Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000190

Physical Location & Seq

Genomic Coordinates Forward (+)

46810059 .. 46810517

Gene Structure 459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG371800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGCCCTCATTATGCTCTCTCGCATTCCAGGTGAATCGCTGCGAGCCGCGACTGATAACACCTGCAAAACCAACACCACATGAAACAAAGCTGCTGTCGGATATCGACGACAAGCAAACCCTCAGGTTCCATGTTCCATTCATCATTGCTTACGAGAACAATCCTTCAATATTGTTGAAACAAAATGACCCTGTTAAGGTGATTAGTGACGCGCTGAGTAGAGCACTGGTGTATTACTACCCTTTCGCTGGTAGGCTCAGGGAAGTGCATAAGAAAAAGCTTACGGTGGACTGCACTGGAGAAGGCATCTTGTTCGTCGAGGCTAATGCCAACGCCACGCTCGACGAACTCAAGGATGCAATTCTACCGCCTTGTCCATTCCTAGAGGAGTTCCTGTTTAATGTGCCAGGCTCTGATGGTATTGTTGGTTCTCCTTTGATCTTGATACAGGTGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006631 GO:0006690 GO:0008150 GO:0008152 GO:0008374 GO:0009987 GO:0010327 GO:0010597 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0019372 GO:0019752 GO:0032787 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0071704 GO:1901568

KEGG Pathways

Metabolic & Signaling

ko00592 ko01110 map00592 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

152

Amino Acids

16.95

Weight (kDa)

5.9

Isoelectric Point (pI)

40.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	11 - 151	1.4e-24	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03480 AT5G17540
fragaria_vesca	FvH4_2g12510 FvH4_3g38880 FvH4_3g40890 FvH4_5g24240 FvH4_5g24250 FvH4_5g24270 FvH4_5g24273 FvH4_6g05391 FvH4_6g05392
malus_domestica	MD00G1201900.v1.1 MD00G1202100.v1.1 MD02G1001400.v1.1 MD02G1013900.v1.1 MD02G1014800.v1.1 MD02G1015000.v1.1 MD02G1015200.v1.1 MD03G1080200.v1.1 MD06G1016200.v1.1 MD06G1016500.v1.1 MD06G1017700.v1.1 MD06G1018100.v1.1 MD06G1018200.v1.1 MD06G1018400.v1.1 MD06G1018700.v1.1 MD06G1018800.v1.1 MD06G1019000.v1.1 MD06G1019100.v1.1 MD06G1019300.v1.1 MD06G1019800.v1.1 MD06G1020400.v1.1 MD06G1020700.v1.1 MD06G1020800.v1.1 MD06G1020900.v1.1 MD12G1038300.v1.1 MD12G1039400.v1.1
prunus_persica	Prupe.5G017800_v2.0.a1 Prupe.5G017900_v2.0.a1 Prupe.5G018000_v2.0.a1 Prupe.5G018100_v2.0.a1 Prupe.5G018200_v2.0.a1 Prupe.8G000100_v2.0.a1
pyrus_communis	pycom02g01330 pycom02g01390 pycom03g06420 pycom06g01300 pycom06g01320 pycom06g01340 pycom06g01500 pycom06g01510 pycom06g01520 pycom12g03300 pycom12g03320
rosa_chinensis	RchiOBHm_Chr5g0051841 RchiOBHm_Chr6g0272991 RchiOBHm_Chr7g0213951 RchiOBHm_Chr7g0214051 RchiOBHm_Chr7g0214131 RchiOBHm_Chr7g0214161 RchiOBHm_Chr7g0214231 RchiOBHm_Chr7g0214321 RchiOBHm_Chr7g0214351 RchiOBHm_Chr7g0214391 RchiOBHm_Chr7g0214451 RchiOBHm_Chr7g0222591
rosa_laevigata	RLG00000002044 RLG00000002744 RLG00000002751 RLG00000002752 RLG00000002755 RLG00000002756 RLG00000002757 RLG00000002758 RLG00000002762 RLG00000002763 RLG00000013652
rosa_multiflora	Rmu_sc0000328.1_g000008 Rmu_sc0003764.1_g000001 Rmu_sc0003764.1_g000002 Rmu_sc0004199.1_g000004 Rmu_sc0004199.1_g000006 Rmu_sc0004199.1_g000014 Rmu_sc0004199.1_g000019 Rmu_sc0004199.1_g000022 Rmu_sc0005063.1_g000018 Rmu_sc0006422.1_g000030 Rmu_sc0006422.1_g000031 Rmu_sc0009579.1_g000011 Rmu_sc0009579.1_g000017 Rmu_sc0016182.1_g000005 Rmu_sc0016182.1_g000007 Rmu_sc0016279.1_g000002 Rmu_ssc0000387.1_g000031
rosa_roxburghii	Rroxscaffold_1G00027390 Rroxscaffold_2G00146810 Rroxscaffold_3G00236600 Rroxscaffold_3G00236620 Rroxscaffold_3G00245350 Rroxscaffold_3G00245400 Rroxscaffold_3G00245440 Rroxscaffold_3G00245480 Rroxscaffold_3G00245560 Rroxscaffold_7G00195770
rosa_rugosa	Rorug02G0047800 Rorug02G0047900 Rorug05G0276800 Rorug06G0071900 Rorug07G0145400 Rorug07G0145500 Rorug07G0145600 Rorug07G0145700 Rorug07G0145700 Rorug07G0145800 Rorug07G0211200
rosa_samantha	Rh5BG359700 Rh6AG187600 Rh6DG181500 Rh7AG278000 Rh7AG278900 Rh7AG279800 Rh7AG279900 Rh7AG280100 Rh7AG280400 Rh7AG280700 Rh7AG281200 Rh7AG354300 Rh7AG354800 Rh7BG272300 Rh7BG272500 Rh7BG272600 Rh7BG272700 Rh7BG272800 Rh7BG273000 Rh7BG343200 Rh7CG297000 Rh7CG297900 Rh7CG298100 Rh7CG298800 Rh7CG299100 Rh7CG299300 Rh7CG299400 Rh7CG300000 Rh7CG300200 Rh7CG300600 Rh7CG371800 Rh7CG371900
rosa_wichuraiana	Rw5G032880 Rw6G016270 Rw7G023930 Rw7G023980 Rw7G023990 Rw7G024000 Rw7G024010 Rw7G024020 Rw7G024030 Rw7G029800 Rw7G030090 Rw7G030140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	70
Acc36I	ACCTGC	1 cut(s)	70
AccII	CGCG	2 cut(s)	49, 212
AciI	CCGC	2 cut(s)	47, 368
AfiI	CCNNNNNNNGG	2 cut(s)	196, 248
AgsI	TTSAA	2 cut(s)	168, 178
AjnI	CCWGG	2 cut(s)	27, 406
AluBI	AGCT	2 cut(s)	91, 280
AluI	AGCT	2 cut(s)	91, 280
Alw21I	GWGCWC	1 cut(s)	226
AlwNI	CAGNNNCTG	1 cut(s)	413
ApeKI	GCWGC	2 cut(s)	39, 91
ArsI	GACNNNNNNTTYG	2 cut(s)	80, 112
AspLEI	GCGC	1 cut(s)	214
AsuHPI	GGTGA	2 cut(s)	43, 211
AxyI	CCTNAGG	1 cut(s)	122
Bbv12I	GWGCWC	1 cut(s)	226
BbvI	GCAGC	2 cut(s)	26, 78
BccI	CCATC	1 cut(s)	410
BcgI	CGANNNNNNTGC	4 cut(s)	295, 308, 329, 342
BciT130I	CCWGG	2 cut(s)	29, 408
BfaI	CTAG	1 cut(s)	383
BfuAI	ACCTGC	1 cut(s)	70
BisI	GCNGC	3 cut(s)	40, 47, 92
BlsI	GCNGC	3 cut(s)	41, 48, 93
Bme1390I	CCNGG	2 cut(s)	29, 408
BmiI	GGNNCC	1 cut(s)	128
BmrFI	CCNGG	2 cut(s)	29, 408
BmsI	GCATC	2 cut(s)	315, 346
BpmI	CTGGAG	1 cut(s)	318
Bpu10I	CCTNAGC	1 cut(s)	257
BpuEI	CTTGAG	1 cut(s)	335
BsaXI	ACNNNNNCTCC	2 cut(s)	380, 410
Bsc4I	CCNNNNNNNGG	2 cut(s)	196, 248
Bse1I	ACTGG	2 cut(s)	231, 301
Bse21I	CCTNAGG	1 cut(s)	122
Bse3DI	GCAATG	1 cut(s)	144
BseBI	CCWGG	2 cut(s)	29, 408
BseGI	GGATG	1 cut(s)	361
BseLI	CCNNNNNNNGG	2 cut(s)	196, 248
BseMI	GCAATG	1 cut(s)	144
BseMII	CTCAG	3 cut(s)	136, 206, 271
BseNI	ACTGG	2 cut(s)	231, 301
BseRI	GAGGAG	1 cut(s)	401
BseXI	GCAGC	2 cut(s)	26, 78
BsgI	GTGCAG	1 cut(s)	277
Bsh1236I	CGCG	2 cut(s)	49, 212
BsiHKAI	GWGCWC	1 cut(s)	226
BslI	CCNNNNNNNGG	2 cut(s)	196, 248
BsmI	GAATGC	1 cut(s)	23
Bsp1286I	GDGCHC	1 cut(s)	226
Bsp143I	GATC	1 cut(s)	438
BspACI	CCGC	2 cut(s)	47, 368
BspCNI	CTCAG	3 cut(s)	135, 207, 270
BspFNI	CGCG	2 cut(s)	49, 212
BspLI	GGNNCC	1 cut(s)	128
BspMI	ACCTGC	1 cut(s)	70
BsrDI	GCAATG	1 cut(s)	144
BsrI	ACTGG	2 cut(s)	231, 301
BssMI	GATC	1 cut(s)	438
Bst2UI	CCWGG	2 cut(s)	29, 408
Bst4CI	ACNGT	1 cut(s)	286
BstC8I	GCNNGC	1 cut(s)	44
BstDEI	CTNAG	3 cut(s)	122, 215, 257
BstF5I	GGATG	1 cut(s)	361
BstFNI	CGCG	2 cut(s)	49, 212
BstHHI	GCGC	1 cut(s)	214
BstKTI	GATC	1 cut(s)	441
BstMBI	GATC	1 cut(s)	438
BstNI	CCWGG	2 cut(s)	29, 408
BstSCI	CCNGG	2 cut(s)	27, 406
BstUI	CGCG	2 cut(s)	49, 212
BstV1I	GCAGC	2 cut(s)	26, 78
Bsu36I	CCTNAGG	1 cut(s)	122
BtsCI	GGATG	1 cut(s)	361
BtsIMutI	CAGTG	2 cut(s)	224, 294
BveI	ACCTGC	1 cut(s)	70
Cac8I	GCNNGC	1 cut(s)	44
CaiI	CAGNNNCTG	1 cut(s)	413
CfoI	GCGC	1 cut(s)	214
CseI	GACGC	1 cut(s)	218
CviAII	CATG	2 cut(s)	80, 131
CviJI	RGCY	6 cut(s)	46, 91, 256, 280, 323, 411
CviKI_1	RGCY	6 cut(s)	46, 91, 256, 280, 323, 411
DdeI	CTNAG	3 cut(s)	122, 215, 257
DpnI	GATC	1 cut(s)	440
DpnII	GATC	1 cut(s)	438
Eco32I	GATATC	1 cut(s)	103
Eco81I	CCTNAGG	1 cut(s)	122
EcoRII	CCWGG	2 cut(s)	27, 406
EcoRV	GATATC	1 cut(s)	103
FaeI	CATG	2 cut(s)	83, 134
FaiI	YATR	4 cut(s)	13, 81, 132, 270
FatI	CATG	2 cut(s)	79, 130
Fnu4HI	GCNGC	3 cut(s)	40, 47, 92
FokI	GGATG	1 cut(s)	368
Fsp4HI	GCNGC	3 cut(s)	40, 47, 92
FspBI	CTAG	1 cut(s)	383
GlaI	GCGC	1 cut(s)	213
GluI	GCNGC	3 cut(s)	40, 47, 92
GsuI	CTGGAG	1 cut(s)	318
HgaI	GACGC	1 cut(s)	218
HhaI	GCGC	1 cut(s)	214
Hin1II	CATG	2 cut(s)	83, 134
Hin6I	GCGC	1 cut(s)	212
HinP1I	GCGC	1 cut(s)	212
HindIII	AAGCTT	1 cut(s)	278
HinfI	GANTC	1 cut(s)	34
HphI	GGTGA	2 cut(s)	43, 211
Hpy166II	GTNNAC	1 cut(s)	289
Hpy188I	TCNGA	2 cut(s)	100, 415
Hpy188III	TCNNGA	1 cut(s)	442
Hpy8I	GTNNAC	1 cut(s)	289
Hpy99I	CGWCG	3 cut(s)	110, 320, 347
HpyAV	CCTTC	2 cut(s)	174, 296
HpyCH4III	ACNGT	1 cut(s)	286
HpyCH4V	TGCA	4 cut(s)	65, 268, 294, 359
HpyF3I	CTNAG	3 cut(s)	122, 215, 257
Hsp92II	CATG	2 cut(s)	83, 134
HspAI	GCGC	1 cut(s)	212
Kzo9I	GATC	1 cut(s)	438
Lsp1109I	GCAGC	2 cut(s)	26, 78
LweI	GCATC	2 cut(s)	315, 346
MaeI	CTAG	1 cut(s)	383
MaeIII	GTNAC	1 cut(s)	206
MalI	GATC	1 cut(s)	440
MboI	GATC	1 cut(s)	438
MhlI	GDGCHC	1 cut(s)	226
MluCI	AATT	1 cut(s)	360
MmeI	TCCRAC	1 cut(s)	78
MnlI	CCTC	4 cut(s)	16, 131, 313, 379
MseI	TTAA	2 cut(s)	195, 399
MspR9I	CCNGG	2 cut(s)	29, 408
Mva1269I	GAATGC	1 cut(s)	23
MvaI	CCWGG	2 cut(s)	29, 408
MvnI	CGCG	2 cut(s)	49, 212
NdeII	GATC	1 cut(s)	438
NlaIII	CATG	2 cut(s)	83, 134
NlaIV	GGNNCC	1 cut(s)	128
NmuCI	GTSAC	1 cut(s)	206
PaqCI	CACCTGC	1 cut(s)	70
PcsI	WCGNNNNNNNCGW	1 cut(s)	339
PctI	GAATGC	1 cut(s)	23
PfeI	GAWTC	1 cut(s)	34
PkrI	GCNGC	3 cut(s)	41, 48, 93
Psp6I	CCWGG	2 cut(s)	27, 406
PspGI	CCWGG	2 cut(s)	27, 406
PspN4I	GGNNCC	1 cut(s)	128
PsrI	GAACNNNNNNTAC	2 cut(s)	412, 444
PstNI	CAGNNNCTG	1 cut(s)	413
SaqAI	TTAA	2 cut(s)	195, 399
SatI	GCNGC	3 cut(s)	40, 47, 92
Sau3AI	GATC	1 cut(s)	438
ScrFI	CCNGG	2 cut(s)	29, 408
SduI	GDGCHC	1 cut(s)	226
SetI	ASST	7 cut(s)	33, 64, 93, 128, 201, 282, 453
SfaNI	GCATC	2 cut(s)	315, 346
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
Sse9I	AATT	1 cut(s)	360
SsiI	CCGC	2 cut(s)	47, 368
SspI	AATATT	1 cut(s)	171
SspMI	CTAG	1 cut(s)	383
StyD4I	CCNGG	2 cut(s)	27, 406
TaaI	ACNGT	1 cut(s)	286
TaqI	TCGA	3 cut(s)	105, 318, 342
TasI	AATT	1 cut(s)	360
TauI	GCSGC	1 cut(s)	49
TfiI	GAWTC	1 cut(s)	34
Tru1I	TTAA	2 cut(s)	195, 399
Tru9I	TTAA	2 cut(s)	195, 399
TscAI	CASTG	2 cut(s)	231, 301
TseFI	GTSAC	1 cut(s)	206
TseI	GCWGC	2 cut(s)	39, 91
Tsp45I	GTSAC	1 cut(s)	206
TspDTI	ATGAA	2 cut(s)	96, 130
TspRI	CASTG	2 cut(s)	231, 301
XspI	CTAG	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.