MD06G1018400.v1.1

Benzyl alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0000190
Physical Location & Seq
Reverse (-)
2245136 .. 2246535
1400 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1018400.v1.1.491

Sequence Viewer

Length: 306 bp
ATGTGTTACAAGAATAACCCTTCACTGAAAGAAAATCATGATCCCGTTAAGGTGATTAGGGAAGCCTTAAGTAGGGCACTAGTGTATTACTACCCTTTAGCTGGGAGGCTTAGGGAAGGGCCTAACATAAAGCTTAGGGTGACCCATCTTACATGTGGAGGTTTCATACTTGCATTGCGCCTAAACCACACAATGTGTGATGCACCTGGACTGCATCTGTTCCTGAACGCCATTGCGGAGATGGCAAGAGGCGAACATGCACCATCTATTCTACCAGTGTGGGAGAGAGAGCTCTTGTTCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

102

Amino Acids

11.47

Weight (kDa)

8.93

Isoelectric Point (pI)

38.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 2 - 40 9.1e-07 Transferase family
Transferase PF02458 41 - 99 3.1e-13 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000190)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03480 AT5G17540
fragaria_vesca FvH4_2g12510 FvH4_3g38880 FvH4_3g40890 FvH4_5g24240 FvH4_5g24250 FvH4_5g24270 FvH4_5g24273 FvH4_6g05391 FvH4_6g05392
malus_domestica MD00G1201900.v1.1 MD00G1202100.v1.1 MD02G1001400.v1.1 MD02G1013900.v1.1 MD02G1014800.v1.1 MD02G1015000.v1.1 MD02G1015200.v1.1 MD03G1080200.v1.1 MD06G1016200.v1.1 MD06G1016500.v1.1 MD06G1017700.v1.1 MD06G1018100.v1.1 MD06G1018200.v1.1 MD06G1018400.v1.1 MD06G1018700.v1.1 MD06G1018800.v1.1 MD06G1019000.v1.1 MD06G1019100.v1.1 MD06G1019300.v1.1 MD06G1019800.v1.1 MD06G1020400.v1.1 MD06G1020700.v1.1 MD06G1020800.v1.1 MD06G1020900.v1.1 MD12G1038300.v1.1 MD12G1039400.v1.1
prunus_persica Prupe.5G017800_v2.0.a1 Prupe.5G017900_v2.0.a1 Prupe.5G018000_v2.0.a1 Prupe.5G018100_v2.0.a1 Prupe.5G018200_v2.0.a1 Prupe.8G000100_v2.0.a1
pyrus_communis pycom02g01330 pycom02g01390 pycom03g06420 pycom06g01300 pycom06g01320 pycom06g01340 pycom06g01500 pycom06g01510 pycom06g01520 pycom12g03300 pycom12g03320
rosa_chinensis RchiOBHm_Chr5g0051841 RchiOBHm_Chr6g0272991 RchiOBHm_Chr7g0213951 RchiOBHm_Chr7g0214051 RchiOBHm_Chr7g0214131 RchiOBHm_Chr7g0214161 RchiOBHm_Chr7g0214231 RchiOBHm_Chr7g0214321 RchiOBHm_Chr7g0214351 RchiOBHm_Chr7g0214391 RchiOBHm_Chr7g0214451 RchiOBHm_Chr7g0222591
rosa_laevigata RLG00000002044 RLG00000002744 RLG00000002751 RLG00000002752 RLG00000002755 RLG00000002756 RLG00000002757 RLG00000002758 RLG00000002762 RLG00000002763 RLG00000013652
rosa_multiflora Rmu_sc0000328.1_g000008 Rmu_sc0003764.1_g000001 Rmu_sc0003764.1_g000002 Rmu_sc0004199.1_g000004 Rmu_sc0004199.1_g000006 Rmu_sc0004199.1_g000014 Rmu_sc0004199.1_g000019 Rmu_sc0004199.1_g000022 Rmu_sc0005063.1_g000018 Rmu_sc0006422.1_g000030 Rmu_sc0006422.1_g000031 Rmu_sc0009579.1_g000011 Rmu_sc0009579.1_g000017 Rmu_sc0016182.1_g000005 Rmu_sc0016182.1_g000007 Rmu_sc0016279.1_g000002 Rmu_ssc0000387.1_g000031
rosa_roxburghii Rroxscaffold_1G00027390 Rroxscaffold_2G00146810 Rroxscaffold_3G00236600 Rroxscaffold_3G00236620 Rroxscaffold_3G00245350 Rroxscaffold_3G00245400 Rroxscaffold_3G00245440 Rroxscaffold_3G00245480 Rroxscaffold_3G00245560 Rroxscaffold_7G00195770
rosa_rugosa Rorug02G0047800 Rorug02G0047900 Rorug05G0276800 Rorug06G0071900 Rorug07G0145400 Rorug07G0145500 Rorug07G0145600 Rorug07G0145700 Rorug07G0145700 Rorug07G0145800 Rorug07G0211200
rosa_samantha Rh5BG359700 Rh6AG187600 Rh6DG181500 Rh7AG278000 Rh7AG278900 Rh7AG279800 Rh7AG279900 Rh7AG280100 Rh7AG280400 Rh7AG280700 Rh7AG281200 Rh7AG354300 Rh7AG354800 Rh7BG272300 Rh7BG272500 Rh7BG272600 Rh7BG272700 Rh7BG272800 Rh7BG273000 Rh7BG343200 Rh7CG297000 Rh7CG297900 Rh7CG298100 Rh7CG298800 Rh7CG299100 Rh7CG299300 Rh7CG299400 Rh7CG300000 Rh7CG300200 Rh7CG300600 Rh7CG371800 Rh7CG371900
rosa_wichuraiana Rw5G032880 Rw6G016270 Rw7G023930 Rw7G023980 Rw7G023990 Rw7G024000 Rw7G024010 Rw7G024020 Rw7G024030 Rw7G029800 Rw7G030090 Rw7G030140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 236
AclWI GGATC 1 cut(s) 35
AdeI CACNNNGTG 1 cut(s) 195
AfiI CCNNNNNNNGG 2 cut(s) 72, 101
AflII CTTAAG 1 cut(s) 67
AflIII ACRYGT 1 cut(s) 152
AhlI ACTAGT 1 cut(s) 79
AjnI CCWGG 1 cut(s) 205
AluBI AGCT 3 cut(s) 101, 133, 292
AluI AGCT 3 cut(s) 101, 133, 292
Alw21I GWGCWC 1 cut(s) 294
AlwI GGATC 1 cut(s) 35
AoxI GGCC 1 cut(s) 119
AspLEI GCGC 1 cut(s) 180
AspS9I GGNCC 1 cut(s) 119
AsuHPI GGTGA 2 cut(s) 64, 151
BaeGI GKGCMC 1 cut(s) 79
BanII GRGCYC 1 cut(s) 294
Bbv12I GWGCWC 1 cut(s) 294
BccI CCATC 3 cut(s) 153, 235, 271
BciT130I CCWGG 1 cut(s) 207
BcuI ACTAGT 1 cut(s) 79
BfaI CTAG 1 cut(s) 80
BfrI CTTAAG 1 cut(s) 67
Bme1390I CCNGG 1 cut(s) 207
BmgT120I GGNCC 1 cut(s) 119
BmrFI CCNGG 1 cut(s) 207
BmsI GCATC 2 cut(s) 190, 223
Bpu10I CCTNAGC 2 cut(s) 110, 134
Bsc4I CCNNNNNNNGG 2 cut(s) 72, 101
Bse1I ACTGG 1 cut(s) 275
Bse3DI GCAATG 2 cut(s) 173, 231
BseBI CCWGG 1 cut(s) 207
BseLI CCNNNNNNNGG 2 cut(s) 72, 101
BseMI GCAATG 2 cut(s) 173, 231
BseNI ACTGG 1 cut(s) 275
BseSI GKGCMC 1 cut(s) 79
BseYI CCCAGC 1 cut(s) 101
BshFI GGCC 1 cut(s) 121
BsiHKAI GWGCWC 1 cut(s) 294
BslI CCNNNNNNNGG 2 cut(s) 72, 101
BsnI GGCC 1 cut(s) 121
Bsp1286I GDGCHC 2 cut(s) 79, 294
Bsp143I GATC 1 cut(s) 40
BspACI CCGC 1 cut(s) 236
BspANI GGCC 1 cut(s) 121
BspHI TCATGA 1 cut(s) 37
BspPI GGATC 1 cut(s) 35
BspTI CTTAAG 1 cut(s) 67
BsrDI GCAATG 2 cut(s) 173, 231
BsrI ACTGG 1 cut(s) 275
BssMI GATC 1 cut(s) 40
Bst2UI CCWGG 1 cut(s) 207
BstAFI CTTAAG 1 cut(s) 67
BstDEI CTNAG 2 cut(s) 110, 134
BstEII GGTNACC 1 cut(s) 139
BstENI CCTNNNNNAGG 1 cut(s) 70
BstHHI GCGC 1 cut(s) 180
BstKTI GATC 1 cut(s) 43
BstMBI GATC 1 cut(s) 40
BstMWI GCNNNNNNNGC 1 cut(s) 242
BstNI CCWGG 1 cut(s) 207
BstNSI RCATGY 2 cut(s) 156, 260
BstPI GGTNACC 1 cut(s) 139
BstSCI CCNGG 1 cut(s) 205
BstSLI GKGCMC 1 cut(s) 79
BsuRI GGCC 1 cut(s) 121
BtsIMutI CAGTG 2 cut(s) 23, 282
CciI TCATGA 1 cut(s) 37
CfoI GCGC 1 cut(s) 180
Cfr13I GGNCC 1 cut(s) 119
CviAII CATG 3 cut(s) 38, 153, 257
CviJI RGCY 6 cut(s) 65, 101, 109, 121, 133, 292
CviKI_1 RGCY 6 cut(s) 65, 101, 109, 121, 133, 292
DdeI CTNAG 2 cut(s) 110, 134
DpnI GATC 1 cut(s) 42
DpnII GATC 1 cut(s) 40
DraIII CACNNNGTG 1 cut(s) 195
Ecl136II GAGCTC 1 cut(s) 292
Eco24I GRGCYC 1 cut(s) 294
Eco53kI GAGCTC 1 cut(s) 292
Eco91I GGTNACC 1 cut(s) 139
EcoICRI GAGCTC 1 cut(s) 292
EcoNI CCTNNNNNAGG 1 cut(s) 70
EcoO109I RGGNCCY 1 cut(s) 119
EcoO65I GGTNACC 1 cut(s) 139
EcoRII CCWGG 1 cut(s) 205
EcoT38I GRGCYC 1 cut(s) 294
FaeI CATG 3 cut(s) 41, 156, 260
FaiI YATR 5 cut(s) 39, 128, 154, 167, 258
FatI CATG 3 cut(s) 37, 152, 256
FriOI GRGCYC 1 cut(s) 294
FspBI CTAG 1 cut(s) 80
GlaI GCGC 1 cut(s) 179
GsaI CCCAGC 1 cut(s) 105
HaeIII GGCC 1 cut(s) 121
HhaI GCGC 1 cut(s) 180
Hin1II CATG 3 cut(s) 41, 156, 260
Hin6I GCGC 1 cut(s) 178
HinP1I GCGC 1 cut(s) 178
HindIII AAGCTT 1 cut(s) 131
HphI GGTGA 2 cut(s) 64, 151
Hpy166II GTNNAC 1 cut(s) 300
Hpy188III TCNNGA 2 cut(s) 38, 223
Hpy8I GTNNAC 1 cut(s) 300
HpyAV CCTTC 2 cut(s) 30, 110
HpyCH4V TGCA 4 cut(s) 173, 203, 214, 260
HpyF10VI GCNNNNNNNGC 1 cut(s) 242
HpyF3I CTNAG 2 cut(s) 110, 134
Hsp92II CATG 3 cut(s) 41, 156, 260
HspAI GCGC 1 cut(s) 178
Kzo9I GATC 1 cut(s) 40
LpnPI CCDG 5 cut(s) 87, 192, 219, 236, 288
LweI GCATC 2 cut(s) 190, 223
MaeI CTAG 1 cut(s) 80
MaeIII GTNAC 2 cut(s) 5, 139
MalI GATC 1 cut(s) 42
MboI GATC 1 cut(s) 40
MhlI GDGCHC 2 cut(s) 79, 294
MnlI CCTC 3 cut(s) 99, 152, 242
MseI TTAA 2 cut(s) 48, 68
MspCI CTTAAG 1 cut(s) 67
MspR9I CCNGG 1 cut(s) 207
MvaI CCWGG 1 cut(s) 207
MwoI GCNNNNNNNGC 1 cut(s) 242
NdeII GATC 1 cut(s) 40
NlaIII CATG 3 cut(s) 41, 156, 260
NmuCI GTSAC 1 cut(s) 139
NspI RCATGY 2 cut(s) 156, 260
PagI TCATGA 1 cut(s) 37
PciI ACATGT 1 cut(s) 152
PscI ACATGT 1 cut(s) 152
Psp124BI GAGCTC 1 cut(s) 294
Psp6I CCWGG 1 cut(s) 205
PspEI GGTNACC 1 cut(s) 139
PspFI CCCAGC 1 cut(s) 101
PspGI CCWGG 1 cut(s) 205
PspPI GGNCC 1 cut(s) 119
SacI GAGCTC 1 cut(s) 294
SaqAI TTAA 2 cut(s) 48, 68
Sau3AI GATC 1 cut(s) 40
Sau96I GGNCC 1 cut(s) 119
ScrFI CCNGG 1 cut(s) 207
SduI GDGCHC 2 cut(s) 79, 294
SetI ASST 6 cut(s) 54, 103, 135, 163, 208, 294
SfaNI GCATC 2 cut(s) 190, 223
SmlI CTYRAG 1 cut(s) 67
SmoI CTYRAG 1 cut(s) 67
SpeI ACTAGT 1 cut(s) 79
SsiI CCGC 1 cut(s) 236
SspMI CTAG 1 cut(s) 80
SstI GAGCTC 1 cut(s) 294
StyD4I CCNGG 1 cut(s) 205
Tru1I TTAA 2 cut(s) 48, 68
Tru9I TTAA 2 cut(s) 48, 68
TscAI CASTG 2 cut(s) 30, 282
TseFI GTSAC 1 cut(s) 139
Tsp45I GTSAC 1 cut(s) 139
TspDTI ATGAA 1 cut(s) 154
TspRI CASTG 2 cut(s) 30, 282
Vha464I CTTAAG 1 cut(s) 67
XagI CCTNNNNNAGG 1 cut(s) 70
XceI RCATGY 2 cut(s) 156, 260
XcmI CCANNNNNNNNNTGG 2 cut(s) 152, 238
XspI CTAG 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.