Rorug06G0071900

Benzyl alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000190
Physical Location & Seq
Forward (+)
9567986 .. 9571082
3097 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0071900.1

Sequence Viewer

Length: 675 bp
ATGGTGGACACGGTGAGCCCACCCCGGTGGTCGGAGATCGGTGACGGAGGATGCGAGAAGAAGGAGTTTGGGAAAACTAGAGATGATTTGAAGTCGCCTCAAAGTCTCGGTCAGATTATAAGGGAAGTTCTAAGACCTCTCGATAATATTGAACGCTGTAAGTTTAGGGTCAAAATTATGTACAACCATGTCAATGATAGATCTGGGATGGAAGCTCCTCTGATTGCTAATGATGTTTATGAAATCATCATGAAGAATGCAGTGTGTTTGGACAGTGAGATCATTTACGACCGCGACTTTGACTACGACTACTTTGGTTTCAAGACTCTTGAGAGGTCTTACCTCTTGAAGGTTCATGGGAAGGTTGTAGAAAGGCCTCAACACATGCTAATGAGGGTTGCTATTGGAATACACAAGAATGATATTGACTCTGTAGGTTTTGTTAGAGGACTTTGTCAAATGTCATATTTATTCACATATGTCATCATTATTGAGAAGCATAGAGTCATCTGGTGCAAGTTCAAGACATGCAAAAGTGGCGGAGCTGGATCTGCTAAGCACATGCACTTGTTAATCGACATAGCTCATCTTGCAACCAACAACACAAAGGAACTATATGGTGGAATGTTGCATAAAGAGTCTTTGGGAGATCGAGCGTGGAGTACCAAGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

224

Amino Acids

25.77

Weight (kDa)

8.65

Isoelectric Point (pI)

42.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribonuc_red_lgN PF00317 101 - 141 1e-10 Ribonucleotide reductase, all-alpha domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000190)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03480 AT5G17540
fragaria_vesca FvH4_2g12510 FvH4_3g38880 FvH4_3g40890 FvH4_5g24240 FvH4_5g24250 FvH4_5g24270 FvH4_5g24273 FvH4_6g05391 FvH4_6g05392
malus_domestica MD00G1201900.v1.1 MD00G1202100.v1.1 MD02G1001400.v1.1 MD02G1013900.v1.1 MD02G1014800.v1.1 MD02G1015000.v1.1 MD02G1015200.v1.1 MD03G1080200.v1.1 MD06G1016200.v1.1 MD06G1016500.v1.1 MD06G1017700.v1.1 MD06G1018100.v1.1 MD06G1018200.v1.1 MD06G1018400.v1.1 MD06G1018700.v1.1 MD06G1018800.v1.1 MD06G1019000.v1.1 MD06G1019100.v1.1 MD06G1019300.v1.1 MD06G1019800.v1.1 MD06G1020400.v1.1 MD06G1020700.v1.1 MD06G1020800.v1.1 MD06G1020900.v1.1 MD12G1038300.v1.1 MD12G1039400.v1.1
prunus_persica Prupe.5G017800_v2.0.a1 Prupe.5G017900_v2.0.a1 Prupe.5G018000_v2.0.a1 Prupe.5G018100_v2.0.a1 Prupe.5G018200_v2.0.a1 Prupe.8G000100_v2.0.a1
pyrus_communis pycom02g01330 pycom02g01390 pycom03g06420 pycom06g01300 pycom06g01320 pycom06g01340 pycom06g01500 pycom06g01510 pycom06g01520 pycom12g03300 pycom12g03320
rosa_chinensis RchiOBHm_Chr5g0051841 RchiOBHm_Chr6g0272991 RchiOBHm_Chr7g0213951 RchiOBHm_Chr7g0214051 RchiOBHm_Chr7g0214131 RchiOBHm_Chr7g0214161 RchiOBHm_Chr7g0214231 RchiOBHm_Chr7g0214321 RchiOBHm_Chr7g0214351 RchiOBHm_Chr7g0214391 RchiOBHm_Chr7g0214451 RchiOBHm_Chr7g0222591
rosa_laevigata RLG00000002044 RLG00000002744 RLG00000002751 RLG00000002752 RLG00000002755 RLG00000002756 RLG00000002757 RLG00000002758 RLG00000002762 RLG00000002763 RLG00000013652
rosa_multiflora Rmu_sc0000328.1_g000008 Rmu_sc0003764.1_g000001 Rmu_sc0003764.1_g000002 Rmu_sc0004199.1_g000004 Rmu_sc0004199.1_g000006 Rmu_sc0004199.1_g000014 Rmu_sc0004199.1_g000019 Rmu_sc0004199.1_g000022 Rmu_sc0005063.1_g000018 Rmu_sc0006422.1_g000030 Rmu_sc0006422.1_g000031 Rmu_sc0009579.1_g000011 Rmu_sc0009579.1_g000017 Rmu_sc0016182.1_g000005 Rmu_sc0016182.1_g000007 Rmu_sc0016279.1_g000002 Rmu_ssc0000387.1_g000031
rosa_roxburghii Rroxscaffold_1G00027390 Rroxscaffold_2G00146810 Rroxscaffold_3G00236600 Rroxscaffold_3G00236620 Rroxscaffold_3G00245350 Rroxscaffold_3G00245400 Rroxscaffold_3G00245440 Rroxscaffold_3G00245480 Rroxscaffold_3G00245560 Rroxscaffold_7G00195770
rosa_rugosa Rorug02G0047800 Rorug02G0047900 Rorug05G0276800 Rorug06G0071900 Rorug07G0145400 Rorug07G0145500 Rorug07G0145600 Rorug07G0145700 Rorug07G0145700 Rorug07G0145800 Rorug07G0211200
rosa_samantha Rh5BG359700 Rh6AG187600 Rh6DG181500 Rh7AG278000 Rh7AG278900 Rh7AG279800 Rh7AG279900 Rh7AG280100 Rh7AG280400 Rh7AG280700 Rh7AG281200 Rh7AG354300 Rh7AG354800 Rh7BG272300 Rh7BG272500 Rh7BG272600 Rh7BG272700 Rh7BG272800 Rh7BG273000 Rh7BG343200 Rh7CG297000 Rh7CG297900 Rh7CG298100 Rh7CG298800 Rh7CG299100 Rh7CG299300 Rh7CG299400 Rh7CG300000 Rh7CG300200 Rh7CG300600 Rh7CG371800 Rh7CG371900
rosa_wichuraiana Rw5G032880 Rw6G016270 Rw7G023930 Rw7G023980 Rw7G023990 Rw7G024000 Rw7G024010 Rw7G024020 Rw7G024030 Rw7G029800 Rw7G030090 Rw7G030140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 119
AccII CGCG 1 cut(s) 294
AciI CCGC 2 cut(s) 292, 540
AclWI GGATC 1 cut(s) 556
AfaI GTAC 2 cut(s) 182, 664
AfiI CCNNNNNNNGG 2 cut(s) 31, 349
AgsI TTSAA 5 cut(s) 91, 152, 322, 349, 523
AleI CACNNNNGTG 1 cut(s) 25
AluBI AGCT 3 cut(s) 215, 545, 584
AluI AGCT 3 cut(s) 215, 545, 584
Alw26I GTCTC 1 cut(s) 110
AlwI GGATC 1 cut(s) 556
AoxI GGCC 1 cut(s) 374
ArsI GACNNNNNNTTYG 4 cut(s) 94, 126, 281, 313
AsuC2I CCSGG 1 cut(s) 25
AsuHPI GGTGA 2 cut(s) 25, 53
BanII GRGCYC 1 cut(s) 20
BccI CCATC 1 cut(s) 202
BcnI CCSGG 1 cut(s) 25
BcoDI GTCTC 1 cut(s) 110
BfaI CTAG 1 cut(s) 78
BfmI CTRYAG 1 cut(s) 432
BglII AGATCT 1 cut(s) 200
BlpI GCTNAGC 1 cut(s) 555
Bme1390I CCNGG 1 cut(s) 25
BmrFI CCNGG 1 cut(s) 25
BmsI GCATC 1 cut(s) 41
Bpu1102I GCTNAGC 1 cut(s) 555
BpuEI CTTGAG 1 cut(s) 350
BpuMI CCSGG 1 cut(s) 25
BsaJI CCNNGG 1 cut(s) 23
Bsc4I CCNNNNNNNGG 2 cut(s) 31, 349
BseDI CCNNGG 1 cut(s) 23
BseGI GGATG 2 cut(s) 56, 213
BseLI CCNNNNNNNGG 2 cut(s) 31, 349
BseRI GAGGAG 1 cut(s) 207
Bsh1236I CGCG 1 cut(s) 294
Bsh1285I CGRYCG 1 cut(s) 292
BshFI GGCC 1 cut(s) 376
BsiEI CGRYCG 1 cut(s) 292
BsiSI CCGG 1 cut(s) 25
BslI CCNNNNNNNGG 2 cut(s) 31, 349
BsmAI GTCTC 1 cut(s) 110
BsmI GAATGC 1 cut(s) 262
BsnI GGCC 1 cut(s) 376
Bsp1286I GDGCHC 1 cut(s) 20
Bsp1407I TGTACA 1 cut(s) 180
Bsp143I GATC 5 cut(s) 36, 200, 279, 548, 649
Bsp1720I GCTNAGC 1 cut(s) 555
BspACI CCGC 2 cut(s) 292, 540
BspANI GGCC 1 cut(s) 376
BspFNI CGCG 1 cut(s) 294
BspHI TCATGA 1 cut(s) 249
BspPI GGATC 1 cut(s) 556
BsrGI TGTACA 1 cut(s) 180
BssECI CCNNGG 1 cut(s) 23
BssMI GATC 5 cut(s) 36, 200, 279, 548, 649
Bst4CI ACNGT 2 cut(s) 13, 275
BstAUI TGTACA 1 cut(s) 180
BstDEI CTNAG 2 cut(s) 131, 555
BstENI CCTNNNNNAGG 1 cut(s) 347
BstF5I GGATG 2 cut(s) 56, 213
BstFNI CGCG 1 cut(s) 294
BstKTI GATC 5 cut(s) 39, 203, 282, 551, 652
BstMAI GTCTC 1 cut(s) 110
BstMBI GATC 5 cut(s) 36, 200, 279, 548, 649
BstMCI CGRYCG 1 cut(s) 292
BstMWI GCNNNNNNNGC 3 cut(s) 537, 551, 590
BstNSI RCATGY 3 cut(s) 388, 531, 565
BstSCI CCNGG 1 cut(s) 23
BstSFI CTRYAG 1 cut(s) 432
BstUI CGCG 1 cut(s) 294
BstX2I RGATCY 2 cut(s) 200, 548
BstXI CCANNNNNNTGG 1 cut(s) 27
BstYI RGATCY 2 cut(s) 200, 548
BsuRI GGCC 1 cut(s) 376
BtsCI GGATG 2 cut(s) 56, 213
BtsI GCAGTG 1 cut(s) 267
BtsIMutI CAGTG 2 cut(s) 267, 280
CciI TCATGA 1 cut(s) 249
Csp6I GTAC 2 cut(s) 181, 663
CviAII CATG 6 cut(s) 188, 250, 356, 385, 528, 562
CviJI RGCY 5 cut(s) 18, 215, 376, 545, 584
CviKI_1 RGCY 5 cut(s) 18, 215, 376, 545, 584
CviQI GTAC 2 cut(s) 181, 663
DdeI CTNAG 2 cut(s) 131, 555
DpnI GATC 5 cut(s) 38, 202, 281, 550, 651
DpnII GATC 5 cut(s) 36, 200, 279, 548, 649
EciI GGCGGA 1 cut(s) 555
Eco147I AGGCCT 1 cut(s) 376
Eco24I GRGCYC 1 cut(s) 20
EcoNI CCTNNNNNAGG 1 cut(s) 347
EcoT38I GRGCYC 1 cut(s) 20
FaeI CATG 6 cut(s) 191, 253, 359, 388, 531, 565
FatI CATG 6 cut(s) 187, 249, 355, 384, 527, 561
FauNDI CATATG 1 cut(s) 478
FokI GGATG 2 cut(s) 63, 220
FriOI GRGCYC 1 cut(s) 20
FspBI CTAG 1 cut(s) 78
HaeIII GGCC 1 cut(s) 376
HapII CCGG 1 cut(s) 25
Hin1II CATG 6 cut(s) 191, 253, 359, 388, 531, 565
HinfI GANTC 4 cut(s) 325, 428, 504, 638
HpaII CCGG 1 cut(s) 25
HphI GGTGA 2 cut(s) 25, 53
Hpy166II GTNNAC 1 cut(s) 7
Hpy188I TCNGA 3 cut(s) 34, 114, 222
Hpy188III TCNNGA 6 cut(s) 140, 250, 322, 329, 346, 523
Hpy8I GTNNAC 1 cut(s) 7
HpyAV CCTTC 3 cut(s) 55, 343, 355
HpyCH4III ACNGT 2 cut(s) 13, 275
HpyCH4V TGCA 6 cut(s) 260, 516, 531, 565, 593, 631
HpyF10VI GCNNNNNNNGC 3 cut(s) 537, 551, 590
HpyF3I CTNAG 2 cut(s) 131, 555
Hsp92II CATG 6 cut(s) 191, 253, 359, 388, 531, 565
Kzo9I GATC 5 cut(s) 36, 200, 279, 548, 649
LmnI GCTCC 2 cut(s) 220, 542
LpnPI CCDG 4 cut(s) 38, 189, 496, 531
LweI GCATC 1 cut(s) 41
MaeI CTAG 1 cut(s) 78
MaeIII GTNAC 1 cut(s) 41
MalI GATC 5 cut(s) 38, 202, 281, 550, 651
MboI GATC 5 cut(s) 36, 200, 279, 548, 649
MboII GAAGA 2 cut(s) 70, 265
MflI RGATCY 2 cut(s) 200, 548
MhlI GDGCHC 1 cut(s) 20
MluCI AATT 1 cut(s) 174
MlyI GAGTC 4 cut(s) 319, 422, 513, 647
MmeI TCCRAC 1 cut(s) 12
MnlI CCTC 9 cut(s) 41, 108, 147, 228, 327, 353, 387, 387, 440
MseI TTAA 2 cut(s) 572, 673
MslI CAYNNNNRTG 4 cut(s) 25, 192, 389, 417
MspI CCGG 1 cut(s) 25
MspR9I CCNGG 1 cut(s) 25
Mva1269I GAATGC 1 cut(s) 262
MvnI CGCG 1 cut(s) 294
MwoI GCNNNNNNNGC 3 cut(s) 537, 551, 590
NciI CCSGG 1 cut(s) 25
NdeI CATATG 1 cut(s) 478
NdeII GATC 5 cut(s) 36, 200, 279, 548, 649
NlaIII CATG 6 cut(s) 191, 253, 359, 388, 531, 565
NmuCI GTSAC 1 cut(s) 41
NspI RCATGY 3 cut(s) 388, 531, 565
OliI CACNNNNGTG 1 cut(s) 25
PagI TCATGA 1 cut(s) 249
PceI AGGCCT 1 cut(s) 376
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PctI GAATGC 1 cut(s) 262
PflFI GACNNNGTC 1 cut(s) 453
PleI GAGTC 4 cut(s) 319, 422, 512, 646
PpsI GAGTC 4 cut(s) 319, 422, 512, 646
PsiI TTATAA 1 cut(s) 119
PsuI RGATCY 2 cut(s) 200, 548
PsyI GACNNNGTC 1 cut(s) 453
RsaI GTAC 2 cut(s) 182, 664
RsaNI GTAC 2 cut(s) 181, 663
RseI CAYNNNNRTG 4 cut(s) 25, 192, 389, 417
SaqAI TTAA 2 cut(s) 572, 673
Sau3AI GATC 5 cut(s) 36, 200, 279, 548, 649
SchI GAGTC 4 cut(s) 319, 422, 513, 647
ScrFI CCNGG 1 cut(s) 25
SduI GDGCHC 1 cut(s) 20
SetI ASST 9 cut(s) 139, 217, 338, 345, 354, 366, 439, 547, 586
SfaNI GCATC 1 cut(s) 41
SfcI CTRYAG 1 cut(s) 432
SmiMI CAYNNNNRTG 4 cut(s) 25, 192, 389, 417
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
Sse9I AATT 1 cut(s) 174
SseBI AGGCCT 1 cut(s) 376
SsiI CCGC 2 cut(s) 292, 540
SspI AATATT 1 cut(s) 148
SspMI CTAG 1 cut(s) 78
StuI AGGCCT 1 cut(s) 376
StyD4I CCNGG 1 cut(s) 23
TaaI ACNGT 2 cut(s) 13, 275
TaqI TCGA 3 cut(s) 141, 576, 652
TaqII GACCGA 1 cut(s) 98
TasI AATT 1 cut(s) 174
TatI WGTACW 1 cut(s) 180
Tru1I TTAA 2 cut(s) 572, 673
Tru9I TTAA 2 cut(s) 572, 673
TscAI CASTG 2 cut(s) 267, 280
TseFI GTSAC 1 cut(s) 41
Tsp45I GTSAC 1 cut(s) 41
TspDTI ATGAA 3 cut(s) 255, 266, 344
TspGWI ACGGA 1 cut(s) 60
TspRI CASTG 2 cut(s) 267, 280
Tth111I GACNNNGTC 1 cut(s) 453
XagI CCTNNNNNAGG 1 cut(s) 347
XceI RCATGY 3 cut(s) 388, 531, 565
XspI CTAG 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.