Rh7BG272600

Benzyl alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000190
Physical Location & Seq
Reverse (-)
25086952 .. 25087314
363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG272600.1

Sequence Viewer

Length: 363 bp
ATGAATGAAGAGTACATGAGATCAGTGGCAGATCTTATGGTCATAAGAGGACGGCCTCCATTTACATTGACCGGGAACTTCATAGTTTCAGATAATCGACGTACTGGCCTTGGAGATGTCGACTTGGGGTGGGGAAAGCCAGCATTTTCTGGACCTGCCAAGGCCTTGAACCTTATTAGTTTCTATGTTCAGCAAAAAAAGGAAAAAGAGGACGGGATTTTGGTGCCAGTGTGCTTGCCATCGTTGAGTATGGTGAGATTTCAGCAGGAACTCGAGAAGATGACGTCGTCGGAGATAGTGGAAAATATAAATAACACTAAATCTGCTGATATTAATGTTGTAAGGATAATTCCTCGGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

120

Amino Acids

13.46

Weight (kDa)

7.85

Isoelectric Point (pI)

50.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 23 - 94 1.9e-10 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000190)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03480 AT5G17540
fragaria_vesca FvH4_2g12510 FvH4_3g38880 FvH4_3g40890 FvH4_5g24240 FvH4_5g24250 FvH4_5g24270 FvH4_5g24273 FvH4_6g05391 FvH4_6g05392
malus_domestica MD00G1201900.v1.1 MD00G1202100.v1.1 MD02G1001400.v1.1 MD02G1013900.v1.1 MD02G1014800.v1.1 MD02G1015000.v1.1 MD02G1015200.v1.1 MD03G1080200.v1.1 MD06G1016200.v1.1 MD06G1016500.v1.1 MD06G1017700.v1.1 MD06G1018100.v1.1 MD06G1018200.v1.1 MD06G1018400.v1.1 MD06G1018700.v1.1 MD06G1018800.v1.1 MD06G1019000.v1.1 MD06G1019100.v1.1 MD06G1019300.v1.1 MD06G1019800.v1.1 MD06G1020400.v1.1 MD06G1020700.v1.1 MD06G1020800.v1.1 MD06G1020900.v1.1 MD12G1038300.v1.1 MD12G1039400.v1.1
prunus_persica Prupe.5G017800_v2.0.a1 Prupe.5G017900_v2.0.a1 Prupe.5G018000_v2.0.a1 Prupe.5G018100_v2.0.a1 Prupe.5G018200_v2.0.a1 Prupe.8G000100_v2.0.a1
pyrus_communis pycom02g01330 pycom02g01390 pycom03g06420 pycom06g01300 pycom06g01320 pycom06g01340 pycom06g01500 pycom06g01510 pycom06g01520 pycom12g03300 pycom12g03320
rosa_chinensis RchiOBHm_Chr5g0051841 RchiOBHm_Chr6g0272991 RchiOBHm_Chr7g0213951 RchiOBHm_Chr7g0214051 RchiOBHm_Chr7g0214131 RchiOBHm_Chr7g0214161 RchiOBHm_Chr7g0214231 RchiOBHm_Chr7g0214321 RchiOBHm_Chr7g0214351 RchiOBHm_Chr7g0214391 RchiOBHm_Chr7g0214451 RchiOBHm_Chr7g0222591
rosa_laevigata RLG00000002044 RLG00000002744 RLG00000002751 RLG00000002752 RLG00000002755 RLG00000002756 RLG00000002757 RLG00000002758 RLG00000002762 RLG00000002763 RLG00000013652
rosa_multiflora Rmu_sc0000328.1_g000008 Rmu_sc0003764.1_g000001 Rmu_sc0003764.1_g000002 Rmu_sc0004199.1_g000004 Rmu_sc0004199.1_g000006 Rmu_sc0004199.1_g000014 Rmu_sc0004199.1_g000019 Rmu_sc0004199.1_g000022 Rmu_sc0005063.1_g000018 Rmu_sc0006422.1_g000030 Rmu_sc0006422.1_g000031 Rmu_sc0009579.1_g000011 Rmu_sc0009579.1_g000017 Rmu_sc0016182.1_g000005 Rmu_sc0016182.1_g000007 Rmu_sc0016279.1_g000002 Rmu_ssc0000387.1_g000031
rosa_roxburghii Rroxscaffold_1G00027390 Rroxscaffold_2G00146810 Rroxscaffold_3G00236600 Rroxscaffold_3G00236620 Rroxscaffold_3G00245350 Rroxscaffold_3G00245400 Rroxscaffold_3G00245440 Rroxscaffold_3G00245480 Rroxscaffold_3G00245560 Rroxscaffold_7G00195770
rosa_rugosa Rorug02G0047800 Rorug02G0047900 Rorug05G0276800 Rorug06G0071900 Rorug07G0145400 Rorug07G0145500 Rorug07G0145600 Rorug07G0145700 Rorug07G0145700 Rorug07G0145800 Rorug07G0211200
rosa_samantha Rh5BG359700 Rh6AG187600 Rh6DG181500 Rh7AG278000 Rh7AG278900 Rh7AG279800 Rh7AG279900 Rh7AG280100 Rh7AG280400 Rh7AG280700 Rh7AG281200 Rh7AG354300 Rh7AG354800 Rh7BG272300 Rh7BG272500 Rh7BG272600 Rh7BG272700 Rh7BG272800 Rh7BG273000 Rh7BG343200 Rh7CG297000 Rh7CG297900 Rh7CG298100 Rh7CG298800 Rh7CG299100 Rh7CG299300 Rh7CG299400 Rh7CG300000 Rh7CG300200 Rh7CG300600 Rh7CG371800 Rh7CG371900
rosa_wichuraiana Rw5G032880 Rw6G016270 Rw7G023930 Rw7G023980 Rw7G023990 Rw7G024000 Rw7G024010 Rw7G024020 Rw7G024030 Rw7G029800 Rw7G030090 Rw7G030140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 287
Acc36I ACCTGC 1 cut(s) 163
AccB1I GGYRCC 1 cut(s) 223
AccI GTMKAC 1 cut(s) 120
AcyI GRCGYC 1 cut(s) 284
AfaI GTAC 2 cut(s) 14, 103
AgsI TTSAA 1 cut(s) 169
Ama87I CYCGRG 1 cut(s) 272
AoxI GGCC 3 cut(s) 53, 106, 162
AseI ATTAAT 1 cut(s) 333
AspS9I GGNCC 1 cut(s) 152
AsuC2I CCSGG 1 cut(s) 73
AsuHPI GGTGA 1 cut(s) 265
AvaI CYCGRG 1 cut(s) 272
AvaII GGWCC 1 cut(s) 152
BanI GGYRCC 1 cut(s) 223
BccI CCATC 1 cut(s) 247
BceAI ACGGC 1 cut(s) 68
BcnI CCSGG 1 cut(s) 73
BfuAI ACCTGC 1 cut(s) 163
BglII AGATCT 1 cut(s) 31
Bme1390I CCNGG 1 cut(s) 73
Bme18I GGWCC 1 cut(s) 152
BmeT110I CYCGRG 1 cut(s) 272
BmgT120I GGNCC 1 cut(s) 152
BmiI GGNNCC 1 cut(s) 225
BmrFI CCNGG 1 cut(s) 73
BpuMI CCSGG 1 cut(s) 73
BsaHI GRCGYC 1 cut(s) 284
BsaJI CCNNGG 3 cut(s) 109, 159, 353
Bse1I ACTGG 2 cut(s) 109, 227
BseDI CCNNGG 3 cut(s) 109, 159, 353
BseNI ACTGG 2 cut(s) 109, 227
BshFI GGCC 3 cut(s) 55, 108, 164
BshNI GGYRCC 1 cut(s) 223
BsiHKCI CYCGRG 1 cut(s) 272
BsiSI CCGG 1 cut(s) 72
BsnI GGCC 3 cut(s) 55, 108, 164
BsoBI CYCGRG 1 cut(s) 272
Bsp143I GATC 2 cut(s) 20, 31
BspANI GGCC 3 cut(s) 55, 108, 164
BspLI GGNNCC 1 cut(s) 225
BspMI ACCTGC 1 cut(s) 163
BspT107I GGYRCC 1 cut(s) 223
BsrI ACTGG 2 cut(s) 109, 227
BssECI CCNNGG 3 cut(s) 109, 159, 353
BssMI GATC 2 cut(s) 20, 31
BssNI GRCGYC 1 cut(s) 284
BssT1I CCWWGG 2 cut(s) 109, 159
Bst6I CTCTTC 1 cut(s) 3
BstACI GRCGYC 1 cut(s) 284
BstC8I GCNNGC 2 cut(s) 141, 236
BstKTI GATC 2 cut(s) 23, 34
BstMBI GATC 2 cut(s) 20, 31
BstSCI CCNGG 1 cut(s) 71
BstX2I RGATCY 1 cut(s) 31
BstYI RGATCY 1 cut(s) 31
BsuRI GGCC 3 cut(s) 55, 108, 164
BtsIMutI CAGTG 2 cut(s) 30, 234
BveI ACCTGC 1 cut(s) 163
Cac8I GCNNGC 2 cut(s) 141, 236
Cfr13I GGNCC 1 cut(s) 152
Csp6I GTAC 2 cut(s) 13, 102
CviAII CATG 1 cut(s) 16
CviJI RGCY 4 cut(s) 55, 108, 139, 164
CviKI_1 RGCY 4 cut(s) 55, 108, 139, 164
CviQI GTAC 2 cut(s) 13, 102
DpnI GATC 2 cut(s) 22, 33
DpnII GATC 2 cut(s) 20, 31
Eam1104I CTCTTC 1 cut(s) 3
EarI CTCTTC 1 cut(s) 3
Eco130I CCWWGG 2 cut(s) 109, 159
Eco147I AGGCCT 1 cut(s) 164
Eco47I GGWCC 1 cut(s) 152
Eco88I CYCGRG 1 cut(s) 272
EcoT14I CCWWGG 2 cut(s) 109, 159
ErhI CCWWGG 2 cut(s) 109, 159
FaeI CATG 1 cut(s) 19
FaiI YATR 7 cut(s) 17, 38, 44, 83, 186, 251, 308
FatI CATG 1 cut(s) 15
FblI GTMKAC 1 cut(s) 120
HaeIII GGCC 3 cut(s) 55, 108, 164
HapII CCGG 1 cut(s) 72
Hin1I GRCGYC 1 cut(s) 284
Hin1II CATG 1 cut(s) 19
HincII GTYRAC 1 cut(s) 121
HindII GTYRAC 1 cut(s) 121
HpaII CCGG 1 cut(s) 72
HphI GGTGA 1 cut(s) 265
Hpy166II GTNNAC 1 cut(s) 121
Hpy188I TCNGA 2 cut(s) 91, 292
Hpy188III TCNNGA 2 cut(s) 150, 274
Hpy8I GTNNAC 1 cut(s) 121
Hpy99I CGWCG 3 cut(s) 102, 289, 292
HpyCH4IV ACGT 2 cut(s) 100, 284
HpySE526I ACGT 2 cut(s) 100, 284
Hsp92I GRCGYC 1 cut(s) 284
Hsp92II CATG 1 cut(s) 19
Kzo9I GATC 2 cut(s) 20, 31
LpnPI CCDG 7 cut(s) 85, 90, 135, 153, 168, 240, 251
MaeII ACGT 2 cut(s) 100, 284
MalI GATC 2 cut(s) 22, 33
MboI GATC 2 cut(s) 20, 31
MboII GAAGA 2 cut(s) 20, 289
MflI RGATCY 1 cut(s) 31
MluCI AATT 1 cut(s) 348
MmeI TCCRAC 1 cut(s) 270
MnlI CCTC 4 cut(s) 41, 66, 202, 363
MseI TTAA 1 cut(s) 333
MspI CCGG 1 cut(s) 72
MspR9I CCNGG 1 cut(s) 73
NciI CCSGG 1 cut(s) 73
NdeII GATC 2 cut(s) 20, 31
NlaIII CATG 1 cut(s) 19
NlaIV GGNNCC 1 cut(s) 225
PaeR7I CTCGAG 1 cut(s) 272
PceI AGGCCT 1 cut(s) 164
PflFI GACNNNGTC 1 cut(s) 286
PshBI ATTAAT 1 cut(s) 333
PspN4I GGNNCC 1 cut(s) 225
PspPI GGNCC 1 cut(s) 152
PsuI RGATCY 1 cut(s) 31
PsyI GACNNNGTC 1 cut(s) 286
RsaI GTAC 2 cut(s) 14, 103
RsaNI GTAC 2 cut(s) 13, 102
SalI GTCGAC 1 cut(s) 119
SaqAI TTAA 1 cut(s) 333
Sau3AI GATC 2 cut(s) 20, 31
Sau96I GGNCC 1 cut(s) 152
ScrFI CCNGG 1 cut(s) 73
SetI ASST 4 cut(s) 103, 157, 174, 287
Sfr274I CTCGAG 1 cut(s) 272
SinI GGWCC 1 cut(s) 152
SlaI CTCGAG 1 cut(s) 272
SmlI CTYRAG 1 cut(s) 272
SmoI CTYRAG 1 cut(s) 272
Sse9I AATT 1 cut(s) 348
SseBI AGGCCT 1 cut(s) 164
StuI AGGCCT 1 cut(s) 164
StyD4I CCNGG 1 cut(s) 71
StyI CCWWGG 2 cut(s) 109, 159
TaiI ACGT 2 cut(s) 103, 287
TaqI TCGA 3 cut(s) 97, 120, 273
TasI AATT 1 cut(s) 348
TatI WGTACW 1 cut(s) 12
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TscAI CASTG 2 cut(s) 30, 234
TspDTI ATGAA 3 cut(s) 17, 21, 70
TspRI CASTG 2 cut(s) 30, 234
Tth111I GACNNNGTC 1 cut(s) 286
VpaK11BI GGWCC 1 cut(s) 152
VspI ATTAAT 1 cut(s) 333
XhoI CTCGAG 1 cut(s) 272
XmiI GTMKAC 1 cut(s) 120
ZraI GACGTC 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.