGG 2 cut(s) 490, 525
CviAII CATG 5 cut(s) 300, 371, 492, 496, 667
CviQI GTAC 2 cut(s) 664, 753
DdeI CTNAG 2 cut(s) 36, 337
DpnI GATC 4 cut(s) 285, 342, 673, 684
DpnII GATC 4 cut(s) 283, 340, 671, 682
DraIII CACNNNGTG 1 cut(s) 225
EaeI YGGCCR 1 cut(s) 678
Eam1104I CTCTTC 1 cut(s) 654
EarI CTCTTC 1 cut(s) 654
Eco130I CCWWGG 1 cut(s) 810
Eco147I AGGCCT 1 cut(s) 815
Eco24I GRGCYC 1 cut(s) 350
Eco47I GGWCC 2 cut(s) 244, 803
Eco72I CACGTG 1 cut(s) 509
Eco88I CYCGRG 2 cut(s) 59, 923
Eco91I GGTNACC 1 cut(s) 169
EcoO65I GGTNACC 1 cut(s) 169
EcoRII CCWGG 2 cut(s) 124, 235
EcoT14I CCWWGG 1 cut(s) 810
EcoT22I ATGCAT 2 cut(s) 497, 559
EcoT38I GRGCYC 1 cut(s) 350
ErhI CCWWGG 1 cut(s) 810
FaeI CATG 5 cut(s) 303, 374, 495, 499, 670
FaqI GGGAC 1 cut(s) 107
FatI CATG 5 cut(s) 299, 370, 491, 495, 666
FblI GTMKAC 1 cut(s) 304
Fnu4HI GCNGC 3 cut(s) 357, 445, 573
FokI GGATG 3 cut(s) 146, 412, 875
FriOI GRGCYC 1 cut(s) 350
Fsp4HI GCNGC 3 cut(s) 357, 445, 573
FspBI CTAG 1 cut(s) 458
GlaI GCGC 3 cut(s) 209, 234, 518
GluI GCNGC 3 cut(s) 357, 445, 573
GsaI CCCAGC 1 cut(s) 572
GsuI CTGGAG 2 cut(s) 36, 644
HaeIII GGCC 4 cut(s) 369, 680, 706, 815
HhaI GCGC 3 cut(s) 210, 235, 519
Hin1II CATG 5 cut(s) 303, 374, 495, 499, 670
Hin6I GCGC 3 cut(s) 208, 233, 517
HinP1I GCGC 3 cut(s) 208, 233, 517
HincII GTYRAC 1 cut(s) 772
HindII GTYRAC 1 cut(s) 772
HphI GGTGA 2 cut(s) 181, 643
Hpy166II GTNNAC 2 cut(s) 305, 772
Hpy188I TCNGA 3 cut(s) 133, 340, 742
Hpy188III TCNNGA 7 cut(s) 59, 253, 271, 311, 470, 582, 801
Hpy8I GTNNAC 2 cut(s) 305, 772
HpyAV CCTTC 2 cut(s) 14, 631
HpyCH4IV ACGT 3 cut(s) 51, 508, 751
HpyCH4V TGCA 7 cut(s) 12, 203, 455, 495, 506, 557, 563
HpyF10VI GCNNNNNNNGC 2 cut(s) 135, 569
HpyF3I CTNAG 2 cut(s) 36, 337
HpySE526I ACGT 3 cut(s) 51, 508, 751
Hsp92II CATG 5 cut(s) 303, 374, 495, 499, 670
HspAI GCGC 3 cut(s) 208, 233, 517
Kzo9I GATC 4 cut(s) 283, 340, 671, 682
Lsp1109I GCAGC 1 cut(s) 559
LweI GCATC 3 cut(s) 64, 173, 220
MaeI CTAG 1 cut(s) 458
MaeII ACGT 3 cut(s) 51, 508, 751
MaeIII GTNAC 3 cut(s) 52, 169, 542
MalI GATC 4 cut(s) 285, 342, 673, 684
MboI GATC 4 cut(s) 283, 340, 671, 682
MboII GAAGA 4 cut(s) 374, 524, 671, 930
MfeI CAATTG 3 cut(s) 400, 450, 593
MflI RGATCY 1 cut(s) 283
MhlI GDGCHC 1 cut(s) 350
MluCI AATT 7 cut(s) 66, 248, 294, 314, 400, 450, 593
Mph1103I ATGCAT 2 cut(s) 497, 559
MseI TTAA 1 cut(s) 465
MspA1I CMGCKG 1 cut(s) 572
MspR9I CCNGG 2 cut(s) 126, 237
MunI CAATTG 3 cut(s) 400, 450, 593
Mva1269I GAATGC 2 cut(s) 138, 280
MvaI CCWGG 2 cut(s) 126, 237
MwoI GCNNNNNNNGC 2 cut(s) 135, 569
NdeII GATC 4 cut(s) 283, 340, 671, 682
NlaIII CATG 5 cut(s) 303, 374, 495, 499, 670
NlaIV GGNNCC 1 cut(s) 876
NmuCI GTSAC 1 cut(s) 169
NsiI ATGCAT 2 cut(s) 497, 559
NspI RCATGY 1 cut(s) 303
PaeR7I CTCGAG 2 cut(s) 59, 923
PceI AGGCCT 1 cut(s) 815
PciI ACATGT 1 cut(s) 299
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PctI GAATGC 2 cut(s) 138, 280
PkrI GCNGC 3 cut(s) 358, 446, 574
PmaCI CACGTG 1 cut(s) 509
PmlI CACGTG 1 cut(s) 509
Ppu21I YACGTR 2 cut(s) 509, 752
PscI ACATGT 1 cut(s) 299
PsiI TTATAA 1 cut(s) 422
Psp6I CCWGG 2 cut(s) 124, 235
PspCI CACGTG 1 cut(s) 509
PspEI GGTNACC 1 cut(s) 169
PspFI CCCAGC 1 cut(s) 568
PspGI CCWGG 2 cut(s) 124, 235
PspN4I GGNNCC 1 cut(s) 876
PspPI GGNCC 3 cut(s) 244, 367, 803
PspXI VCTCGAGB 1 cut(s) 923
PstNI CAGNNNCTG 1 cut(s) 575
PsuI RGATCY 1 cut(s) 283
PvuII CAGCTG 1 cut(s) 572
RsaI GTAC 2 cut(s) 665, 754
RsaNI GTAC 2 cut(s) 664, 753
SaqAI TTAA 1 cut(s) 465
SatI GCNGC 3 cut(s) 357, 445, 573
Sau3AI GATC 4 cut(s) 283, 340, 671, 682
Sau96I GGNCC 3 cut(s) 244, 367, 803
ScrFI CCNGG 2 cut(s) 126, 237
SduI GDGCHC 1 cut(s) 350
SfaNI GCATC 3 cut(s) 64, 173, 220
Sfr274I CTCGAG 2 cut(s) 59, 923
SinI GGWCC 2 cut(s) 244, 803
SlaI CTCGAG 2 cut(s) 59, 923
SmlI CTYRAG 2 cut(s) 59, 923
SmoI CTYRAG 2 cut(s) 59, 923
Sse9I AATT 7 cut(s) 66, 248, 294, 314, 400, 450, 593
SseBI AGGCCT 1 cut(s) 815
SsiI CCGC 3 cut(s) 186, 356, 445
SspMI CTAG 1 cut(s) 458
StuI AGGCCT 1 cut(s) 815
StyD4I CCNGG 2 cut(s) 124, 235
StyI CCWWGG 1 cut(s) 810
TaiI ACGT 3 cut(s) 54, 511, 754
TaqI TCGA 4 cut(s) 60, 82, 414, 924
TasI AATT 7 cut(s) 66, 248, 294, 314, 400, 450, 593
TatI WGTACW 1 cut(s) 663
TauI GCSGC 2 cut(s) 359, 447
Tru1I TTAA 1 cut(s) 465
Tru9I TTAA 1 cut(s) 465
TscAI CASTG 4 cut(s) 19, 627, 681, 885
TseFI GTSAC 1 cut(s) 169
TseI GCWGC 1 cut(s) 572
Tsp45I GTSAC 1 cut(s) 169
TspDTI ATGAA 8 cut(s) 184, 387, 480, 650, 663, 668, 672, 721
TspGWI ACGGA 3 cut(s) 518, 597, 866
TspRI CASTG 4 cut(s) 19, 627, 681, 885
VpaK11BI GGWCC 2 cut(s) 244, 803
XapI RAATTY 1 cut(s) 314
XceI RCATGY 1 cut(s) 303
XhoI CTCGAG 2 cut(s) 59, 923
XmiI GTMKAC 1 cut(s) 304
XspI CTAG 1 cut(s) 458
Zsp2I ATGCAT 2 cut(s) 497, 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.