Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000190

Physical Location & Seq

Genomic Coordinates Forward (+)

42340327 .. 42350874

Gene Structure 10548 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G030090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGTGACCGATCGTGTTACACGATCGGATTTAGGGCTCAAGGTAGTAGACTTGGCTTCTGCTAGACTGAGATGGTTTGCCGGTGTGAAGGATCCGATTTGGGATTGGTATACTAAGGTGTTTGTGCACGAAAGTGGATATGCTCCTCCTTGGTGTCTTAATGCGTTGGTGTACACGACAATGGCAGGCTGTTTTAGTGACGATTTGCTGACATGTGGTCTAACGGCAGAATGTTTATGTAACAGTCCGTTGGGATATGCAGTGGAGTTGGTGAAAAAATCGAAAGCTAAAATGAGTGAAGAGTACTTAAGATCTGTGGCAGATTTTACGGAGATAAGAGGACGACCTCCACTTGCAATGAAAGGCATTAGTGACTTTACAGTTTCGGATAACACAAGAACAGTTGCAGCAGAAATTGATTTCGGGTGGGGAAAGCCAATATATGCTGGAGTTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006631 GO:0006690 GO:0008150 GO:0008152 GO:0008374 GO:0009987 GO:0010327 GO:0010597 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0019372 GO:0019752 GO:0032787 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0071704 GO:1901568

KEGG Pathways

Metabolic & Signaling

ko00592 ko01110 map00592 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

152

Amino Acids

16.8

Weight (kDa)

5.82

Isoelectric Point (pI)

41.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	75 - 150	5.9e-08	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03480 AT5G17540
fragaria_vesca	FvH4_2g12510 FvH4_3g38880 FvH4_3g40890 FvH4_5g24240 FvH4_5g24250 FvH4_5g24270 FvH4_5g24273 FvH4_6g05391 FvH4_6g05392
malus_domestica	MD00G1201900.v1.1 MD00G1202100.v1.1 MD02G1001400.v1.1 MD02G1013900.v1.1 MD02G1014800.v1.1 MD02G1015000.v1.1 MD02G1015200.v1.1 MD03G1080200.v1.1 MD06G1016200.v1.1 MD06G1016500.v1.1 MD06G1017700.v1.1 MD06G1018100.v1.1 MD06G1018200.v1.1 MD06G1018400.v1.1 MD06G1018700.v1.1 MD06G1018800.v1.1 MD06G1019000.v1.1 MD06G1019100.v1.1 MD06G1019300.v1.1 MD06G1019800.v1.1 MD06G1020400.v1.1 MD06G1020700.v1.1 MD06G1020800.v1.1 MD06G1020900.v1.1 MD12G1038300.v1.1 MD12G1039400.v1.1
prunus_persica	Prupe.5G017800_v2.0.a1 Prupe.5G017900_v2.0.a1 Prupe.5G018000_v2.0.a1 Prupe.5G018100_v2.0.a1 Prupe.5G018200_v2.0.a1 Prupe.8G000100_v2.0.a1
pyrus_communis	pycom02g01330 pycom02g01390 pycom03g06420 pycom06g01300 pycom06g01320 pycom06g01340 pycom06g01500 pycom06g01510 pycom06g01520 pycom12g03300 pycom12g03320
rosa_chinensis	RchiOBHm_Chr5g0051841 RchiOBHm_Chr6g0272991 RchiOBHm_Chr7g0213951 RchiOBHm_Chr7g0214051 RchiOBHm_Chr7g0214131 RchiOBHm_Chr7g0214161 RchiOBHm_Chr7g0214231 RchiOBHm_Chr7g0214321 RchiOBHm_Chr7g0214351 RchiOBHm_Chr7g0214391 RchiOBHm_Chr7g0214451 RchiOBHm_Chr7g0222591
rosa_laevigata	RLG00000002044 RLG00000002744 RLG00000002751 RLG00000002752 RLG00000002755 RLG00000002756 RLG00000002757 RLG00000002758 RLG00000002762 RLG00000002763 RLG00000013652
rosa_multiflora	Rmu_sc0000328.1_g000008 Rmu_sc0003764.1_g000001 Rmu_sc0003764.1_g000002 Rmu_sc0004199.1_g000004 Rmu_sc0004199.1_g000006 Rmu_sc0004199.1_g000014 Rmu_sc0004199.1_g000019 Rmu_sc0004199.1_g000022 Rmu_sc0005063.1_g000018 Rmu_sc0006422.1_g000030 Rmu_sc0006422.1_g000031 Rmu_sc0009579.1_g000011 Rmu_sc0009579.1_g000017 Rmu_sc0016182.1_g000005 Rmu_sc0016182.1_g000007 Rmu_sc0016279.1_g000002 Rmu_ssc0000387.1_g000031
rosa_roxburghii	Rroxscaffold_1G00027390 Rroxscaffold_2G00146810 Rroxscaffold_3G00236600 Rroxscaffold_3G00236620 Rroxscaffold_3G00245350 Rroxscaffold_3G00245400 Rroxscaffold_3G00245440 Rroxscaffold_3G00245480 Rroxscaffold_3G00245560 Rroxscaffold_7G00195770
rosa_rugosa	Rorug02G0047800 Rorug02G0047900 Rorug05G0276800 Rorug06G0071900 Rorug07G0145400 Rorug07G0145500 Rorug07G0145600 Rorug07G0145700 Rorug07G0145700 Rorug07G0145800 Rorug07G0211200
rosa_samantha	Rh5BG359700 Rh6AG187600 Rh6DG181500 Rh7AG278000 Rh7AG278900 Rh7AG279800 Rh7AG279900 Rh7AG280100 Rh7AG280400 Rh7AG280700 Rh7AG281200 Rh7AG354300 Rh7AG354800 Rh7BG272300 Rh7BG272500 Rh7BG272600 Rh7BG272700 Rh7BG272800 Rh7BG273000 Rh7BG343200 Rh7CG297000 Rh7CG297900 Rh7CG298100 Rh7CG298800 Rh7CG299100 Rh7CG299300 Rh7CG299400 Rh7CG300000 Rh7CG300200 Rh7CG300600 Rh7CG371800 Rh7CG371900
rosa_wichuraiana	Rw5G032880 Rw6G016270 Rw7G023930 Rw7G023980 Rw7G023990 Rw7G024000 Rw7G024010 Rw7G024020 Rw7G024030 Rw7G029800 Rw7G030090 Rw7G030140

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	48, 110
AclWI	GGATC	2 cut(s)	86, 99
AfaI	GTAC	2 cut(s)	173, 305
AflII	CTTAAG	1 cut(s)	307
AflIII	ACRYGT	1 cut(s)	212
AhdI	GACNNNNNGTC	1 cut(s)	216
AleI	CACNNNNGTG	1 cut(s)	132
AluBI	AGCT	1 cut(s)	287
AluI	AGCT	1 cut(s)	287
Alw21I	GWGCWC	1 cut(s)	129
Alw44I	GTGCAC	1 cut(s)	125
AlwI	GGATC	2 cut(s)	86, 99
ApaLI	GTGCAC	1 cut(s)	125
ApeKI	GCWGC	1 cut(s)	407
AsuHPI	GGTGA	2 cut(s)	16, 283
BaeGI	GKGCMC	1 cut(s)	129
BamHI	GGATCC	1 cut(s)	91
BanII	GRGCYC	1 cut(s)	39
Bbv12I	GWGCWC	1 cut(s)	129
BbvI	GCAGC	1 cut(s)	419
BccI	CCATC	1 cut(s)	66
BceAI	ACGGC	1 cut(s)	240
BfaI	CTAG	1 cut(s)	63
BfrI	CTTAAG	1 cut(s)	307
BglII	AGATCT	1 cut(s)	311
BisI	GCNGC	1 cut(s)	408
BlsI	GCNGC	1 cut(s)	409
BmcAI	AGTACT	1 cut(s)	305
BmeRI	GACNNNNNGTC	1 cut(s)	216
BmiI	GGNNCC	1 cut(s)	93
BpuEI	CTTGAG	1 cut(s)	23
BsaJI	CCNNGG	1 cut(s)	149
Bse118I	RCCGGY	1 cut(s)	80
Bse3DI	GCAATG	1 cut(s)	363
BseDI	CCNNGG	1 cut(s)	149
BseMI	GCAATG	1 cut(s)	363
BseMII	CTCAG	1 cut(s)	59
BseRI	GAGGAG	1 cut(s)	135
BseSI	GKGCMC	1 cut(s)	129
BseXI	GCAGC	1 cut(s)	419
Bsh1285I	CGRYCG	2 cut(s)	13, 26
BsiEI	CGRYCG	2 cut(s)	13, 26
BsiHKAI	GWGCWC	1 cut(s)	129
BsiSI	CCGG	1 cut(s)	81
Bsp1286I	GDGCHC	2 cut(s)	39, 129
Bsp1407I	TGTACA	1 cut(s)	171
Bsp143I	GATC	4 cut(s)	10, 23, 91, 311
BspCNI	CTCAG	1 cut(s)	60
BspLI	GGNNCC	1 cut(s)	93
BspPI	GGATC	2 cut(s)	86, 99
BspTI	CTTAAG	1 cut(s)	307
BsrDI	GCAATG	1 cut(s)	363
BsrFI	RCCGGY	1 cut(s)	80
BsrGI	TGTACA	1 cut(s)	171
BssAI	RCCGGY	1 cut(s)	80
BssECI	CCNNGG	1 cut(s)	149
BssMI	GATC	4 cut(s)	10, 23, 91, 311
BssNAI	GTATAC	1 cut(s)	111
BssT1I	CCWWGG	1 cut(s)	149
Bst1107I	GTATAC	1 cut(s)	111
Bst4CI	ACNGT	3 cut(s)	245, 382, 403
Bst6I	CTCTTC	1 cut(s)	294
BstAFI	CTTAAG	1 cut(s)	307
BstAUI	TGTACA	1 cut(s)	171
BstC8I	GCNNGC	1 cut(s)	187
BstDEI	CTNAG	2 cut(s)	68, 114
BstEII	GGTNACC	1 cut(s)	4
BstKTI	GATC	4 cut(s)	13, 26, 94, 314
BstMBI	GATC	4 cut(s)	10, 23, 91, 311
BstMCI	CGRYCG	2 cut(s)	13, 26
BstMWI	GCNNNNNNNGC	1 cut(s)	452
BstNSI	RCATGY	1 cut(s)	216
BstPI	GGTNACC	1 cut(s)	4
BstSLI	GKGCMC	1 cut(s)	129
BstV1I	GCAGC	1 cut(s)	419
BstX2I	RGATCY	2 cut(s)	91, 311
BstYI	RGATCY	2 cut(s)	91, 311
BstZ17I	GTATAC	1 cut(s)	111
BtsI	GCAGTG	1 cut(s)	267
BtsIMutI	CAGTG	1 cut(s)	267
Cac8I	GCNNGC	1 cut(s)	187
Cfr10I	RCCGGY	1 cut(s)	80
Csp6I	GTAC	2 cut(s)	172, 304
CviAII	CATG	1 cut(s)	213
CviJI	RGCY	5 cut(s)	37, 56, 189, 287, 436
CviKI_1	RGCY	5 cut(s)	37, 56, 189, 287, 436
CviQI	GTAC	2 cut(s)	172, 304
DdeI	CTNAG	2 cut(s)	68, 114
DpnI	GATC	4 cut(s)	12, 25, 93, 313
DpnII	GATC	4 cut(s)	10, 23, 91, 311
DriI	GACNNNNNGTC	1 cut(s)	216
Eam1104I	CTCTTC	1 cut(s)	294
Eam1105I	GACNNNNNGTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	294
Eco130I	CCWWGG	1 cut(s)	149
Eco24I	GRGCYC	1 cut(s)	39
Eco91I	GGTNACC	1 cut(s)	4
EcoO65I	GGTNACC	1 cut(s)	4
EcoT14I	CCWWGG	1 cut(s)	149
EcoT38I	GRGCYC	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	149
FaeI	CATG	1 cut(s)	216
FaiI	YATR	7 cut(s)	111, 141, 214, 238, 258, 442, 444
FatI	CATG	1 cut(s)	212
FblI	GTMKAC	2 cut(s)	48, 110
Fnu4HI	GCNGC	1 cut(s)	408
FriOI	GRGCYC	1 cut(s)	39
Fsp4HI	GCNGC	1 cut(s)	408
FspBI	CTAG	1 cut(s)	63
GluI	GCNGC	1 cut(s)	408
HapII	CCGG	1 cut(s)	81
Hin1II	CATG	1 cut(s)	216
HpaII	CCGG	1 cut(s)	81
HphI	GGTGA	2 cut(s)	16, 283
Hpy166II	GTNNAC	5 cut(s)	49, 111, 127, 172, 174
Hpy188I	TCNGA	3 cut(s)	28, 96, 388
Hpy8I	GTNNAC	5 cut(s)	49, 111, 127, 172, 174
HpyAV	CCTTC	1 cut(s)	82
HpyCH4III	ACNGT	3 cut(s)	245, 382, 403
HpyCH4V	TGCA	4 cut(s)	127, 260, 356, 407
HpyF10VI	GCNNNNNNNGC	1 cut(s)	452
HpyF3I	CTNAG	2 cut(s)	68, 114
Hsp92II	CATG	1 cut(s)	216
Kzo9I	GATC	4 cut(s)	10, 23, 91, 311
LmnI	GCTCC	1 cut(s)	148
LpnPI	CCDG	3 cut(s)	94, 171, 432
Lsp1109I	GCAGC	1 cut(s)	419
MaeI	CTAG	1 cut(s)	63
MaeIII	GTNAC	5 cut(s)	4, 16, 197, 239, 371
MalI	GATC	4 cut(s)	12, 25, 93, 313
MboI	GATC	4 cut(s)	10, 23, 91, 311
MboII	GAAGA	1 cut(s)	311
MflI	RGATCY	2 cut(s)	91, 311
MhlI	GDGCHC	2 cut(s)	39, 129
MluCI	AATT	1 cut(s)	414
MnlI	CCTC	3 cut(s)	156, 332, 357
MseI	TTAA	2 cut(s)	159, 308
MslI	CAYNNNNRTG	2 cut(s)	132, 179
MspCI	CTTAAG	1 cut(s)	307
MspI	CCGG	1 cut(s)	81
MwoI	GCNNNNNNNGC	1 cut(s)	452
NdeII	GATC	4 cut(s)	10, 23, 91, 311
NlaIII	CATG	1 cut(s)	216
NlaIV	GGNNCC	1 cut(s)	93
NmuCI	GTSAC	3 cut(s)	4, 197, 371
NspI	RCATGY	1 cut(s)	216
OliI	CACNNNNGTG	1 cut(s)	132
PciI	ACATGT	1 cut(s)	212
PcsI	WCGNNNNNNNCGW	1 cut(s)	19
PkrI	GCNGC	1 cut(s)	409
Ple19I	CGATCG	2 cut(s)	13, 26
PscI	ACATGT	1 cut(s)	212
PspEI	GGTNACC	1 cut(s)	4
PspN4I	GGNNCC	1 cut(s)	93
PsuI	RGATCY	2 cut(s)	91, 311
PvuI	CGATCG	2 cut(s)	13, 26
RsaI	GTAC	2 cut(s)	173, 305
RsaNI	GTAC	2 cut(s)	172, 304
RseI	CAYNNNNRTG	2 cut(s)	132, 179
SaqAI	TTAA	2 cut(s)	159, 308
SatI	GCNGC	1 cut(s)	408
Sau3AI	GATC	4 cut(s)	10, 23, 91, 311
ScaI	AGTACT	1 cut(s)	305
SduI	GDGCHC	2 cut(s)	39, 129
SetI	ASST	4 cut(s)	45, 120, 289, 349
SmiMI	CAYNNNNRTG	2 cut(s)	132, 179
SmlI	CTYRAG	2 cut(s)	38, 307
SmoI	CTYRAG	2 cut(s)	38, 307
Sse9I	AATT	1 cut(s)	414
SspMI	CTAG	1 cut(s)	63
StyI	CCWWGG	1 cut(s)	149
TaaI	ACNGT	3 cut(s)	245, 382, 403
TaqI	TCGA	1 cut(s)	281
TaqII	GACCGA	1 cut(s)	23
TasI	AATT	1 cut(s)	414
TatI	WGTACW	2 cut(s)	171, 303
Tru1I	TTAA	2 cut(s)	159, 308
Tru9I	TTAA	2 cut(s)	159, 308
TscAI	CASTG	1 cut(s)	267
TseFI	GTSAC	3 cut(s)	4, 197, 371
TseI	GCWGC	1 cut(s)	407
Tsp45I	GTSAC	3 cut(s)	4, 197, 371
TspDTI	ATGAA	1 cut(s)	374
TspGWI	ACGGA	2 cut(s)	237, 344
TspRI	CASTG	1 cut(s)	267
Vha464I	CTTAAG	1 cut(s)	307
VneI	GTGCAC	1 cut(s)	125
XceI	RCATGY	1 cut(s)	216
XmiI	GTMKAC	2 cut(s)	48, 110
XspI	CTAG	1 cut(s)	63
ZrmI	AGTACT	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.