Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000190

Physical Location & Seq

Genomic Coordinates Forward (+)

45252320 .. 45255404

Gene Structure 3085 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG354300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGATCCGAAACAGATTGTCCGTCTGTCATGCATAGTTAATGCACGTGGTAAACACAACAATGTATGTCTTCCTCGGGGATACTATGGCAACGCATTTGCATATCCGGCTGCTGTTTCAACTGCAGAACGTTTATGTAACAGTCCGTTGGGATATGCAGTGGAGTTGGTGAAAAAATCGAAAGCTAAAATGAGTGAAGAGTACTTAAGATCTGTGGCCACAGATTTTACGGAGATAAGAGGACGACCTCCACTTGCAATGAAAGGCATTAGTGACTTTACAGTTTCGGATAACACACGAACAGGTGCAGCAGAAATTGATTTCGGGTGGGGAAAGCCAATATATGCTGGAGTTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006631 GO:0006690 GO:0008150 GO:0008152 GO:0008374 GO:0009987 GO:0010327 GO:0010597 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0019372 GO:0019752 GO:0032787 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0071704 GO:1901568

KEGG Pathways

Metabolic & Signaling

ko00592 ko01110 map00592 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

119

Amino Acids

12.96

Weight (kDa)

9.24

Isoelectric Point (pI)

40.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	2 - 117	4e-16	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03480 AT5G17540
fragaria_vesca	FvH4_2g12510 FvH4_3g38880 FvH4_3g40890 FvH4_5g24240 FvH4_5g24250 FvH4_5g24270 FvH4_5g24273 FvH4_6g05391 FvH4_6g05392
malus_domestica	MD00G1201900.v1.1 MD00G1202100.v1.1 MD02G1001400.v1.1 MD02G1013900.v1.1 MD02G1014800.v1.1 MD02G1015000.v1.1 MD02G1015200.v1.1 MD03G1080200.v1.1 MD06G1016200.v1.1 MD06G1016500.v1.1 MD06G1017700.v1.1 MD06G1018100.v1.1 MD06G1018200.v1.1 MD06G1018400.v1.1 MD06G1018700.v1.1 MD06G1018800.v1.1 MD06G1019000.v1.1 MD06G1019100.v1.1 MD06G1019300.v1.1 MD06G1019800.v1.1 MD06G1020400.v1.1 MD06G1020700.v1.1 MD06G1020800.v1.1 MD06G1020900.v1.1 MD12G1038300.v1.1 MD12G1039400.v1.1
prunus_persica	Prupe.5G017800_v2.0.a1 Prupe.5G017900_v2.0.a1 Prupe.5G018000_v2.0.a1 Prupe.5G018100_v2.0.a1 Prupe.5G018200_v2.0.a1 Prupe.8G000100_v2.0.a1
pyrus_communis	pycom02g01330 pycom02g01390 pycom03g06420 pycom06g01300 pycom06g01320 pycom06g01340 pycom06g01500 pycom06g01510 pycom06g01520 pycom12g03300 pycom12g03320
rosa_chinensis	RchiOBHm_Chr5g0051841 RchiOBHm_Chr6g0272991 RchiOBHm_Chr7g0213951 RchiOBHm_Chr7g0214051 RchiOBHm_Chr7g0214131 RchiOBHm_Chr7g0214161 RchiOBHm_Chr7g0214231 RchiOBHm_Chr7g0214321 RchiOBHm_Chr7g0214351 RchiOBHm_Chr7g0214391 RchiOBHm_Chr7g0214451 RchiOBHm_Chr7g0222591
rosa_laevigata	RLG00000002044 RLG00000002744 RLG00000002751 RLG00000002752 RLG00000002755 RLG00000002756 RLG00000002757 RLG00000002758 RLG00000002762 RLG00000002763 RLG00000013652
rosa_multiflora	Rmu_sc0000328.1_g000008 Rmu_sc0003764.1_g000001 Rmu_sc0003764.1_g000002 Rmu_sc0004199.1_g000004 Rmu_sc0004199.1_g000006 Rmu_sc0004199.1_g000014 Rmu_sc0004199.1_g000019 Rmu_sc0004199.1_g000022 Rmu_sc0005063.1_g000018 Rmu_sc0006422.1_g000030 Rmu_sc0006422.1_g000031 Rmu_sc0009579.1_g000011 Rmu_sc0009579.1_g000017 Rmu_sc0016182.1_g000005 Rmu_sc0016182.1_g000007 Rmu_sc0016279.1_g000002 Rmu_ssc0000387.1_g000031
rosa_roxburghii	Rroxscaffold_1G00027390 Rroxscaffold_2G00146810 Rroxscaffold_3G00236600 Rroxscaffold_3G00236620 Rroxscaffold_3G00245350 Rroxscaffold_3G00245400 Rroxscaffold_3G00245440 Rroxscaffold_3G00245480 Rroxscaffold_3G00245560 Rroxscaffold_7G00195770
rosa_rugosa	Rorug02G0047800 Rorug02G0047900 Rorug05G0276800 Rorug06G0071900 Rorug07G0145400 Rorug07G0145500 Rorug07G0145600 Rorug07G0145700 Rorug07G0145700 Rorug07G0145800 Rorug07G0211200
rosa_samantha	Rh5BG359700 Rh6AG187600 Rh6DG181500 Rh7AG278000 Rh7AG278900 Rh7AG279800 Rh7AG279900 Rh7AG280100 Rh7AG280400 Rh7AG280700 Rh7AG281200 Rh7AG354300 Rh7AG354800 Rh7BG272300 Rh7BG272500 Rh7BG272600 Rh7BG272700 Rh7BG272800 Rh7BG273000 Rh7BG343200 Rh7CG297000 Rh7CG297900 Rh7CG298100 Rh7CG298800 Rh7CG299100 Rh7CG299300 Rh7CG299400 Rh7CG300000 Rh7CG300200 Rh7CG300600 Rh7CG371800 Rh7CG371900
rosa_wichuraiana	Rw5G032880 Rw6G016270 Rw7G023930 Rw7G023980 Rw7G023990 Rw7G024000 Rw7G024010 Rw7G024020 Rw7G024030 Rw7G029800 Rw7G030090 Rw7G030140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	130
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	216
AcvI	CACGTG	1 cut(s)	47
AfaI	GTAC	1 cut(s)	203
AflII	CTTAAG	1 cut(s)	205
AgsI	TTSAA	1 cut(s)	120
AluBI	AGCT	1 cut(s)	185
AluI	AGCT	1 cut(s)	185
AlwI	GGATC	1 cut(s)	12
Ama87I	CYCGRG	1 cut(s)	75
AoxI	GGCC	1 cut(s)	216
ApeKI	GCWGC	2 cut(s)	110, 308
AsuHPI	GGTGA	1 cut(s)	181
AvaI	CYCGRG	1 cut(s)	75
BalI	TGGCCA	1 cut(s)	218
BamHI	GGATCC	1 cut(s)	4
BbrPI	CACGTG	1 cut(s)	47
BbsI	GAAGAC	1 cut(s)	62
BbvI	GCAGC	2 cut(s)	97, 320
BciVI	GTATCC	1 cut(s)	74
BfmI	CTRYAG	1 cut(s)	123
BfrI	CTTAAG	1 cut(s)	205
BfuI	GTATCC	1 cut(s)	74
BglII	AGATCT	1 cut(s)	209
BisI	GCNGC	2 cut(s)	111, 309
BlsI	GCNGC	2 cut(s)	112, 310
BmcAI	AGTACT	1 cut(s)	203
BmeT110I	CYCGRG	1 cut(s)	75
BmiI	GGNNCC	1 cut(s)	6
BpiI	GAAGAC	1 cut(s)	62
BsaAI	YACGTR	1 cut(s)	47
BsaJI	CCNNGG	1 cut(s)	74
Bse3DI	GCAATG	1 cut(s)	264
BseDI	CCNNGG	1 cut(s)	74
BseMI	GCAATG	1 cut(s)	264
BseXI	GCAGC	2 cut(s)	97, 320
BsgI	GTGCAG	1 cut(s)	327
BshFI	GGCC	1 cut(s)	218
BsiHKCI	CYCGRG	1 cut(s)	75
BsiSI	CCGG	1 cut(s)	107
BsnI	GGCC	1 cut(s)	218
BsoBI	CYCGRG	1 cut(s)	75
Bsp143I	GATC	2 cut(s)	4, 209
BspANI	GGCC	1 cut(s)	218
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	1 cut(s)	127
BspPI	GGATC	1 cut(s)	12
BspTI	CTTAAG	1 cut(s)	205
BsrDI	GCAATG	1 cut(s)	264
BssECI	CCNNGG	1 cut(s)	74
BssMI	GATC	2 cut(s)	4, 209
Bst4CI	ACNGT	2 cut(s)	143, 283
Bst6I	CTCTTC	1 cut(s)	192
BstAFI	CTTAAG	1 cut(s)	205
BstBAI	YACGTR	1 cut(s)	47
BstKTI	GATC	2 cut(s)	7, 212
BstMBI	GATC	2 cut(s)	4, 209
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 353
BstSFI	CTRYAG	1 cut(s)	123
BstV1I	GCAGC	2 cut(s)	97, 320
BstV2I	GAAGAC	1 cut(s)	62
BstX2I	RGATCY	2 cut(s)	4, 209
BstYI	RGATCY	2 cut(s)	4, 209
BsuI	GTATCC	1 cut(s)	74
BsuRI	GGCC	1 cut(s)	218
BtsI	GCAGTG	1 cut(s)	165
BtsIMutI	CAGTG	1 cut(s)	165
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	1 cut(s)	30
CviJI	RGCY	4 cut(s)	110, 185, 218, 337
CviKI_1	RGCY	4 cut(s)	110, 185, 218, 337
CviQI	GTAC	1 cut(s)	202
DpnI	GATC	2 cut(s)	6, 211
DpnII	GATC	2 cut(s)	4, 209
EaeI	YGGCCR	1 cut(s)	216
Eam1104I	CTCTTC	1 cut(s)	192
EarI	CTCTTC	1 cut(s)	192
Eco72I	CACGTG	1 cut(s)	47
Eco88I	CYCGRG	1 cut(s)	75
EcoT22I	ATGCAT	1 cut(s)	35
FaeI	CATG	1 cut(s)	33
FaiI	YATR	9 cut(s)	31, 35, 67, 87, 103, 136, 156, 343, 345
FatI	CATG	1 cut(s)	29
Fnu4HI	GCNGC	2 cut(s)	111, 309
Fsp4HI	GCNGC	2 cut(s)	111, 309
GluI	GCNGC	2 cut(s)	111, 309
HaeIII	GGCC	1 cut(s)	218
HapII	CCGG	1 cut(s)	107
Hin1II	CATG	1 cut(s)	33
HpaII	CCGG	1 cut(s)	107
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	1 cut(s)	53
Hpy188I	TCNGA	2 cut(s)	9, 289
Hpy8I	GTNNAC	1 cut(s)	53
HpyCH4III	ACNGT	2 cut(s)	143, 283
HpyCH4IV	ACGT	2 cut(s)	46, 130
HpyCH4V	TGCA	7 cut(s)	33, 44, 101, 125, 158, 257, 308
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 353
HpySE526I	ACGT	2 cut(s)	46, 130
Hsp92II	CATG	1 cut(s)	33
Kzo9I	GATC	2 cut(s)	4, 209
LpnPI	CCDG	3 cut(s)	120, 288, 333
Lsp1109I	GCAGC	2 cut(s)	97, 320
MaeII	ACGT	2 cut(s)	46, 130
MaeIII	GTNAC	2 cut(s)	137, 272
MalI	GATC	2 cut(s)	6, 211
MboI	GATC	2 cut(s)	4, 209
MboII	GAAGA	2 cut(s)	62, 209
MflI	RGATCY	2 cut(s)	4, 209
MlsI	TGGCCA	1 cut(s)	218
MluCI	AATT	1 cut(s)	315
MluNI	TGGCCA	1 cut(s)	218
MnlI	CCTC	3 cut(s)	84, 233, 258
Mox20I	TGGCCA	1 cut(s)	218
Mph1103I	ATGCAT	1 cut(s)	35
MscI	TGGCCA	1 cut(s)	218
MseI	TTAA	2 cut(s)	39, 206
MslI	CAYNNNNRTG	1 cut(s)	60
Msp20I	TGGCCA	1 cut(s)	218
MspCI	CTTAAG	1 cut(s)	205
MspI	CCGG	1 cut(s)	107
MwoI	GCNNNNNNNGC	2 cut(s)	107, 353
NdeII	GATC	2 cut(s)	4, 209
NlaIII	CATG	1 cut(s)	33
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	272
NsiI	ATGCAT	1 cut(s)	35
PkrI	GCNGC	2 cut(s)	112, 310
PmaCI	CACGTG	1 cut(s)	47
PmlI	CACGTG	1 cut(s)	47
Ppu21I	YACGTR	1 cut(s)	47
Psp1406I	AACGTT	1 cut(s)	130
PspCI	CACGTG	1 cut(s)	47
PspN4I	GGNNCC	1 cut(s)	6
PstI	CTGCAG	1 cut(s)	127
PsuI	RGATCY	2 cut(s)	4, 209
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	60
SaqAI	TTAA	2 cut(s)	39, 206
SatI	GCNGC	2 cut(s)	111, 309
Sau3AI	GATC	2 cut(s)	4, 209
ScaI	AGTACT	1 cut(s)	203
SetI	ASST	5 cut(s)	49, 133, 187, 250, 307
SfcI	CTRYAG	1 cut(s)	123
SmiMI	CAYNNNNRTG	1 cut(s)	60
SmlI	CTYRAG	1 cut(s)	205
SmoI	CTYRAG	1 cut(s)	205
Sse9I	AATT	1 cut(s)	315
TaaI	ACNGT	2 cut(s)	143, 283
TaiI	ACGT	2 cut(s)	49, 133
TaqI	TCGA	1 cut(s)	179
TasI	AATT	1 cut(s)	315
TatI	WGTACW	1 cut(s)	201
Tru1I	TTAA	2 cut(s)	39, 206
Tru9I	TTAA	2 cut(s)	39, 206
TscAI	CASTG	1 cut(s)	165
TseFI	GTSAC	1 cut(s)	272
TseI	GCWGC	2 cut(s)	110, 308
Tsp45I	GTSAC	1 cut(s)	272
TspDTI	ATGAA	1 cut(s)	275
TspGWI	ACGGA	3 cut(s)	11, 135, 245
TspRI	CASTG	1 cut(s)	165
Vha464I	CTTAAG	1 cut(s)	205
ZrmI	AGTACT	1 cut(s)	203
Zsp2I	ATGCAT	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.