pycom12g03300

Benzyl alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0000190
Physical Location & Seq
Forward (+)
3038012 .. 3040284
2273 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g03300.2

Sequence Viewer

Length: 465 bp
ATGGCATCTTCTCCTAATTCTTTGGTCTTCACAGTGCGGAGGCGCCAACCAGAACTGGTGGCGCCGGCAAAGGCCACGCCATATGAGTTTCGACAACTTTCTGATATCGATGACCAAGAAGGTCTTCGGTTTCAGATCCCCGTGATACAGTTTTATAAATACGATCCCTCCATGCAAGGAAGGGATCCTGTGCATGTCCTTAGAGAGGCAATTGCACAAACCTTAGTGTTTTACTACCCTTTTGCCGGTAGGCTCAGGGAGGGACCTGACCGGAAGCTCACGGTGGAATGCACGGCTGAGGGTGTCATGTTCATTGAGGCTGATGCCGACGTTACCCTAGAGCAATTCGGTGACGCCCTTCAGCCACCGTTCCCTTGCTTGGAGGAGCTTCTTTATAATGTTCCTGGTTCCGATGGGGTTCTTAATTGCCCACTCCTGCTAATTCAGCGTCGCCCTCCGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

155

Amino Acids

17.42

Weight (kDa)

4.79

Isoelectric Point (pI)

70.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000190)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03480 AT5G17540
fragaria_vesca FvH4_2g12510 FvH4_3g38880 FvH4_3g40890 FvH4_5g24240 FvH4_5g24250 FvH4_5g24270 FvH4_5g24273 FvH4_6g05391 FvH4_6g05392
malus_domestica MD00G1201900.v1.1 MD00G1202100.v1.1 MD02G1001400.v1.1 MD02G1013900.v1.1 MD02G1014800.v1.1 MD02G1015000.v1.1 MD02G1015200.v1.1 MD03G1080200.v1.1 MD06G1016200.v1.1 MD06G1016500.v1.1 MD06G1017700.v1.1 MD06G1018100.v1.1 MD06G1018200.v1.1 MD06G1018400.v1.1 MD06G1018700.v1.1 MD06G1018800.v1.1 MD06G1019000.v1.1 MD06G1019100.v1.1 MD06G1019300.v1.1 MD06G1019800.v1.1 MD06G1020400.v1.1 MD06G1020700.v1.1 MD06G1020800.v1.1 MD06G1020900.v1.1 MD12G1038300.v1.1 MD12G1039400.v1.1
prunus_persica Prupe.5G017800_v2.0.a1 Prupe.5G017900_v2.0.a1 Prupe.5G018000_v2.0.a1 Prupe.5G018100_v2.0.a1 Prupe.5G018200_v2.0.a1 Prupe.8G000100_v2.0.a1
pyrus_communis pycom02g01330 pycom02g01390 pycom03g06420 pycom06g01300 pycom06g01320 pycom06g01340 pycom06g01500 pycom06g01510 pycom06g01520 pycom12g03300 pycom12g03320
rosa_chinensis RchiOBHm_Chr5g0051841 RchiOBHm_Chr6g0272991 RchiOBHm_Chr7g0213951 RchiOBHm_Chr7g0214051 RchiOBHm_Chr7g0214131 RchiOBHm_Chr7g0214161 RchiOBHm_Chr7g0214231 RchiOBHm_Chr7g0214321 RchiOBHm_Chr7g0214351 RchiOBHm_Chr7g0214391 RchiOBHm_Chr7g0214451 RchiOBHm_Chr7g0222591
rosa_laevigata RLG00000002044 RLG00000002744 RLG00000002751 RLG00000002752 RLG00000002755 RLG00000002756 RLG00000002757 RLG00000002758 RLG00000002762 RLG00000002763 RLG00000013652
rosa_multiflora Rmu_sc0000328.1_g000008 Rmu_sc0003764.1_g000001 Rmu_sc0003764.1_g000002 Rmu_sc0004199.1_g000004 Rmu_sc0004199.1_g000006 Rmu_sc0004199.1_g000014 Rmu_sc0004199.1_g000019 Rmu_sc0004199.1_g000022 Rmu_sc0005063.1_g000018 Rmu_sc0006422.1_g000030 Rmu_sc0006422.1_g000031 Rmu_sc0009579.1_g000011 Rmu_sc0009579.1_g000017 Rmu_sc0016182.1_g000005 Rmu_sc0016182.1_g000007 Rmu_sc0016279.1_g000002 Rmu_ssc0000387.1_g000031
rosa_roxburghii Rroxscaffold_1G00027390 Rroxscaffold_2G00146810 Rroxscaffold_3G00236600 Rroxscaffold_3G00236620 Rroxscaffold_3G00245350 Rroxscaffold_3G00245400 Rroxscaffold_3G00245440 Rroxscaffold_3G00245480 Rroxscaffold_3G00245560 Rroxscaffold_7G00195770
rosa_rugosa Rorug02G0047800 Rorug02G0047900 Rorug05G0276800 Rorug06G0071900 Rorug07G0145400 Rorug07G0145500 Rorug07G0145600 Rorug07G0145700 Rorug07G0145700 Rorug07G0145800 Rorug07G0211200
rosa_samantha Rh5BG359700 Rh6AG187600 Rh6DG181500 Rh7AG278000 Rh7AG278900 Rh7AG279800 Rh7AG279900 Rh7AG280100 Rh7AG280400 Rh7AG280700 Rh7AG281200 Rh7AG354300 Rh7AG354800 Rh7BG272300 Rh7BG272500 Rh7BG272600 Rh7BG272700 Rh7BG272800 Rh7BG273000 Rh7BG343200 Rh7CG297000 Rh7CG297900 Rh7CG298100 Rh7CG298800 Rh7CG299100 Rh7CG299300 Rh7CG299400 Rh7CG300000 Rh7CG300200 Rh7CG300600 Rh7CG371800 Rh7CG371900
rosa_wichuraiana Rw5G032880 Rw6G016270 Rw7G023930 Rw7G023980 Rw7G023990 Rw7G024000 Rw7G024010 Rw7G024020 Rw7G024030 Rw7G029800 Rw7G030090 Rw7G030140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 156, 396
AccB1I GGYRCC 2 cut(s) 42, 61
AciI CCGC 1 cut(s) 37
AclWI GGATC 4 cut(s) 130, 158, 179, 192
AcuI CTGAAG 1 cut(s) 344
AcyI GRCGYC 3 cut(s) 43, 62, 354
AfiI CCNNNNNNNGG 3 cut(s) 205, 245, 379
AjnI CCWGG 1 cut(s) 403
AjuI GAANNNNNNNTTGG 2 cut(s) 108, 140
AluBI AGCT 2 cut(s) 277, 388
AluI AGCT 2 cut(s) 277, 388
AlwI GGATC 4 cut(s) 130, 158, 179, 192
AoxI GGCC 1 cut(s) 72
Asp700I GAANNNNTTC 1 cut(s) 123
AspLEI GCGC 2 cut(s) 45, 64
AspS9I GGNCC 1 cut(s) 263
AsuHPI GGTGA 1 cut(s) 362
AvaII GGWCC 1 cut(s) 263
BamHI GGATCC 1 cut(s) 184
BanI GGYRCC 2 cut(s) 42, 61
BbsI GAAGAC 2 cut(s) 19, 116
BbvCI CCTCAGC 1 cut(s) 297
BccI CCATC 1 cut(s) 407
BceAI ACGGC 1 cut(s) 309
BciT130I CCWGG 1 cut(s) 405
BfaI CTAG 1 cut(s) 338
BfoI RGCGCY 2 cut(s) 46, 65
Bme1390I CCNGG 1 cut(s) 405
Bme18I GGWCC 1 cut(s) 263
BmgT120I GGNCC 1 cut(s) 263
BmiI GGNNCC 5 cut(s) 44, 63, 186, 264, 409
BmrFI CCNGG 1 cut(s) 405
BmsI GCATC 2 cut(s) 14, 313
BpiI GAAGAC 2 cut(s) 19, 116
Bpu10I CCTNAGC 2 cut(s) 254, 297
Bsa29I ATCGAT 1 cut(s) 108
BsaHI GRCGYC 3 cut(s) 43, 62, 354
BsaWI WCCGGW 1 cut(s) 270
BsaXI ACNNNNNCTCC 2 cut(s) 152, 182
Bsc4I CCNNNNNNNGG 3 cut(s) 205, 245, 379
Bse118I RCCGGY 2 cut(s) 64, 245
Bse1I ACTGG 1 cut(s) 60
BseBI CCWGG 1 cut(s) 405
BseCI ATCGAT 1 cut(s) 108
BseLI CCNNNNNNNGG 3 cut(s) 205, 245, 379
BseMII CTCAG 2 cut(s) 268, 288
BseNI ACTGG 1 cut(s) 60
BseRI GAGGAG 1 cut(s) 398
BshFI GGCC 1 cut(s) 74
BshNI GGYRCC 2 cut(s) 42, 61
BshVI ATCGAT 1 cut(s) 108
BsiSI CCGG 3 cut(s) 65, 246, 271
BslFI GGGAC 1 cut(s) 276
BslI CCNNNNNNNGG 3 cut(s) 205, 245, 379
BsmFI GGGAC 1 cut(s) 276
BsmI GAATGC 1 cut(s) 293
BsnI GGCC 1 cut(s) 74
Bsp143I GATC 3 cut(s) 135, 163, 184
BspACI CCGC 1 cut(s) 37
BspANI GGCC 1 cut(s) 74
BspCNI CTCAG 2 cut(s) 267, 289
BspDI ATCGAT 1 cut(s) 108
BspLI GGNNCC 5 cut(s) 44, 63, 186, 264, 409
BspPI GGATC 4 cut(s) 130, 158, 179, 192
BspT107I GGYRCC 2 cut(s) 42, 61
BsrFI RCCGGY 2 cut(s) 64, 245
BsrI ACTGG 1 cut(s) 60
BssAI RCCGGY 2 cut(s) 64, 245
BssMI GATC 3 cut(s) 135, 163, 184
BssNI GRCGYC 3 cut(s) 43, 62, 354
Bst2UI CCWGG 1 cut(s) 405
Bst4CI ACNGT 4 cut(s) 34, 150, 283, 369
BstACI GRCGYC 3 cut(s) 43, 62, 354
BstC8I GCNNGC 1 cut(s) 66
BstDEI CTNAG 4 cut(s) 200, 223, 254, 297
BstENI CCTNNNNNAGG 1 cut(s) 203
BstH2I RGCGCY 2 cut(s) 46, 65
BstHHI GCGC 2 cut(s) 45, 64
BstKTI GATC 3 cut(s) 138, 166, 187
BstMBI GATC 3 cut(s) 135, 163, 184
BstMWI GCNNNNNNNGC 1 cut(s) 445
BstNI CCWGG 1 cut(s) 405
BstNSI RCATGY 1 cut(s) 197
BstSCI CCNGG 1 cut(s) 403
BstV2I GAAGAC 2 cut(s) 19, 116
BstX2I RGATCY 2 cut(s) 135, 184
BstYI RGATCY 2 cut(s) 135, 184
Bsu15I ATCGAT 1 cut(s) 108
BsuRI GGCC 1 cut(s) 74
BsuTUI ATCGAT 1 cut(s) 108
BtsIMutI CAGTG 1 cut(s) 39
Cac8I GCNNGC 1 cut(s) 66
CfoI GCGC 2 cut(s) 45, 64
Cfr10I RCCGGY 2 cut(s) 64, 245
Cfr13I GGNCC 1 cut(s) 263
ClaI ATCGAT 1 cut(s) 108
CseI GACGC 2 cut(s) 362, 437
CviAII CATG 3 cut(s) 172, 194, 307
CviJI RGCY 7 cut(s) 74, 253, 277, 296, 320, 364, 388
CviKI_1 RGCY 7 cut(s) 74, 253, 277, 296, 320, 364, 388
DdeI CTNAG 4 cut(s) 200, 223, 254, 297
DinI GGCGCC 2 cut(s) 44, 63
DpnI GATC 3 cut(s) 137, 165, 186
DpnII GATC 3 cut(s) 135, 163, 184
Eco32I GATATC 1 cut(s) 106
Eco47I GGWCC 1 cut(s) 263
Eco57I CTGAAG 1 cut(s) 344
EcoNI CCTNNNNNAGG 1 cut(s) 203
EcoO109I RGGNCCY 1 cut(s) 263
EcoRII CCWGG 1 cut(s) 403
EcoRV GATATC 1 cut(s) 106
EgeI GGCGCC 2 cut(s) 44, 63
EheI GGCGCC 2 cut(s) 44, 63
FaeI CATG 3 cut(s) 175, 197, 310
FaiI YATR 7 cut(s) 82, 84, 156, 173, 195, 308, 396
FalI AAGNNNNNCTT 2 cut(s) 108, 140
FaqI GGGAC 1 cut(s) 276
FatI CATG 3 cut(s) 171, 193, 306
FauNDI CATATG 1 cut(s) 82
FspBI CTAG 1 cut(s) 338
GlaI GCGC 2 cut(s) 44, 63
HaeII RGCGCY 2 cut(s) 46, 65
HaeIII GGCC 1 cut(s) 74
HapII CCGG 3 cut(s) 65, 246, 271
HgaI GACGC 2 cut(s) 362, 437
HhaI GCGC 2 cut(s) 45, 64
Hin1I GRCGYC 3 cut(s) 43, 62, 354
Hin1II CATG 3 cut(s) 175, 197, 310
Hin6I GCGC 2 cut(s) 43, 62
HinP1I GCGC 2 cut(s) 43, 62
HpaII CCGG 3 cut(s) 65, 246, 271
HphI GGTGA 1 cut(s) 362
Hpy188I TCNGA 3 cut(s) 103, 135, 412
Hpy99I CGWCG 2 cut(s) 332, 453
HpyAV CCTTC 3 cut(s) 113, 174, 368
HpyCH4III ACNGT 4 cut(s) 34, 150, 283, 369
HpyCH4IV ACGT 1 cut(s) 330
HpyCH4V TGCA 4 cut(s) 175, 193, 215, 291
HpyF10VI GCNNNNNNNGC 1 cut(s) 445
HpyF3I CTNAG 4 cut(s) 200, 223, 254, 297
HpySE526I ACGT 1 cut(s) 330
Hsp92I GRCGYC 3 cut(s) 43, 62, 354
Hsp92II CATG 3 cut(s) 175, 197, 310
HspAI GCGC 2 cut(s) 43, 62
KasI GGCGCC 2 cut(s) 42, 61
KroI GCCGGC 1 cut(s) 64
KroNI GCCGGC 1 cut(s) 66
Kzo9I GATC 3 cut(s) 135, 163, 184
LmnI GCTCC 1 cut(s) 385
LweI GCATC 2 cut(s) 14, 313
MaeI CTAG 1 cut(s) 338
MaeII ACGT 1 cut(s) 330
MaeIII GTNAC 2 cut(s) 331, 350
MalI GATC 3 cut(s) 137, 165, 186
MboI GATC 3 cut(s) 135, 163, 184
MboII GAAGA 2 cut(s) 19, 116
MfeI CAATTG 1 cut(s) 210
MflI RGATCY 2 cut(s) 135, 184
MluCI AATT 5 cut(s) 16, 210, 344, 424, 441
Mly113I GGCGCC 2 cut(s) 43, 62
MnlI CCTC 8 cut(s) 33, 178, 199, 253, 292, 310, 376, 465
MroNI GCCGGC 1 cut(s) 64
MroXI GAANNNNTTC 1 cut(s) 123
MseI TTAA 2 cut(s) 423, 463
MspI CCGG 3 cut(s) 65, 246, 271
MspR9I CCNGG 1 cut(s) 405
MunI CAATTG 1 cut(s) 210
Mva1269I GAATGC 1 cut(s) 293
MvaI CCWGG 1 cut(s) 405
MwoI GCNNNNNNNGC 1 cut(s) 445
NaeI GCCGGC 1 cut(s) 66
NarI GGCGCC 2 cut(s) 43, 62
NdeI CATATG 1 cut(s) 82
NdeII GATC 3 cut(s) 135, 163, 184
NgoMIV GCCGGC 1 cut(s) 64
NlaIII CATG 3 cut(s) 175, 197, 310
NlaIV GGNNCC 5 cut(s) 44, 63, 186, 264, 409
NmuCI GTSAC 1 cut(s) 350
NspI RCATGY 1 cut(s) 197
PctI GAATGC 1 cut(s) 293
PdiI GCCGGC 1 cut(s) 66
PdmI GAANNNNTTC 1 cut(s) 123
PluTI GGCGCC 2 cut(s) 46, 65
PpuMI RGGWCCY 1 cut(s) 263
PsiI TTATAA 2 cut(s) 156, 396
Psp5II RGGWCCY 1 cut(s) 263
Psp6I CCWGG 1 cut(s) 403
PspGI CCWGG 1 cut(s) 403
PspN4I GGNNCC 5 cut(s) 44, 63, 186, 264, 409
PspPI GGNCC 1 cut(s) 263
PspPPI RGGWCCY 1 cut(s) 263
PsuI RGATCY 2 cut(s) 135, 184
SaqAI TTAA 2 cut(s) 423, 463
Sau3AI GATC 3 cut(s) 135, 163, 184
Sau96I GGNCC 1 cut(s) 263
ScrFI CCNGG 1 cut(s) 405
SetI ASST 6 cut(s) 124, 224, 268, 279, 333, 390
SfaNI GCATC 2 cut(s) 14, 313
SfoI GGCGCC 2 cut(s) 44, 63
SinI GGWCC 1 cut(s) 263
Sse9I AATT 5 cut(s) 16, 210, 344, 424, 441
SsiI CCGC 1 cut(s) 37
SspDI GGCGCC 2 cut(s) 42, 61
SspMI CTAG 1 cut(s) 338
StyD4I CCNGG 1 cut(s) 403
TaaI ACNGT 4 cut(s) 34, 150, 283, 369
TaiI ACGT 1 cut(s) 333
TaqI TCGA 2 cut(s) 91, 108
TasI AATT 5 cut(s) 16, 210, 344, 424, 441
Tru1I TTAA 2 cut(s) 423, 463
Tru9I TTAA 2 cut(s) 423, 463
TscAI CASTG 1 cut(s) 39
TseFI GTSAC 1 cut(s) 350
Tsp45I GTSAC 1 cut(s) 350
TspDTI ATGAA 1 cut(s) 301
TspGWI ACGGA 1 cut(s) 447
TspRI CASTG 1 cut(s) 39
VpaK11BI GGWCC 1 cut(s) 263
XagI CCTNNNNNAGG 1 cut(s) 203
XceI RCATGY 1 cut(s) 197
XmnI GAANNNNTTC 1 cut(s) 123
XspI CTAG 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.