Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009579.1

Orthogroup ID

OG0000190

Physical Location & Seq

Genomic Coordinates Reverse (-)

67113 .. 67571

Gene Structure 459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009579.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

atggcctcattgtcccctctcgtattccaggtgaatcgttgtgagccgcgactaataacacctgcaaaaccaacaccacatgaaacaaaaatgctgtcagatatcgacaaccagcaaggcctcaggttccatgttccattcatcatgtcttacaagaataatccttcaatattgttgaaacaaaatgaccctgttaaggtgattagtgacgctcttagtagagcactggagtattactaccctttggctggtagactcagggaagtgcataagaaaaagcttatggtgaactgcagtggagaaggcatctcgttcgtcgaggctaatgccaacatcacgcttgacgaacttgaggatgcaattctaccgccttgtccattcttagaggagttcttgtttaacgtgccaggctctgatggtattcttggttctcctttgatcttcatacaggtgaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006631 GO:0006690 GO:0008150 GO:0008152 GO:0008374 GO:0009987 GO:0010327 GO:0010597 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0019372 GO:0019752 GO:0032787 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0071704 GO:1901568

KEGG Pathways

Metabolic & Signaling

ko00592 ko01110 map00592 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

152

Amino Acids

17.02

Weight (kDa)

5.9

Isoelectric Point (pI)

49.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03480 AT5G17540
fragaria_vesca	FvH4_2g12510 FvH4_3g38880 FvH4_3g40890 FvH4_5g24240 FvH4_5g24250 FvH4_5g24270 FvH4_5g24273 FvH4_6g05391 FvH4_6g05392
malus_domestica	MD00G1201900.v1.1 MD00G1202100.v1.1 MD02G1001400.v1.1 MD02G1013900.v1.1 MD02G1014800.v1.1 MD02G1015000.v1.1 MD02G1015200.v1.1 MD03G1080200.v1.1 MD06G1016200.v1.1 MD06G1016500.v1.1 MD06G1017700.v1.1 MD06G1018100.v1.1 MD06G1018200.v1.1 MD06G1018400.v1.1 MD06G1018700.v1.1 MD06G1018800.v1.1 MD06G1019000.v1.1 MD06G1019100.v1.1 MD06G1019300.v1.1 MD06G1019800.v1.1 MD06G1020400.v1.1 MD06G1020700.v1.1 MD06G1020800.v1.1 MD06G1020900.v1.1 MD12G1038300.v1.1 MD12G1039400.v1.1
prunus_persica	Prupe.5G017800_v2.0.a1 Prupe.5G017900_v2.0.a1 Prupe.5G018000_v2.0.a1 Prupe.5G018100_v2.0.a1 Prupe.5G018200_v2.0.a1 Prupe.8G000100_v2.0.a1
pyrus_communis	pycom02g01330 pycom02g01390 pycom03g06420 pycom06g01300 pycom06g01320 pycom06g01340 pycom06g01500 pycom06g01510 pycom06g01520 pycom12g03300 pycom12g03320
rosa_chinensis	RchiOBHm_Chr5g0051841 RchiOBHm_Chr6g0272991 RchiOBHm_Chr7g0213951 RchiOBHm_Chr7g0214051 RchiOBHm_Chr7g0214131 RchiOBHm_Chr7g0214161 RchiOBHm_Chr7g0214231 RchiOBHm_Chr7g0214321 RchiOBHm_Chr7g0214351 RchiOBHm_Chr7g0214391 RchiOBHm_Chr7g0214451 RchiOBHm_Chr7g0222591
rosa_laevigata	RLG00000002044 RLG00000002744 RLG00000002751 RLG00000002752 RLG00000002755 RLG00000002756 RLG00000002757 RLG00000002758 RLG00000002762 RLG00000002763 RLG00000013652
rosa_multiflora	Rmu_sc0000328.1_g000008 Rmu_sc0003764.1_g000001 Rmu_sc0003764.1_g000002 Rmu_sc0004199.1_g000004 Rmu_sc0004199.1_g000006 Rmu_sc0004199.1_g000014 Rmu_sc0004199.1_g000019 Rmu_sc0004199.1_g000022 Rmu_sc0005063.1_g000018 Rmu_sc0006422.1_g000030 Rmu_sc0006422.1_g000031 Rmu_sc0009579.1_g000011 Rmu_sc0009579.1_g000017 Rmu_sc0016182.1_g000005 Rmu_sc0016182.1_g000007 Rmu_sc0016279.1_g000002 Rmu_ssc0000387.1_g000031
rosa_roxburghii	Rroxscaffold_1G00027390 Rroxscaffold_2G00146810 Rroxscaffold_3G00236600 Rroxscaffold_3G00236620 Rroxscaffold_3G00245350 Rroxscaffold_3G00245400 Rroxscaffold_3G00245440 Rroxscaffold_3G00245480 Rroxscaffold_3G00245560 Rroxscaffold_7G00195770
rosa_rugosa	Rorug02G0047800 Rorug02G0047900 Rorug05G0276800 Rorug06G0071900 Rorug07G0145400 Rorug07G0145500 Rorug07G0145600 Rorug07G0145700 Rorug07G0145700 Rorug07G0145800 Rorug07G0211200
rosa_samantha	Rh5BG359700 Rh6AG187600 Rh6DG181500 Rh7AG278000 Rh7AG278900 Rh7AG279800 Rh7AG279900 Rh7AG280100 Rh7AG280400 Rh7AG280700 Rh7AG281200 Rh7AG354300 Rh7AG354800 Rh7BG272300 Rh7BG272500 Rh7BG272600 Rh7BG272700 Rh7BG272800 Rh7BG273000 Rh7BG343200 Rh7CG297000 Rh7CG297900 Rh7CG298100 Rh7CG298800 Rh7CG299100 Rh7CG299300 Rh7CG299400 Rh7CG300000 Rh7CG300200 Rh7CG300600 Rh7CG371800 Rh7CG371900
rosa_wichuraiana	Rw5G032880 Rw6G016270 Rw7G023930 Rw7G023980 Rw7G023990 Rw7G024000 Rw7G024010 Rw7G024020 Rw7G024030 Rw7G029800 Rw7G030090 Rw7G030140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	70
Acc36I	ACCTGC	1 cut(s)	70
AccI	GTMKAC	1 cut(s)	253
AccII	CGCG	1 cut(s)	49
AciI	CCGC	2 cut(s)	47, 368
AfiI	CCNNNNNNNGG	2 cut(s)	196, 248
AgsI	TTSAA	2 cut(s)	168, 178
AjnI	CCWGG	2 cut(s)	27, 406
AluBI	AGCT	1 cut(s)	280
AluI	AGCT	1 cut(s)	280
Alw21I	GWGCWC	1 cut(s)	226
AlwNI	CAGNNNCTG	1 cut(s)	413
AoxI	GGCC	2 cut(s)	3, 118
ArsI	GACNNNNNNTTYG	2 cut(s)	80, 112
AsuHPI	GGTGA	3 cut(s)	43, 211, 298
AxyI	CCTNAGG	1 cut(s)	122
Bbv12I	GWGCWC	1 cut(s)	226
BccI	CCATC	1 cut(s)	410
BcgI	CGANNNNNNTGC	4 cut(s)	295, 308, 329, 342
BciT130I	CCWGG	2 cut(s)	29, 408
BfmI	CTRYAG	1 cut(s)	292
BfuAI	ACCTGC	1 cut(s)	70
BisI	GCNGC	1 cut(s)	47
BlsI	GCNGC	1 cut(s)	48
Bme1390I	CCNGG	2 cut(s)	29, 408
BmiI	GGNNCC	1 cut(s)	128
BmrFI	CCNGG	2 cut(s)	29, 408
BmsI	GCATC	2 cut(s)	315, 346
BpmI	CTGGAG	1 cut(s)	248
BpuEI	CTTGAG	1 cut(s)	371
BsaXI	ACNNNNNCTCC	2 cut(s)	380, 410
Bsc4I	CCNNNNNNNGG	2 cut(s)	196, 248
Bse1I	ACTGG	1 cut(s)	231
Bse21I	CCTNAGG	1 cut(s)	122
BseBI	CCWGG	2 cut(s)	29, 408
BseGI	GGATG	1 cut(s)	361
BseLI	CCNNNNNNNGG	2 cut(s)	196, 248
BseMII	CTCAG	2 cut(s)	136, 271
BseNI	ACTGG	1 cut(s)	231
BseRI	GAGGAG	1 cut(s)	401
Bsh1236I	CGCG	1 cut(s)	49
BshFI	GGCC	2 cut(s)	5, 120
BsiHKAI	GWGCWC	1 cut(s)	226
BslI	CCNNNNNNNGG	2 cut(s)	196, 248
BsnI	GGCC	2 cut(s)	5, 120
Bsp1286I	GDGCHC	1 cut(s)	226
Bsp143I	GATC	1 cut(s)	438
BspACI	CCGC	2 cut(s)	47, 368
BspANI	GGCC	2 cut(s)	5, 120
BspCNI	CTCAG	2 cut(s)	135, 270
BspFNI	CGCG	1 cut(s)	49
BspLI	GGNNCC	1 cut(s)	128
BspMAI	CTGCAG	1 cut(s)	296
BspMI	ACCTGC	1 cut(s)	70
BsrI	ACTGG	1 cut(s)	231
BssMI	GATC	1 cut(s)	438
Bst2UI	CCWGG	2 cut(s)	29, 408
BstDEI	CTNAG	4 cut(s)	122, 215, 257, 382
BstF5I	GGATG	1 cut(s)	361
BstFNI	CGCG	1 cut(s)	49
BstKTI	GATC	1 cut(s)	441
BstMBI	GATC	1 cut(s)	438
BstNI	CCWGG	2 cut(s)	29, 408
BstSCI	CCNGG	2 cut(s)	27, 406
BstSFI	CTRYAG	1 cut(s)	292
BstUI	CGCG	1 cut(s)	49
Bsu36I	CCTNAGG	1 cut(s)	122
BsuRI	GGCC	2 cut(s)	5, 120
BtsCI	GGATG	1 cut(s)	361
BtsI	GCAGTG	1 cut(s)	301
BtsIMutI	CAGTG	2 cut(s)	224, 301
BveI	ACCTGC	1 cut(s)	70
CaiI	CAGNNNCTG	1 cut(s)	413
CseI	GACGC	1 cut(s)	218
CviAII	CATG	3 cut(s)	80, 131, 145
CviJI	RGCY	7 cut(s)	5, 46, 120, 248, 280, 323, 411
CviKI_1	RGCY	7 cut(s)	5, 46, 120, 248, 280, 323, 411
DdeI	CTNAG	4 cut(s)	122, 215, 257, 382
DpnI	GATC	1 cut(s)	440
DpnII	GATC	1 cut(s)	438
Eco147I	AGGCCT	1 cut(s)	120
Eco32I	GATATC	1 cut(s)	103
Eco81I	CCTNAGG	1 cut(s)	122
EcoRII	CCWGG	2 cut(s)	27, 406
EcoRV	GATATC	1 cut(s)	103
FaeI	CATG	3 cut(s)	83, 134, 148
FaiI	YATR	6 cut(s)	81, 132, 146, 270, 284, 446
FatI	CATG	3 cut(s)	79, 130, 144
FblI	GTMKAC	1 cut(s)	253
Fnu4HI	GCNGC	1 cut(s)	47
FokI	GGATG	1 cut(s)	368
Fsp4HI	GCNGC	1 cut(s)	47
GluI	GCNGC	1 cut(s)	47
GsuI	CTGGAG	1 cut(s)	248
HaeIII	GGCC	2 cut(s)	5, 120
HgaI	GACGC	1 cut(s)	218
Hin1II	CATG	3 cut(s)	83, 134, 148
HindIII	AAGCTT	1 cut(s)	278
HinfI	GANTC	2 cut(s)	34, 255
HphI	GGTGA	3 cut(s)	43, 211, 298
Hpy166II	GTNNAC	2 cut(s)	254, 289
Hpy188I	TCNGA	2 cut(s)	100, 415
Hpy8I	GTNNAC	2 cut(s)	254, 289
Hpy99I	CGWCG	1 cut(s)	320
HpyAV	CCTTC	2 cut(s)	174, 296
HpyCH4IV	ACGT	1 cut(s)	402
HpyCH4V	TGCA	4 cut(s)	65, 268, 294, 359
HpyF3I	CTNAG	4 cut(s)	122, 215, 257, 382
HpySE526I	ACGT	1 cut(s)	402
Hsp92II	CATG	3 cut(s)	83, 134, 148
Kzo9I	GATC	1 cut(s)	438
LweI	GCATC	2 cut(s)	315, 346
MaeII	ACGT	1 cut(s)	402
MaeIII	GTNAC	1 cut(s)	206
MalI	GATC	1 cut(s)	440
MboI	GATC	1 cut(s)	438
MboII	GAAGA	1 cut(s)	433
MhlI	GDGCHC	1 cut(s)	226
MluCI	AATT	1 cut(s)	360
MlyI	GAGTC	1 cut(s)	249
MnlI	CCTC	6 cut(s)	16, 27, 131, 313, 346, 379
MseI	TTAA	2 cut(s)	195, 399
MslI	CAYNNNNRTG	1 cut(s)	449
MspR9I	CCNGG	2 cut(s)	29, 408
MvaI	CCWGG	2 cut(s)	29, 408
MvnI	CGCG	1 cut(s)	49
NdeII	GATC	1 cut(s)	438
NlaIII	CATG	3 cut(s)	83, 134, 148
NlaIV	GGNNCC	1 cut(s)	128
NmuCI	GTSAC	1 cut(s)	206
PaqCI	CACCTGC	1 cut(s)	70
PceI	AGGCCT	1 cut(s)	120
PfeI	GAWTC	1 cut(s)	34
PkrI	GCNGC	1 cut(s)	48
PleI	GAGTC	1 cut(s)	249
PpsI	GAGTC	1 cut(s)	249
Psp6I	CCWGG	2 cut(s)	27, 406
PspGI	CCWGG	2 cut(s)	27, 406
PspN4I	GGNNCC	1 cut(s)	128
PsrI	GAACNNNNNNTAC	2 cut(s)	412, 444
PstI	CTGCAG	1 cut(s)	296
PstNI	CAGNNNCTG	1 cut(s)	413
RseI	CAYNNNNRTG	1 cut(s)	449
SaqAI	TTAA	2 cut(s)	195, 399
SatI	GCNGC	1 cut(s)	47
Sau3AI	GATC	1 cut(s)	438
SchI	GAGTC	1 cut(s)	249
ScrFI	CCNGG	2 cut(s)	29, 408
SduI	GDGCHC	1 cut(s)	226
SetI	ASST	7 cut(s)	33, 64, 128, 201, 282, 405, 453
SfaNI	GCATC	2 cut(s)	315, 346
SfcI	CTRYAG	1 cut(s)	292
SmiMI	CAYNNNNRTG	1 cut(s)	449
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
Sse9I	AATT	1 cut(s)	360
SseBI	AGGCCT	1 cut(s)	120
SsiI	CCGC	2 cut(s)	47, 368
SspI	AATATT	1 cut(s)	171
StuI	AGGCCT	1 cut(s)	120
StyD4I	CCNGG	2 cut(s)	27, 406
TaiI	ACGT	1 cut(s)	405
TaqI	TCGA	2 cut(s)	105, 318
TasI	AATT	1 cut(s)	360
TauI	GCSGC	1 cut(s)	49
TfiI	GAWTC	1 cut(s)	34
Tru1I	TTAA	2 cut(s)	195, 399
Tru9I	TTAA	2 cut(s)	195, 399
TscAI	CASTG	2 cut(s)	231, 301
TseFI	GTSAC	1 cut(s)	206
Tsp45I	GTSAC	1 cut(s)	206
TspDTI	ATGAA	3 cut(s)	96, 130, 433
TspRI	CASTG	2 cut(s)	231, 301
XmiI	GTMKAC	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.