Prupe.8G000100_v2.0.a1

Benzyl alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000190
Physical Location & Seq
Reverse (-)
9930 .. 11684
1755 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G000100.1

Sequence Viewer

Length: 885 bp
ATGAGCGATGCAGCAGGACTAGTCCAATTCATGATGGCCGTGGGAGAGATGGCACGTGGCGCACGTGTCCCCTCCATCCAGCCTGTGTGGAAAAGGGAGCTACTGAAAGCTCGTGATCCACCGCGCGTGACCTGTACGCACCACGAGTACGATGAAGTGGCGGACACCAAGGGCACCATCATCCCACTTGATGATATGGCCCACCGCTCCTTTTTCTTCAGGCCCATCGAGATGTCCGCCATCCGTAGATTCGTTCCACAGCACCTACGCAAGTGCTCCACGTTTGAGGTCCTCACGGCTTGCCTCTGGCGTTGCCGTACCATAGCACTTCAGCCAGACCCCGAGGAGGAGGTGCGCGTGCTGTGCATTGTGAATGCCCGTGCCAAATTCAACCCTGCTCTGCCCGTGGGTTATTATGGCAACGCGTTTGCGTTCCCGGTGGCTCTCACGACGGCTGGCAGGCTTTGCCAGAACCCGCTGGGCTACGCGCTGGAGCTGGTAAAGCAGGCCAAAGCTGATGTGACAGAGGAGTACATGCGCTCTTTGGCAGATCTCATGGTCAACAGGGGCCGGCCACACTTCACGGTGGTGGGGACGTACCTTGTGTCGGATGTGACGCGTGCTGGGTTTGGAGAGGTGGACTTCGGGTGGGGCAAAGCAGCGTATGGCGGGCCAGCCAAGGGTGGGGTCGGGGCCATACCTGGAGTGGCTAGCTTCTACATTCCATTCAAAGACCATAATGGGCAAGATGGGATTGTGGTTCCTATTTGTTTACCGGCCCCAGCTATGGAGAGATTCATCAAGGAACTAGATACCATGTTGAATGCTAATGACCAACCAAATAGGGTTCAGAAGTCTACTACCTTTATCACATCTGCCCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

295

Amino Acids

32.45

Weight (kDa)

8.44

Isoelectric Point (pI)

42.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000190)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03480 AT5G17540
fragaria_vesca FvH4_2g12510 FvH4_3g38880 FvH4_3g40890 FvH4_5g24240 FvH4_5g24250 FvH4_5g24270 FvH4_5g24273 FvH4_6g05391 FvH4_6g05392
malus_domestica MD00G1201900.v1.1 MD00G1202100.v1.1 MD02G1001400.v1.1 MD02G1013900.v1.1 MD02G1014800.v1.1 MD02G1015000.v1.1 MD02G1015200.v1.1 MD03G1080200.v1.1 MD06G1016200.v1.1 MD06G1016500.v1.1 MD06G1017700.v1.1 MD06G1018100.v1.1 MD06G1018200.v1.1 MD06G1018400.v1.1 MD06G1018700.v1.1 MD06G1018800.v1.1 MD06G1019000.v1.1 MD06G1019100.v1.1 MD06G1019300.v1.1 MD06G1019800.v1.1 MD06G1020400.v1.1 MD06G1020700.v1.1 MD06G1020800.v1.1 MD06G1020900.v1.1 MD12G1038300.v1.1 MD12G1039400.v1.1
prunus_persica Prupe.5G017800_v2.0.a1 Prupe.5G017900_v2.0.a1 Prupe.5G018000_v2.0.a1 Prupe.5G018100_v2.0.a1 Prupe.5G018200_v2.0.a1 Prupe.8G000100_v2.0.a1
pyrus_communis pycom02g01330 pycom02g01390 pycom03g06420 pycom06g01300 pycom06g01320 pycom06g01340 pycom06g01500 pycom06g01510 pycom06g01520 pycom12g03300 pycom12g03320
rosa_chinensis RchiOBHm_Chr5g0051841 RchiOBHm_Chr6g0272991 RchiOBHm_Chr7g0213951 RchiOBHm_Chr7g0214051 RchiOBHm_Chr7g0214131 RchiOBHm_Chr7g0214161 RchiOBHm_Chr7g0214231 RchiOBHm_Chr7g0214321 RchiOBHm_Chr7g0214351 RchiOBHm_Chr7g0214391 RchiOBHm_Chr7g0214451 RchiOBHm_Chr7g0222591
rosa_laevigata RLG00000002044 RLG00000002744 RLG00000002751 RLG00000002752 RLG00000002755 RLG00000002756 RLG00000002757 RLG00000002758 RLG00000002762 RLG00000002763 RLG00000013652
rosa_multiflora Rmu_sc0000328.1_g000008 Rmu_sc0003764.1_g000001 Rmu_sc0003764.1_g000002 Rmu_sc0004199.1_g000004 Rmu_sc0004199.1_g000006 Rmu_sc0004199.1_g000014 Rmu_sc0004199.1_g000019 Rmu_sc0004199.1_g000022 Rmu_sc0005063.1_g000018 Rmu_sc0006422.1_g000030 Rmu_sc0006422.1_g000031 Rmu_sc0009579.1_g000011 Rmu_sc0009579.1_g000017 Rmu_sc0016182.1_g000005 Rmu_sc0016182.1_g000007 Rmu_sc0016279.1_g000002 Rmu_ssc0000387.1_g000031
rosa_roxburghii Rroxscaffold_1G00027390 Rroxscaffold_2G00146810 Rroxscaffold_3G00236600 Rroxscaffold_3G00236620 Rroxscaffold_3G00245350 Rroxscaffold_3G00245400 Rroxscaffold_3G00245440 Rroxscaffold_3G00245480 Rroxscaffold_3G00245560 Rroxscaffold_7G00195770
rosa_rugosa Rorug02G0047800 Rorug02G0047900 Rorug05G0276800 Rorug06G0071900 Rorug07G0145400 Rorug07G0145500 Rorug07G0145600 Rorug07G0145700 Rorug07G0145700 Rorug07G0145800 Rorug07G0211200
rosa_samantha Rh5BG359700 Rh6AG187600 Rh6DG181500 Rh7AG278000 Rh7AG278900 Rh7AG279800 Rh7AG279900 Rh7AG280100 Rh7AG280400 Rh7AG280700 Rh7AG281200 Rh7AG354300 Rh7AG354800 Rh7BG272300 Rh7BG272500 Rh7BG272600 Rh7BG272700 Rh7BG272800 Rh7BG273000 Rh7BG343200 Rh7CG297000 Rh7CG297900 Rh7CG298100 Rh7CG298800 Rh7CG299100 Rh7CG299300 Rh7CG299400 Rh7CG300000 Rh7CG300200 Rh7CG300600 Rh7CG371800 Rh7CG371900
rosa_wichuraiana Rw5G032880 Rw6G016270 Rw7G023930 Rw7G023980 Rw7G023990 Rw7G024000 Rw7G024010 Rw7G024020 Rw7G024030 Rw7G029800 Rw7G030090 Rw7G030140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 173
AccBSI CCGCTC 1 cut(s) 207
AccI GTMKAC 1 cut(s) 857
AccII CGCG 6 cut(s) 124, 126, 357, 425, 488, 619
AciI CCGC 6 cut(s) 122, 161, 205, 237, 476, 669
AclWI GGATC 1 cut(s) 110
AcoI YGGCCR 2 cut(s) 36, 572
AcsI RAATTY 1 cut(s) 386
AcuI CTGAAG 2 cut(s) 202, 314
AcvI CACGTG 2 cut(s) 56, 65
AfaI GTAC 5 cut(s) 136, 149, 319, 533, 599
AfiI CCNNNNNNNGG 5 cut(s) 346, 607, 680, 684, 787
AflIII ACRYGT 3 cut(s) 64, 423, 617
AgsI TTSAA 3 cut(s) 391, 730, 823
AhlI ACTAGT 1 cut(s) 19
AjnI CCWGG 1 cut(s) 700
AleI CACNNNNGTG 1 cut(s) 587
AluBI AGCT 6 cut(s) 100, 110, 496, 515, 714, 785
AluI AGCT 6 cut(s) 100, 110, 496, 515, 714, 785
Alw21I GWGCWC 1 cut(s) 278
AlwI GGATC 1 cut(s) 110
Ama87I CYCGRG 1 cut(s) 341
AoxI GGCC 9 cut(s) 36, 198, 221, 507, 568, 572, 671, 693, 777
ApeKI GCWGC 2 cut(s) 11, 659
ApoI RAATTY 1 cut(s) 386
AspLEI GCGC 5 cut(s) 62, 126, 357, 490, 540
AspS9I GGNCC 7 cut(s) 199, 222, 289, 568, 671, 693, 778
AsuC2I CCSGG 1 cut(s) 437
AsuNHI GCTAGC 1 cut(s) 710
AvaI CYCGRG 1 cut(s) 341
AvaII GGWCC 1 cut(s) 289
BaeGI GKGCMC 1 cut(s) 176
BanI GGYRCC 1 cut(s) 173
BauI CACGAG 2 cut(s) 111, 143
BbrPI CACGTG 2 cut(s) 56, 65
Bbv12I GWGCWC 1 cut(s) 278
BbvI GCAGC 2 cut(s) 23, 671
BccI CCATC 7 cut(s) 28, 43, 83, 185, 233, 248, 743
BceAI ACGGC 4 cut(s) 23, 300, 312, 468
BciT130I CCWGG 1 cut(s) 702
BcnI CCSGG 1 cut(s) 437
BcuI ACTAGT 1 cut(s) 19
BfaI CTAG 3 cut(s) 20, 711, 809
BglII AGATCT 1 cut(s) 550
BisI GCNGC 2 cut(s) 12, 660
BlsI GCNGC 2 cut(s) 13, 661
Bme1390I CCNGG 2 cut(s) 437, 702
Bme18I GGWCC 1 cut(s) 289
BmeT110I CYCGRG 1 cut(s) 341
BmgT120I GGNCC 7 cut(s) 199, 222, 289, 568, 671, 693, 778
BmiI GGNNCC 5 cut(s) 175, 569, 694, 762, 780
BmrFI CCNGG 2 cut(s) 437, 702
BmtI GCTAGC 1 cut(s) 714
BpmI CTGGAG 2 cut(s) 512, 723
BpuMI CCSGG 1 cut(s) 437
BsaAI YACGTR 2 cut(s) 56, 65
BsaJI CCNNGG 5 cut(s) 39, 168, 342, 405, 678
Bsc4I CCNNNNNNNGG 5 cut(s) 346, 607, 680, 684, 787
Bse118I RCCGGY 2 cut(s) 570, 775
BseBI CCWGG 1 cut(s) 702
BseDI CCNNGG 5 cut(s) 39, 168, 342, 405, 678
BseGI GGATG 4 cut(s) 75, 180, 240, 616
BseLI CCNNNNNNNGG 5 cut(s) 346, 607, 680, 684, 787
BseRI GAGGAG 3 cut(s) 359, 362, 542
BseSI GKGCMC 1 cut(s) 176
BseXI GCAGC 2 cut(s) 23, 671
BseYI CCCAGC 3 cut(s) 478, 623, 781
Bsh1236I CGCG 6 cut(s) 124, 126, 357, 425, 488, 619
BshFI GGCC 9 cut(s) 38, 200, 223, 509, 570, 574, 673, 695, 779
BshNI GGYRCC 1 cut(s) 173
BsiHKAI GWGCWC 1 cut(s) 278
BsiHKCI CYCGRG 1 cut(s) 341
BsiSI CCGG 3 cut(s) 437, 571, 776
BslFI GGGAC 2 cut(s) 53, 607
BslI CCNNNNNNNGG 5 cut(s) 346, 607, 680, 684, 787
BsmFI GGGAC 2 cut(s) 53, 607
BsmI GAATGC 2 cut(s) 379, 829
BsnI GGCC 9 cut(s) 38, 200, 223, 509, 570, 574, 673, 695, 779
BsoBI CYCGRG 1 cut(s) 341
Bsp1286I GDGCHC 2 cut(s) 176, 278
Bsp143I GATC 2 cut(s) 115, 550
BspACI CCGC 6 cut(s) 122, 161, 205, 237, 476, 669
BspANI GGCC 9 cut(s) 38, 200, 223, 509, 570, 574, 673, 695, 779
BspFNI CGCG 6 cut(s) 124, 126, 357, 425, 488, 619
BspHI TCATGA 1 cut(s) 30
BspLI GGNNCC 5 cut(s) 175, 569, 694, 762, 780
BspOI GCTAGC 1 cut(s) 714
BspPI GGATC 1 cut(s) 110
BspT107I GGYRCC 1 cut(s) 173
BsrBI CCGCTC 1 cut(s) 207
BsrFI RCCGGY 2 cut(s) 570, 775
BssAI RCCGGY 2 cut(s) 570, 775
BssECI CCNNGG 5 cut(s) 39, 168, 342, 405, 678
BssMI GATC 2 cut(s) 115, 550
BssSI CACGAG 2 cut(s) 111, 143
BssT1I CCWWGG 2 cut(s) 168, 678
Bst2BI CACGAG 2 cut(s) 111, 143
Bst2UI CCWGG 1 cut(s) 702
Bst4CI ACNGT 1 cut(s) 586
BstAPI GCANNNNNTGC 1 cut(s) 465
BstBAI YACGTR 2 cut(s) 56, 65
BstDSI CCRYGG 2 cut(s) 39, 405
BstF5I GGATG 4 cut(s) 75, 180, 240, 616
BstFNI CGCG 6 cut(s) 124, 126, 357, 425, 488, 619
BstHHI GCGC 5 cut(s) 62, 126, 357, 490, 540
BstKTI GATC 2 cut(s) 118, 553
BstMBI GATC 2 cut(s) 115, 550
BstMWI GCNNNNNNNGC 4 cut(s) 59, 363, 465, 502
BstNI CCWGG 1 cut(s) 702
BstNSI RCATGY 1 cut(s) 538
BstSCI CCNGG 2 cut(s) 435, 700
BstSLI GKGCMC 1 cut(s) 176
BstUI CGCG 6 cut(s) 124, 126, 357, 425, 488, 619
BstV1I GCAGC 2 cut(s) 23, 671
BstX2I RGATCY 1 cut(s) 550
BstYI RGATCY 1 cut(s) 550
BsuRI GGCC 9 cut(s) 38, 200, 223, 509, 570, 574, 673, 695, 779
BtgI CCRYGG 2 cut(s) 39, 405
BtgZI GCGATG 1 cut(s) 21
BtsCI GGATG 4 cut(s) 75, 180, 240, 616
CciI TCATGA 1 cut(s) 30
CfoI GCGC 5 cut(s) 62, 126, 357, 490, 540
Cfr10I RCCGGY 2 cut(s) 570, 775
Cfr13I GGNCC 7 cut(s) 199, 222, 289, 568, 671, 693, 778
CseI GACGC 1 cut(s) 625
Csp6I GTAC 5 cut(s) 135, 148, 318, 532, 598
CviAII CATG 4 cut(s) 31, 535, 556, 817
CviQI GTAC 5 cut(s) 135, 148, 318, 532, 598
DpnI GATC 2 cut(s) 117, 552
DpnII GATC 2 cut(s) 115, 550
EaeI YGGCCR 2 cut(s) 36, 572
EciI GGCGGA 2 cut(s) 176, 226
Eco130I CCWWGG 2 cut(s) 168, 678
Eco47I GGWCC 1 cut(s) 289
Eco57I CTGAAG 2 cut(s) 202, 314
Eco72I CACGTG 2 cut(s) 56, 65
Eco88I CYCGRG 1 cut(s) 341
EcoO109I RGGNCCY 1 cut(s) 289
EcoRII CCWGG 1 cut(s) 700
EcoT14I CCWWGG 2 cut(s) 168, 678
ErhI CCWWGG 2 cut(s) 168, 678
FaeI CATG 4 cut(s) 34, 538, 559, 820
FaqI GGGAC 2 cut(s) 53, 607
FatI CATG 4 cut(s) 30, 534, 555, 816
FauI CCCGC 2 cut(s) 483, 662
FblI GTMKAC 1 cut(s) 857
Fnu4HI GCNGC 2 cut(s) 12, 660
FokI GGATG 4 cut(s) 62, 167, 227, 623
FseI GGCCGGCC 1 cut(s) 574
Fsp4HI GCNGC 2 cut(s) 12, 660
FspBI CTAG 3 cut(s) 20, 711, 809
GlaI GCGC 5 cut(s) 61, 125, 356, 489, 539
GluI GCNGC 2 cut(s) 12, 660
GsaI CCCAGC 3 cut(s) 482, 627, 785
GsuI CTGGAG 2 cut(s) 512, 723
HaeIII GGCC 9 cut(s) 38, 200, 223, 509, 570, 574, 673, 695, 779
HapII CCGG 3 cut(s) 437, 571, 776
HgaI GACGC 1 cut(s) 625
HhaI GCGC 5 cut(s) 62, 126, 357, 490, 540
Hin1II CATG 4 cut(s) 34, 538, 559, 820
Hin6I GCGC 5 cut(s) 60, 124, 355, 488, 538
HinP1I GCGC 5 cut(s) 60, 124, 355, 488, 538
HincII GTYRAC 1 cut(s) 562
HindII GTYRAC 1 cut(s) 562
HinfI GANTC 2 cut(s) 249, 795
HpaII CCGG 3 cut(s) 437, 571, 776
Hpy166II GTNNAC 4 cut(s) 562, 640, 773, 858
Hpy188I TCNGA 2 cut(s) 610, 852
Hpy188III TCNNGA 4 cut(s) 31, 113, 229, 448
Hpy8I GTNNAC 4 cut(s) 562, 640, 773, 858
Hpy99I CGWCG 1 cut(s) 454
HpyCH4III ACNGT 1 cut(s) 586
HpyCH4IV ACGT 4 cut(s) 55, 64, 281, 596
HpyCH4V TGCA 2 cut(s) 11, 366
HpyF10VI GCNNNNNNNGC 4 cut(s) 59, 363, 465, 502
HpySE526I ACGT 4 cut(s) 55, 64, 281, 596
Hsp92II CATG 4 cut(s) 34, 538, 559, 820
HspAI GCGC 5 cut(s) 60, 124, 355, 488, 538
KroI GCCGGC 1 cut(s) 570
KroNI GCCGGC 1 cut(s) 572
Kzo9I GATC 2 cut(s) 115, 550
LmnI GCTCC 4 cut(s) 97, 212, 281, 493
Lsp1109I GCAGC 2 cut(s) 23, 671
MaeI CTAG 3 cut(s) 20, 711, 809
MaeII ACGT 4 cut(s) 55, 64, 281, 596
MaeIII GTNAC 3 cut(s) 127, 520, 613
MalI GATC 2 cut(s) 117, 552
MbiI CCGCTC 1 cut(s) 207
MboI GATC 2 cut(s) 115, 550
MboII GAAGA 1 cut(s) 208
MflI RGATCY 1 cut(s) 550
MhlI GDGCHC 2 cut(s) 176, 278
MluCI AATT 2 cut(s) 26, 386
MluI ACGCGT 2 cut(s) 423, 617
MmeI TCCRAC 1 cut(s) 588
MnlI CCTC 9 cut(s) 82, 280, 302, 314, 337, 340, 343, 520, 628
MroNI GCCGGC 1 cut(s) 570
MslI CAYNNNNRTG 2 cut(s) 230, 587
MspA1I CMGCKG 1 cut(s) 478
MspI CCGG 3 cut(s) 437, 571, 776
MspR9I CCNGG 2 cut(s) 437, 702
Mva1269I GAATGC 2 cut(s) 379, 829
MvaI CCWGG 1 cut(s) 702
MvnI CGCG 6 cut(s) 124, 126, 357, 425, 488, 619
MwoI GCNNNNNNNGC 4 cut(s) 59, 363, 465, 502
NaeI GCCGGC 1 cut(s) 572
NciI CCSGG 1 cut(s) 437
NdeII GATC 2 cut(s) 115, 550
NgoMIV GCCGGC 1 cut(s) 570
NheI GCTAGC 1 cut(s) 710
NlaIII CATG 4 cut(s) 34, 538, 559, 820
NlaIV GGNNCC 5 cut(s) 175, 569, 694, 762, 780
NmuCI GTSAC 3 cut(s) 127, 520, 613
NspI RCATGY 1 cut(s) 538
OliI CACNNNNGTG 1 cut(s) 587
PagI TCATGA 1 cut(s) 30
PcsI WCGNNNNNNNCGW 1 cut(s) 61
PctI GAATGC 2 cut(s) 379, 829
PdiI GCCGGC 1 cut(s) 572
PfeI GAWTC 2 cut(s) 249, 795
PkrI GCNGC 2 cut(s) 13, 661
PmaCI CACGTG 2 cut(s) 56, 65
PmlI CACGTG 2 cut(s) 56, 65
Ppu21I YACGTR 2 cut(s) 56, 65
PpuMI RGGWCCY 1 cut(s) 289
Psp5II RGGWCCY 1 cut(s) 289
Psp6I CCWGG 1 cut(s) 700
PspCI CACGTG 2 cut(s) 56, 65
PspFI CCCAGC 3 cut(s) 478, 623, 781
PspGI CCWGG 1 cut(s) 700
PspN4I GGNNCC 5 cut(s) 175, 569, 694, 762, 780
PspPI GGNCC 7 cut(s) 199, 222, 289, 568, 671, 693, 778
PspPPI RGGWCCY 1 cut(s) 289
PsuI RGATCY 1 cut(s) 550
RigI GGCCGGCC 1 cut(s) 574
RsaI GTAC 5 cut(s) 136, 149, 319, 533, 599
RsaNI GTAC 5 cut(s) 135, 148, 318, 532, 598
RseI CAYNNNNRTG 2 cut(s) 230, 587
SatI GCNGC 2 cut(s) 12, 660
Sau3AI GATC 2 cut(s) 115, 550
Sau96I GGNCC 7 cut(s) 199, 222, 289, 568, 671, 693, 778
ScrFI CCNGG 2 cut(s) 437, 702
SduI GDGCHC 2 cut(s) 176, 278
SinI GGWCC 1 cut(s) 289
SmiMI CAYNNNNRTG 2 cut(s) 230, 587
SpeI ACTAGT 1 cut(s) 19
Sse9I AATT 2 cut(s) 26, 386
SsiI CCGC 6 cut(s) 122, 161, 205, 237, 476, 669
SspMI CTAG 3 cut(s) 20, 711, 809
StyD4I CCNGG 2 cut(s) 435, 700
StyI CCWWGG 2 cut(s) 168, 678
TaaI ACNGT 1 cut(s) 586
TaiI ACGT 4 cut(s) 58, 67, 284, 599
TaqI TCGA 1 cut(s) 228
TasI AATT 2 cut(s) 26, 386
TatI WGTACW 1 cut(s) 531
TfiI GAWTC 2 cut(s) 249, 795
TseFI GTSAC 3 cut(s) 127, 520, 613
TseI GCWGC 2 cut(s) 11, 659
Tsp45I GTSAC 3 cut(s) 127, 520, 613
TspDTI ATGAA 3 cut(s) 19, 168, 787
TspGWI ACGGA 1 cut(s) 233
VpaK11BI GGWCC 1 cut(s) 289
XapI RAATTY 1 cut(s) 386
XceI RCATGY 1 cut(s) 538
XcmI CCANNNNNNNNNTGG 1 cut(s) 703
XmiI GTMKAC 1 cut(s) 857
XspI CTAG 3 cut(s) 20, 711, 809
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.