MD02G1001400.v1.1

Benzyl alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0000190
Physical Location & Seq
Reverse (-)
95351 .. 97441
2091 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1001400.v1.1.491

Sequence Viewer

Length: 960 bp
ATGATGTCATTCTCAGTACTTCAGGTGAAACGATTGCAACCGGAACTTATAACTCCGGCAAAGTCAACGCCTCAAGAAACAAAGTTTCTCTCAGATATTGACGACCAAGAAAGCTTGAGAGTTCAGATTCCAATCATAATGTGTTACAAAGACAACCCTTCACTTAATAAAAATCGTAATCCCGTTAAGGCAATTAGGGAAGCCTTAAGTAGAGCATTAGTGTATTACTACCCCTTAGCTGGAAGGCTTAGGGAAGGGCCTAATAGAAAGCTCGTGGTCGATTGCAATGGTGAAGGTATCTTGTTCGTTGAGGCTTCTGCTGATGTCACACTTGAGCAACTAGGAGACAAAATTCTACCCCCTTGTCCACTTTTAGAGGAGTTCTTATATAATTTTCCAGGCTCTGATGGAATTATTGATTGTCCTTTGCTGCTGATTCAGCATCCAGTACCAGTCAAACATGGTCAACGATCTTTCTACTTTGGTTGCAAGGAGATGAGAGTCCTTCGAAAACAGATTCCACCCCACCTAATTTCCACTTGCTCCACATTTGACTTGATCACAGCTTGTTTGTGGAAATGTCGCACTCTTGCACTTAACATTAATCCAAAAGAGGCTGTTCGAGTTTCATGCATTGTCAATGCACGAGGAAAGCACAACAATGTACGTCTTCCCTTGGGATACTATGGCAATGCATTTGCATTTCCAGCTGCAATTTCGAAGGCTGAACCTCTATGCAAAAATCCACTGGGATATGCTTTGGAGTTGGTGAAGAAGGCTAAAGCTACCATGAATGAAGAATACTTAAGATCAGTGGCAGATCTTTTGGTACTAAGAGGGCGACCTCAATATTCATCGACAGGAAGTTATTTAATAGTTTCTGATAATACGCGTGTAGGTTTTGGAGATGTCAATTTTGGATGGGGACAGCGTATTTGGACCCGTCAAGGCCTTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

320

Amino Acids

35.76

Weight (kDa)

9.17

Isoelectric Point (pI)

41.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 9 - 147 6.4e-28 Transferase family
Transferase PF02458 179 - 316 2.9e-20 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000190)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03480 AT5G17540
fragaria_vesca FvH4_2g12510 FvH4_3g38880 FvH4_3g40890 FvH4_5g24240 FvH4_5g24250 FvH4_5g24270 FvH4_5g24273 FvH4_6g05391 FvH4_6g05392
malus_domestica MD00G1201900.v1.1 MD00G1202100.v1.1 MD02G1001400.v1.1 MD02G1013900.v1.1 MD02G1014800.v1.1 MD02G1015000.v1.1 MD02G1015200.v1.1 MD03G1080200.v1.1 MD06G1016200.v1.1 MD06G1016500.v1.1 MD06G1017700.v1.1 MD06G1018100.v1.1 MD06G1018200.v1.1 MD06G1018400.v1.1 MD06G1018700.v1.1 MD06G1018800.v1.1 MD06G1019000.v1.1 MD06G1019100.v1.1 MD06G1019300.v1.1 MD06G1019800.v1.1 MD06G1020400.v1.1 MD06G1020700.v1.1 MD06G1020800.v1.1 MD06G1020900.v1.1 MD12G1038300.v1.1 MD12G1039400.v1.1
prunus_persica Prupe.5G017800_v2.0.a1 Prupe.5G017900_v2.0.a1 Prupe.5G018000_v2.0.a1 Prupe.5G018100_v2.0.a1 Prupe.5G018200_v2.0.a1 Prupe.8G000100_v2.0.a1
pyrus_communis pycom02g01330 pycom02g01390 pycom03g06420 pycom06g01300 pycom06g01320 pycom06g01340 pycom06g01500 pycom06g01510 pycom06g01520 pycom12g03300 pycom12g03320
rosa_chinensis RchiOBHm_Chr5g0051841 RchiOBHm_Chr6g0272991 RchiOBHm_Chr7g0213951 RchiOBHm_Chr7g0214051 RchiOBHm_Chr7g0214131 RchiOBHm_Chr7g0214161 RchiOBHm_Chr7g0214231 RchiOBHm_Chr7g0214321 RchiOBHm_Chr7g0214351 RchiOBHm_Chr7g0214391 RchiOBHm_Chr7g0214451 RchiOBHm_Chr7g0222591
rosa_laevigata RLG00000002044 RLG00000002744 RLG00000002751 RLG00000002752 RLG00000002755 RLG00000002756 RLG00000002757 RLG00000002758 RLG00000002762 RLG00000002763 RLG00000013652
rosa_multiflora Rmu_sc0000328.1_g000008 Rmu_sc0003764.1_g000001 Rmu_sc0003764.1_g000002 Rmu_sc0004199.1_g000004 Rmu_sc0004199.1_g000006 Rmu_sc0004199.1_g000014 Rmu_sc0004199.1_g000019 Rmu_sc0004199.1_g000022 Rmu_sc0005063.1_g000018 Rmu_sc0006422.1_g000030 Rmu_sc0006422.1_g000031 Rmu_sc0009579.1_g000011 Rmu_sc0009579.1_g000017 Rmu_sc0016182.1_g000005 Rmu_sc0016182.1_g000007 Rmu_sc0016279.1_g000002 Rmu_ssc0000387.1_g000031
rosa_roxburghii Rroxscaffold_1G00027390 Rroxscaffold_2G00146810 Rroxscaffold_3G00236600 Rroxscaffold_3G00236620 Rroxscaffold_3G00245350 Rroxscaffold_3G00245400 Rroxscaffold_3G00245440 Rroxscaffold_3G00245480 Rroxscaffold_3G00245560 Rroxscaffold_7G00195770
rosa_rugosa Rorug02G0047800 Rorug02G0047900 Rorug05G0276800 Rorug06G0071900 Rorug07G0145400 Rorug07G0145500 Rorug07G0145600 Rorug07G0145700 Rorug07G0145700 Rorug07G0145800 Rorug07G0211200
rosa_samantha Rh5BG359700 Rh6AG187600 Rh6DG181500 Rh7AG278000 Rh7AG278900 Rh7AG279800 Rh7AG279900 Rh7AG280100 Rh7AG280400 Rh7AG280700 Rh7AG281200 Rh7AG354300 Rh7AG354800 Rh7BG272300 Rh7BG272500 Rh7BG272600 Rh7BG272700 Rh7BG272800 Rh7BG273000 Rh7BG343200 Rh7CG297000 Rh7CG297900 Rh7CG298100 Rh7CG298800 Rh7CG299100 Rh7CG299300 Rh7CG299400 Rh7CG300000 Rh7CG300200 Rh7CG300600 Rh7CG371800 Rh7CG371900
rosa_wichuraiana Rw5G032880 Rw6G016270 Rw7G023930 Rw7G023980 Rw7G023990 Rw7G024000 Rw7G024010 Rw7G024020 Rw7G024030 Rw7G029800 Rw7G030090 Rw7G030140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 50
AccII CGCG 1 cut(s) 892
AcsI RAATTY 1 cut(s) 351
AcuI CTGAAG 1 cut(s) 5
AfaI GTAC 4 cut(s) 18, 450, 666, 831
AfiI CCNNNNNNNGG 1 cut(s) 239
AflII CTTAAG 2 cut(s) 205, 805
AflIII ACRYGT 1 cut(s) 890
AjnI CCWGG 1 cut(s) 397
AluBI AGCT 6 cut(s) 114, 239, 271, 566, 710, 785
AluI AGCT 6 cut(s) 114, 239, 271, 566, 710, 785
Alw26I GTCTC 1 cut(s) 339
AlwNI CAGNNNCTG 1 cut(s) 404
AoxI GGCC 2 cut(s) 257, 949
ApeKI GCWGC 2 cut(s) 430, 710
ApoI RAATTY 1 cut(s) 351
ArsI GACNNNNNNTTYG 2 cut(s) 918, 950
AseI ATTAAT 1 cut(s) 603
AspS9I GGNCC 2 cut(s) 257, 939
AsuHPI GGTGA 3 cut(s) 37, 302, 781
AsuII TTCGAA 2 cut(s) 508, 719
AvaII GGWCC 1 cut(s) 939
BauI CACGAG 2 cut(s) 272, 645
BbsI GAAGAC 1 cut(s) 662
BbvI GCAGC 2 cut(s) 417, 697
BccI CCATC 2 cut(s) 401, 915
BcgI CGANNNNNNTGC 2 cut(s) 612, 646
BciT130I CCWGG 1 cut(s) 399
BciVI GTATCC 1 cut(s) 674
BclI TGATCA 1 cut(s) 558
BcoDI GTCTC 1 cut(s) 339
BfaI CTAG 1 cut(s) 341
BfrI CTTAAG 2 cut(s) 205, 805
BfuI GTATCC 1 cut(s) 674
BglII AGATCT 1 cut(s) 820
BisI GCNGC 2 cut(s) 431, 711
BlsI GCNGC 2 cut(s) 432, 712
BmcAI AGTACT 1 cut(s) 18
Bme1390I CCNGG 1 cut(s) 399
Bme18I GGWCC 1 cut(s) 939
BmgT120I GGNCC 2 cut(s) 257, 939
BmiI GGNNCC 1 cut(s) 941
BmrFI CCNGG 1 cut(s) 399
BmrI ACTGGG 1 cut(s) 758
BmsI GCATC 1 cut(s) 451
BmuI ACTGGG 1 cut(s) 758
BpiI GAAGAC 1 cut(s) 662
Bpu10I CCTNAGC 2 cut(s) 235, 248
Bpu14I TTCGAA 2 cut(s) 508, 719
BpuEI CTTGAG 3 cut(s) 57, 136, 353
BsaBI GATNNNNATC 1 cut(s) 131
BsaJI CCNNGG 2 cut(s) 675, 952
BsaWI WCCGGW 1 cut(s) 40
Bsc4I CCNNNNNNNGG 1 cut(s) 239
Bse1I ACTGG 3 cut(s) 446, 452, 753
Bse3DI GCAATG 2 cut(s) 292, 697
Bse8I GATNNNNATC 1 cut(s) 131
BseBI CCWGG 1 cut(s) 399
BseDI CCNNGG 2 cut(s) 675, 952
BseGI GGATG 2 cut(s) 442, 926
BseJI GATNNNNATC 1 cut(s) 131
BseLI CCNNNNNNNGG 1 cut(s) 239
BseMI GCAATG 2 cut(s) 292, 697
BseMII CTCAG 2 cut(s) 27, 105
BseNI ACTGG 3 cut(s) 446, 452, 753
BseRI GAGGAG 1 cut(s) 392
BseXI GCAGC 2 cut(s) 417, 697
Bsh1236I CGCG 1 cut(s) 892
BshFI GGCC 2 cut(s) 259, 951
BsiSI CCGG 2 cut(s) 41, 56
BslFI GGGAC 1 cut(s) 939
BslI CCNNNNNNNGG 1 cut(s) 239
BsmAI GTCTC 1 cut(s) 339
BsmFI GGGAC 1 cut(s) 939
BsnI GGCC 2 cut(s) 259, 951
Bsp119I TTCGAA 2 cut(s) 508, 719
Bsp143I GATC 4 cut(s) 470, 558, 809, 820
BspANI GGCC 2 cut(s) 259, 951
BspCNI CTCAG 2 cut(s) 26, 104
BspFNI CGCG 1 cut(s) 892
BspLI GGNNCC 1 cut(s) 941
BspT104I TTCGAA 2 cut(s) 508, 719
BspTI CTTAAG 2 cut(s) 205, 805
BsrDI GCAATG 2 cut(s) 292, 697
BsrI ACTGG 3 cut(s) 446, 452, 753
BssECI CCNNGG 2 cut(s) 675, 952
BssMI GATC 4 cut(s) 470, 558, 809, 820
BssSI CACGAG 2 cut(s) 272, 645
BssT1I CCWWGG 2 cut(s) 675, 952
Bst2BI CACGAG 2 cut(s) 272, 645
Bst2UI CCWGG 1 cut(s) 399
BstAFI CTTAAG 2 cut(s) 205, 805
BstBI TTCGAA 2 cut(s) 508, 719
BstDEI CTNAG 5 cut(s) 13, 91, 235, 248, 833
BstF5I GGATG 2 cut(s) 442, 926
BstFNI CGCG 1 cut(s) 892
BstKTI GATC 4 cut(s) 473, 561, 812, 823
BstMAI GTCTC 1 cut(s) 339
BstMBI GATC 4 cut(s) 470, 558, 809, 820
BstMWI GCNNNNNNNGC 2 cut(s) 439, 707
BstNI CCWGG 1 cut(s) 399
BstSCI CCNGG 1 cut(s) 397
BstUI CGCG 1 cut(s) 892
BstV1I GCAGC 2 cut(s) 417, 697
BstV2I GAAGAC 1 cut(s) 662
BstX2I RGATCY 1 cut(s) 820
BstYI RGATCY 1 cut(s) 820
BsuI GTATCC 1 cut(s) 674
BsuRI GGCC 2 cut(s) 259, 951
BtsCI GGATG 2 cut(s) 442, 926
BtsIMutI CAGTG 2 cut(s) 746, 819
CaiI CAGNNNCTG 1 cut(s) 404
Cfr13I GGNCC 2 cut(s) 257, 939
Csp6I GTAC 4 cut(s) 17, 449, 665, 830
CviAII CATG 3 cut(s) 461, 630, 790
CviQI GTAC 4 cut(s) 17, 449, 665, 830
DdeI CTNAG 5 cut(s) 13, 91, 235, 248, 833
DpnI GATC 4 cut(s) 472, 560, 811, 822
DpnII GATC 4 cut(s) 470, 558, 809, 820
Eco130I CCWWGG 2 cut(s) 675, 952
Eco147I AGGCCT 1 cut(s) 951
Eco47I GGWCC 1 cut(s) 939
Eco57I CTGAAG 1 cut(s) 5
EcoO109I RGGNCCY 1 cut(s) 257
EcoRII CCWGG 1 cut(s) 397
EcoT14I CCWWGG 2 cut(s) 675, 952
EcoT22I ATGCAT 2 cut(s) 635, 697
ErhI CCWWGG 2 cut(s) 675, 952
FaeI CATG 3 cut(s) 464, 633, 793
FaqI GGGAC 1 cut(s) 939
FatI CATG 3 cut(s) 460, 629, 789
FbaI TGATCA 1 cut(s) 558
Fnu4HI GCNGC 2 cut(s) 431, 711
FokI GGATG 2 cut(s) 429, 933
Fsp4HI GCNGC 2 cut(s) 431, 711
FspBI CTAG 1 cut(s) 341
GluI GCNGC 2 cut(s) 431, 711
HaeIII GGCC 2 cut(s) 259, 951
HapII CCGG 2 cut(s) 41, 56
Hin1II CATG 3 cut(s) 464, 633, 793
HincII GTYRAC 2 cut(s) 66, 467
HindII GTYRAC 2 cut(s) 66, 467
HindIII AAGCTT 1 cut(s) 112
HinfI GANTC 4 cut(s) 127, 436, 501, 517
HpaII CCGG 2 cut(s) 41, 56
HphI GGTGA 3 cut(s) 37, 302, 781
Hpy166II GTNNAC 3 cut(s) 66, 368, 467
Hpy188I TCNGA 4 cut(s) 94, 126, 406, 883
Hpy188III TCNNGA 1 cut(s) 74
Hpy8I GTNNAC 3 cut(s) 66, 368, 467
HpyAV CCTTC 7 cut(s) 168, 237, 248, 287, 515, 715, 769
HpyCH4IV ACGT 1 cut(s) 667
HpyF10VI GCNNNNNNNGC 2 cut(s) 439, 707
HpyF3I CTNAG 5 cut(s) 13, 91, 235, 248, 833
HpySE526I ACGT 1 cut(s) 667
Hsp92II CATG 3 cut(s) 464, 633, 793
Ksp22I TGATCA 1 cut(s) 558
Kzo9I GATC 4 cut(s) 470, 558, 809, 820
LmnI GCTCC 1 cut(s) 548
Lsp1109I GCAGC 2 cut(s) 417, 697
LweI GCATC 1 cut(s) 451
MaeI CTAG 1 cut(s) 341
MaeII ACGT 1 cut(s) 667
MaeIII GTNAC 2 cut(s) 143, 325
MalI GATC 4 cut(s) 472, 560, 811, 822
MboI GATC 4 cut(s) 470, 558, 809, 820
MboII GAAGA 3 cut(s) 662, 784, 809
MflI RGATCY 1 cut(s) 820
MluCI AATT 7 cut(s) 192, 351, 391, 411, 531, 714, 913
MluI ACGCGT 1 cut(s) 890
MlyI GAGTC 1 cut(s) 510
MnlI CCTC 8 cut(s) 81, 304, 370, 607, 641, 741, 830, 855
Mph1103I ATGCAT 2 cut(s) 635, 697
MseI TTAA 7 cut(s) 165, 186, 206, 597, 603, 806, 872
MslI CAYNNNNRTG 1 cut(s) 660
MspA1I CMGCKG 1 cut(s) 710
MspCI CTTAAG 2 cut(s) 205, 805
MspI CCGG 2 cut(s) 41, 56
MspR9I CCNGG 1 cut(s) 399
MvaI CCWGG 1 cut(s) 399
MvnI CGCG 1 cut(s) 892
MwoI GCNNNNNNNGC 2 cut(s) 439, 707
NdeII GATC 4 cut(s) 470, 558, 809, 820
NlaIII CATG 3 cut(s) 464, 633, 793
NlaIV GGNNCC 1 cut(s) 941
NmuCI GTSAC 1 cut(s) 325
NsiI ATGCAT 2 cut(s) 635, 697
NspV TTCGAA 2 cut(s) 508, 719
PceI AGGCCT 1 cut(s) 951
PfeI GAWTC 3 cut(s) 127, 436, 517
PkrI GCNGC 2 cut(s) 432, 712
PleI GAGTC 1 cut(s) 509
PpsI GAGTC 1 cut(s) 509
PshBI ATTAAT 1 cut(s) 603
PsiI TTATAA 1 cut(s) 50
Psp6I CCWGG 1 cut(s) 397
PspGI CCWGG 1 cut(s) 397
PspN4I GGNNCC 1 cut(s) 941
PspPI GGNCC 2 cut(s) 257, 939
PstNI CAGNNNCTG 1 cut(s) 404
PsuI RGATCY 1 cut(s) 820
PvuII CAGCTG 1 cut(s) 710
RsaI GTAC 4 cut(s) 18, 450, 666, 831
RsaNI GTAC 4 cut(s) 17, 449, 665, 830
RseI CAYNNNNRTG 1 cut(s) 660
SaqAI TTAA 7 cut(s) 165, 186, 206, 597, 603, 806, 872
SatI GCNGC 2 cut(s) 431, 711
Sau3AI GATC 4 cut(s) 470, 558, 809, 820
Sau96I GGNCC 2 cut(s) 257, 939
ScaI AGTACT 1 cut(s) 18
SchI GAGTC 1 cut(s) 510
ScrFI CCNGG 1 cut(s) 399
SfaNI GCATC 1 cut(s) 451
SfuI TTCGAA 2 cut(s) 508, 719
SinI GGWCC 1 cut(s) 939
SmiMI CAYNNNNRTG 1 cut(s) 660
SmlI CTYRAG 5 cut(s) 72, 115, 205, 332, 805
SmoI CTYRAG 5 cut(s) 72, 115, 205, 332, 805
Sse9I AATT 7 cut(s) 192, 351, 391, 411, 531, 714, 913
SseBI AGGCCT 1 cut(s) 951
SspI AATATT 1 cut(s) 851
SspMI CTAG 1 cut(s) 341
StuI AGGCCT 1 cut(s) 951
StyD4I CCNGG 1 cut(s) 397
StyI CCWWGG 2 cut(s) 675, 952
TaiI ACGT 1 cut(s) 670
TaqI TCGA 5 cut(s) 279, 508, 622, 719, 857
TasI AATT 7 cut(s) 192, 351, 391, 411, 531, 714, 913
TatI WGTACW 1 cut(s) 16
TfiI GAWTC 3 cut(s) 127, 436, 517
Tru1I TTAA 7 cut(s) 165, 186, 206, 597, 603, 806, 872
Tru9I TTAA 7 cut(s) 165, 186, 206, 597, 603, 806, 872
TscAI CASTG 2 cut(s) 753, 819
TseFI GTSAC 1 cut(s) 325
TseI GCWGC 2 cut(s) 430, 710
Tsp45I GTSAC 1 cut(s) 325
TspDTI ATGAA 4 cut(s) 618, 806, 810, 843
TspRI CASTG 2 cut(s) 753, 819
Vha464I CTTAAG 2 cut(s) 205, 805
VpaK11BI GGWCC 1 cut(s) 939
VspI ATTAAT 1 cut(s) 603
XapI RAATTY 1 cut(s) 351
XspI CTAG 1 cut(s) 341
ZrmI AGTACT 1 cut(s) 18
Zsp2I ATGCAT 2 cut(s) 635, 697
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.