Rmu_sc0003764.1_g000002

Benzyl alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003764.1
OG0000190
Physical Location & Seq
Forward (+)
2536 .. 3126
591 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003764.1_g000002.1.cds

Sequence Viewer

Length: 591 bp
atggtgcaaaaatctttctactttggtcccaaggagataagggccatgaaaaagcatcttccacctcacctttccaattgctctacattcgaccttataacatcctgtttgtggaaatgccgcacaattgcactagaacttaatccagaacaggttgttcgggtttcatgcatagtcaatgcacgtgggaagcgcaacaatctccgtcttcctttgggttactacggcaatgcattcgcatacccagctgctatttcgggagtgaaacaattgtgtgaaagtccgttgggatatgcactggagttggtgatgaaggctaaagatgaaattaatgaagagtacatgagatcagtggccgatcatatggtcataagaggacgtcctctatatacattgaacgggaacttcatagtttcggataatacgcgtactggctttggagaggtcaacttggggtggggaaagccagcattttctggacctaccaaggccttgaaccttattagtttctatgtccagaacaaaacggaaaaagaggacgggattttggtgccagtgtgcttgccattatggactatggcgagattgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

196

Amino Acids

22.02

Weight (kDa)

9.25

Isoelectric Point (pI)

44.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000190)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03480 AT5G17540
fragaria_vesca FvH4_2g12510 FvH4_3g38880 FvH4_3g40890 FvH4_5g24240 FvH4_5g24250 FvH4_5g24270 FvH4_5g24273 FvH4_6g05391 FvH4_6g05392
malus_domestica MD00G1201900.v1.1 MD00G1202100.v1.1 MD02G1001400.v1.1 MD02G1013900.v1.1 MD02G1014800.v1.1 MD02G1015000.v1.1 MD02G1015200.v1.1 MD03G1080200.v1.1 MD06G1016200.v1.1 MD06G1016500.v1.1 MD06G1017700.v1.1 MD06G1018100.v1.1 MD06G1018200.v1.1 MD06G1018400.v1.1 MD06G1018700.v1.1 MD06G1018800.v1.1 MD06G1019000.v1.1 MD06G1019100.v1.1 MD06G1019300.v1.1 MD06G1019800.v1.1 MD06G1020400.v1.1 MD06G1020700.v1.1 MD06G1020800.v1.1 MD06G1020900.v1.1 MD12G1038300.v1.1 MD12G1039400.v1.1
prunus_persica Prupe.5G017800_v2.0.a1 Prupe.5G017900_v2.0.a1 Prupe.5G018000_v2.0.a1 Prupe.5G018100_v2.0.a1 Prupe.5G018200_v2.0.a1 Prupe.8G000100_v2.0.a1
pyrus_communis pycom02g01330 pycom02g01390 pycom03g06420 pycom06g01300 pycom06g01320 pycom06g01340 pycom06g01500 pycom06g01510 pycom06g01520 pycom12g03300 pycom12g03320
rosa_chinensis RchiOBHm_Chr5g0051841 RchiOBHm_Chr6g0272991 RchiOBHm_Chr7g0213951 RchiOBHm_Chr7g0214051 RchiOBHm_Chr7g0214131 RchiOBHm_Chr7g0214161 RchiOBHm_Chr7g0214231 RchiOBHm_Chr7g0214321 RchiOBHm_Chr7g0214351 RchiOBHm_Chr7g0214391 RchiOBHm_Chr7g0214451 RchiOBHm_Chr7g0222591
rosa_laevigata RLG00000002044 RLG00000002744 RLG00000002751 RLG00000002752 RLG00000002755 RLG00000002756 RLG00000002757 RLG00000002758 RLG00000002762 RLG00000002763 RLG00000013652
rosa_multiflora Rmu_sc0000328.1_g000008 Rmu_sc0003764.1_g000001 Rmu_sc0003764.1_g000002 Rmu_sc0004199.1_g000004 Rmu_sc0004199.1_g000006 Rmu_sc0004199.1_g000014 Rmu_sc0004199.1_g000019 Rmu_sc0004199.1_g000022 Rmu_sc0005063.1_g000018 Rmu_sc0006422.1_g000030 Rmu_sc0006422.1_g000031 Rmu_sc0009579.1_g000011 Rmu_sc0009579.1_g000017 Rmu_sc0016182.1_g000005 Rmu_sc0016182.1_g000007 Rmu_sc0016279.1_g000002 Rmu_ssc0000387.1_g000031
rosa_roxburghii Rroxscaffold_1G00027390 Rroxscaffold_2G00146810 Rroxscaffold_3G00236600 Rroxscaffold_3G00236620 Rroxscaffold_3G00245350 Rroxscaffold_3G00245400 Rroxscaffold_3G00245440 Rroxscaffold_3G00245480 Rroxscaffold_3G00245560 Rroxscaffold_7G00195770
rosa_rugosa Rorug02G0047800 Rorug02G0047900 Rorug05G0276800 Rorug06G0071900 Rorug07G0145400 Rorug07G0145500 Rorug07G0145600 Rorug07G0145700 Rorug07G0145700 Rorug07G0145800 Rorug07G0211200
rosa_samantha Rh5BG359700 Rh6AG187600 Rh6DG181500 Rh7AG278000 Rh7AG278900 Rh7AG279800 Rh7AG279900 Rh7AG280100 Rh7AG280400 Rh7AG280700 Rh7AG281200 Rh7AG354300 Rh7AG354800 Rh7BG272300 Rh7BG272500 Rh7BG272600 Rh7BG272700 Rh7BG272800 Rh7BG273000 Rh7BG343200 Rh7CG297000 Rh7CG297900 Rh7CG298100 Rh7CG298800 Rh7CG299100 Rh7CG299300 Rh7CG299400 Rh7CG300000 Rh7CG300200 Rh7CG300600 Rh7CG371800 Rh7CG371900
rosa_wichuraiana Rw5G032880 Rw6G016270 Rw7G023930 Rw7G023980 Rw7G023990 Rw7G024000 Rw7G024010 Rw7G024020 Rw7G024030 Rw7G029800 Rw7G030090 Rw7G030140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 98
AatII GACGTC 1 cut(s) 382
AccB1I GGYRCC 1 cut(s) 550
AccII CGCG 1 cut(s) 427
AciI CCGC 1 cut(s) 121
AcoI YGGCCR 1 cut(s) 354
AcvI CACGTG 1 cut(s) 185
AcyI GRCGYC 1 cut(s) 379
AfaI GTAC 2 cut(s) 341, 430
AfiI CCNNNNNNNGG 1 cut(s) 111
AflIII ACRYGT 1 cut(s) 425
AgsI TTSAA 2 cut(s) 397, 496
AluBI AGCT 1 cut(s) 248
AluI AGCT 1 cut(s) 248
AoxI GGCC 3 cut(s) 42, 354, 489
ApeKI GCWGC 1 cut(s) 248
AseI ATTAAT 1 cut(s) 330
AspLEI GCGC 1 cut(s) 195
AspS9I GGNCC 3 cut(s) 26, 42, 479
AsuHPI GGTGA 2 cut(s) 59, 319
AvaII GGWCC 2 cut(s) 26, 479
BanI GGYRCC 1 cut(s) 550
BbrPI CACGTG 1 cut(s) 185
BbsI GAAGAC 1 cut(s) 200
BbvI GCAGC 1 cut(s) 235
BceAI ACGGC 1 cut(s) 241
BcgI CGANNNNNNTGC 2 cut(s) 217, 251
BfaI CTAG 1 cut(s) 134
BisI GCNGC 2 cut(s) 121, 249
BlsI GCNGC 2 cut(s) 122, 250
Bme18I GGWCC 2 cut(s) 26, 479
BmgT120I GGNCC 3 cut(s) 26, 42, 479
BmiI GGNNCC 2 cut(s) 28, 552
BmsI GCATC 1 cut(s) 64
BpiI GAAGAC 1 cut(s) 200
BpmI CTGGAG 1 cut(s) 320
BsaAI YACGTR 1 cut(s) 185
BsaHI GRCGYC 1 cut(s) 379
BsaJI CCNNGG 2 cut(s) 30, 486
Bsc4I CCNNNNNNNGG 1 cut(s) 111
Bse1I ACTGG 3 cut(s) 303, 436, 554
Bse3DI GCAATG 1 cut(s) 235
BseDI CCNNGG 2 cut(s) 30, 486
BseGI GGATG 1 cut(s) 101
BseLI CCNNNNNNNGG 1 cut(s) 111
BseMI GCAATG 1 cut(s) 235
BseNI ACTGG 3 cut(s) 303, 436, 554
BseXI GCAGC 1 cut(s) 235
BseYI CCCAGC 1 cut(s) 244
Bsh1236I CGCG 1 cut(s) 427
BshFI GGCC 3 cut(s) 44, 356, 491
BshNI GGYRCC 1 cut(s) 550
BslFI GGGAC 1 cut(s) 12
BslI CCNNNNNNNGG 1 cut(s) 111
BsmFI GGGAC 1 cut(s) 12
BsmI GAATGC 1 cut(s) 233
BsnI GGCC 3 cut(s) 44, 356, 491
Bsp143I GATC 2 cut(s) 347, 358
BspACI CCGC 1 cut(s) 121
BspANI GGCC 3 cut(s) 44, 356, 491
BspFNI CGCG 1 cut(s) 427
BspLI GGNNCC 2 cut(s) 28, 552
BspT107I GGYRCC 1 cut(s) 550
BsrDI GCAATG 1 cut(s) 235
BsrI ACTGG 3 cut(s) 303, 436, 554
BssECI CCNNGG 2 cut(s) 30, 486
BssMI GATC 2 cut(s) 347, 358
BssNI GRCGYC 1 cut(s) 379
BssT1I CCWWGG 2 cut(s) 30, 486
Bst6I CTCTTC 1 cut(s) 330
BstACI GRCGYC 1 cut(s) 379
BstBAI YACGTR 1 cut(s) 185
BstC8I GCNNGC 2 cut(s) 468, 563
BstF5I GGATG 1 cut(s) 101
BstFNI CGCG 1 cut(s) 427
BstHHI GCGC 1 cut(s) 195
BstKTI GATC 2 cut(s) 350, 361
BstMBI GATC 2 cut(s) 347, 358
BstMWI GCNNNNNNNGC 1 cut(s) 245
BstUI CGCG 1 cut(s) 427
BstV1I GCAGC 1 cut(s) 235
BstV2I GAAGAC 1 cut(s) 200
BsuRI GGCC 3 cut(s) 44, 356, 491
BtsCI GGATG 1 cut(s) 101
BtsIMutI CAGTG 3 cut(s) 296, 357, 561
Cac8I GCNNGC 2 cut(s) 468, 563
CfoI GCGC 1 cut(s) 195
Cfr13I GGNCC 3 cut(s) 26, 42, 479
Csp6I GTAC 2 cut(s) 340, 429
CspCI CAANNNNNGTGG 2 cut(s) 166, 201
CviAII CATG 3 cut(s) 46, 168, 343
CviJI RGCY 7 cut(s) 44, 248, 317, 356, 435, 466, 491
CviKI_1 RGCY 7 cut(s) 44, 248, 317, 356, 435, 466, 491
CviQI GTAC 2 cut(s) 340, 429
DpnI GATC 2 cut(s) 349, 360
DpnII GATC 2 cut(s) 347, 358
EaeI YGGCCR 1 cut(s) 354
Eam1104I CTCTTC 1 cut(s) 330
EarI CTCTTC 1 cut(s) 330
Eco130I CCWWGG 2 cut(s) 30, 486
Eco147I AGGCCT 1 cut(s) 491
Eco47I GGWCC 2 cut(s) 26, 479
Eco72I CACGTG 1 cut(s) 185
EcoT14I CCWWGG 2 cut(s) 30, 486
EcoT22I ATGCAT 2 cut(s) 173, 235
ErhI CCWWGG 2 cut(s) 30, 486
FaeI CATG 3 cut(s) 49, 171, 346
FaqI GGGAC 1 cut(s) 12
FatI CATG 3 cut(s) 45, 167, 342
FauNDI CATATG 1 cut(s) 363
Fnu4HI GCNGC 2 cut(s) 121, 249
FokI GGATG 1 cut(s) 88
Fsp4HI GCNGC 2 cut(s) 121, 249
FspBI CTAG 1 cut(s) 134
GlaI GCGC 1 cut(s) 194
GluI GCNGC 2 cut(s) 121, 249
GsaI CCCAGC 1 cut(s) 248
GsuI CTGGAG 1 cut(s) 320
HaeIII GGCC 3 cut(s) 44, 356, 491
HhaI GCGC 1 cut(s) 195
Hin1I GRCGYC 1 cut(s) 379
Hin1II CATG 3 cut(s) 49, 171, 346
Hin6I GCGC 1 cut(s) 193
HinP1I GCGC 1 cut(s) 193
HincII GTYRAC 1 cut(s) 448
HindII GTYRAC 1 cut(s) 448
HphI GGTGA 2 cut(s) 59, 319
Hpy166II GTNNAC 1 cut(s) 448
Hpy188I TCNGA 1 cut(s) 418
Hpy188III TCNNGA 4 cut(s) 146, 258, 477, 517
Hpy8I GTNNAC 1 cut(s) 448
HpyAV CCTTC 1 cut(s) 307
HpyCH4IV ACGT 2 cut(s) 184, 379
HpyCH4V TGCA 6 cut(s) 7, 131, 171, 182, 233, 296
HpyF10VI GCNNNNNNNGC 1 cut(s) 245
HpySE526I ACGT 2 cut(s) 184, 379
Hsp92I GRCGYC 1 cut(s) 379
Hsp92II CATG 3 cut(s) 49, 171, 346
HspAI GCGC 1 cut(s) 193
Kzo9I GATC 2 cut(s) 347, 358
Lsp1109I GCAGC 1 cut(s) 235
LweI GCATC 1 cut(s) 64
MaeI CTAG 1 cut(s) 134
MaeII ACGT 2 cut(s) 184, 379
MaeIII GTNAC 1 cut(s) 218
MalI GATC 2 cut(s) 349, 360
MboI GATC 2 cut(s) 347, 358
MboII GAAGA 3 cut(s) 50, 200, 347
MfeI CAATTG 3 cut(s) 76, 126, 269
MluCI AATT 4 cut(s) 76, 126, 269, 327
MluI ACGCGT 1 cut(s) 425
MnlI CCTC 5 cut(s) 75, 368, 393, 436, 529
Mph1103I ATGCAT 2 cut(s) 173, 235
MseI TTAA 2 cut(s) 141, 330
MspA1I CMGCKG 1 cut(s) 248
MunI CAATTG 3 cut(s) 76, 126, 269
Mva1269I GAATGC 1 cut(s) 233
MvnI CGCG 1 cut(s) 427
MwoI GCNNNNNNNGC 1 cut(s) 245
NdeI CATATG 1 cut(s) 363
NdeII GATC 2 cut(s) 347, 358
NlaIII CATG 3 cut(s) 49, 171, 346
NlaIV GGNNCC 2 cut(s) 28, 552
NsiI ATGCAT 2 cut(s) 173, 235
PceI AGGCCT 1 cut(s) 491
PctI GAATGC 1 cut(s) 233
PkrI GCNGC 2 cut(s) 122, 250
PmaCI CACGTG 1 cut(s) 185
PmlI CACGTG 1 cut(s) 185
Ppu21I YACGTR 1 cut(s) 185
PshBI ATTAAT 1 cut(s) 330
PsiI TTATAA 1 cut(s) 98
PspCI CACGTG 1 cut(s) 185
PspFI CCCAGC 1 cut(s) 244
PspN4I GGNNCC 2 cut(s) 28, 552
PspPI GGNCC 3 cut(s) 26, 42, 479
PvuII CAGCTG 1 cut(s) 248
RsaI GTAC 2 cut(s) 341, 430
RsaNI GTAC 2 cut(s) 340, 429
SaqAI TTAA 2 cut(s) 141, 330
SatI GCNGC 2 cut(s) 121, 249
Sau3AI GATC 2 cut(s) 347, 358
Sau96I GGNCC 3 cut(s) 26, 42, 479
SfaNI GCATC 1 cut(s) 64
SinI GGWCC 2 cut(s) 26, 479
Sse9I AATT 4 cut(s) 76, 126, 269, 327
SseBI AGGCCT 1 cut(s) 491
SsiI CCGC 1 cut(s) 121
SspMI CTAG 1 cut(s) 134
StuI AGGCCT 1 cut(s) 491
StyI CCWWGG 2 cut(s) 30, 486
TaiI ACGT 2 cut(s) 187, 382
TaqI TCGA 1 cut(s) 90
TasI AATT 4 cut(s) 76, 126, 269, 327
TatI WGTACW 1 cut(s) 339
TauI GCSGC 1 cut(s) 123
Tru1I TTAA 2 cut(s) 141, 330
Tru9I TTAA 2 cut(s) 141, 330
TscAI CASTG 3 cut(s) 303, 357, 561
TseI GCWGC 1 cut(s) 248
TspDTI ATGAA 6 cut(s) 62, 156, 326, 339, 348, 397
TspGWI ACGGA 3 cut(s) 194, 273, 542
TspRI CASTG 3 cut(s) 303, 357, 561
VpaK11BI GGWCC 2 cut(s) 26, 479
VspI ATTAAT 1 cut(s) 330
XspI CTAG 1 cut(s) 134
ZraI GACGTC 1 cut(s) 380
Zsp2I ATGCAT 2 cut(s) 173, 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.