pycom02g01330

Benzyl alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0000190
Physical Location & Seq
Reverse (-)
774820 .. 775689
870 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g01330.1

Sequence Viewer

Length: 870 bp
ATGCACCTTCTATTCTGCCAGTGTGGGAGAGAGAGCTCTTGTTCGCTCGAGATCGATCATTCACCAAGAATTACATGTGCTCATCATGAATATGAAGATGTGATTGATCATTCTGATGGCTCATATGCATTTAGTAACCAATCAAACATGGTTCAACGATCTTTTTACTTTGGTGCCAAGGAGATGAGAGTCCTTCGAAAACAGATTCCACCCCACCTAATTTCCACTTGCTCCACATTTGATTATCAATGCTCGATCACAGCCTGTTTGTGGAAATGTCGCACTCTTGCACTTAAAATTAATCCAAAGCAGGCTGTTCGAGTTTCATGCATTGTCAATGCACGGGGAAAGCGCCATAATGTACGTCTTCCCTTGGGATACTATGGCAATGCATTTGCATTTCCAGCTGCAGTTTCAAAGGCTGAACCTCTATGCAAAAATCCACTGGGATATGCTTTGGAGTTGGTGAAGAAGGCTAAAGCTACCATGAATGAAGAATACTTAAGATCAGTGATCGATCTTTTGGTACTAAGAGGACGACCTCAATATTCATCGACGGGAAGTTATTTAATAGTTTCTGATAATACGCGTGCAGGTTCTGAAGATGTCAATTTTGGATGGGGACAGCCGGTATTTGCTGGACCCGCCAAGGCCTTGGATTTGATTAGCTTCTACATTCAACACAAAAACAACACTGAGGATGGAATATTGGTACCAATGTGTTTGCCATCCTCAGCCATGGAGAGATTTCAGCAGGAACTAGAGAGGATTACTCAGGAACCTAAGGAGGATATATGTAACAACCTTAGATCGAACGAGGATCATGTCAATGATGTAAGTGTTAAACGTAATGCACTTTCTGTAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

290

Amino Acids

32.55

Weight (kDa)

8.21

Isoelectric Point (pI)

52.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 59 - 255 1.1e-25 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000190)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03480 AT5G17540
fragaria_vesca FvH4_2g12510 FvH4_3g38880 FvH4_3g40890 FvH4_5g24240 FvH4_5g24250 FvH4_5g24270 FvH4_5g24273 FvH4_6g05391 FvH4_6g05392
malus_domestica MD00G1201900.v1.1 MD00G1202100.v1.1 MD02G1001400.v1.1 MD02G1013900.v1.1 MD02G1014800.v1.1 MD02G1015000.v1.1 MD02G1015200.v1.1 MD03G1080200.v1.1 MD06G1016200.v1.1 MD06G1016500.v1.1 MD06G1017700.v1.1 MD06G1018100.v1.1 MD06G1018200.v1.1 MD06G1018400.v1.1 MD06G1018700.v1.1 MD06G1018800.v1.1 MD06G1019000.v1.1 MD06G1019100.v1.1 MD06G1019300.v1.1 MD06G1019800.v1.1 MD06G1020400.v1.1 MD06G1020700.v1.1 MD06G1020800.v1.1 MD06G1020900.v1.1 MD12G1038300.v1.1 MD12G1039400.v1.1
prunus_persica Prupe.5G017800_v2.0.a1 Prupe.5G017900_v2.0.a1 Prupe.5G018000_v2.0.a1 Prupe.5G018100_v2.0.a1 Prupe.5G018200_v2.0.a1 Prupe.8G000100_v2.0.a1
pyrus_communis pycom02g01330 pycom02g01390 pycom03g06420 pycom06g01300 pycom06g01320 pycom06g01340 pycom06g01500 pycom06g01510 pycom06g01520 pycom12g03300 pycom12g03320
rosa_chinensis RchiOBHm_Chr5g0051841 RchiOBHm_Chr6g0272991 RchiOBHm_Chr7g0213951 RchiOBHm_Chr7g0214051 RchiOBHm_Chr7g0214131 RchiOBHm_Chr7g0214161 RchiOBHm_Chr7g0214231 RchiOBHm_Chr7g0214321 RchiOBHm_Chr7g0214351 RchiOBHm_Chr7g0214391 RchiOBHm_Chr7g0214451 RchiOBHm_Chr7g0222591
rosa_laevigata RLG00000002044 RLG00000002744 RLG00000002751 RLG00000002752 RLG00000002755 RLG00000002756 RLG00000002757 RLG00000002758 RLG00000002762 RLG00000002763 RLG00000013652
rosa_multiflora Rmu_sc0000328.1_g000008 Rmu_sc0003764.1_g000001 Rmu_sc0003764.1_g000002 Rmu_sc0004199.1_g000004 Rmu_sc0004199.1_g000006 Rmu_sc0004199.1_g000014 Rmu_sc0004199.1_g000019 Rmu_sc0004199.1_g000022 Rmu_sc0005063.1_g000018 Rmu_sc0006422.1_g000030 Rmu_sc0006422.1_g000031 Rmu_sc0009579.1_g000011 Rmu_sc0009579.1_g000017 Rmu_sc0016182.1_g000005 Rmu_sc0016182.1_g000007 Rmu_sc0016279.1_g000002 Rmu_ssc0000387.1_g000031
rosa_roxburghii Rroxscaffold_1G00027390 Rroxscaffold_2G00146810 Rroxscaffold_3G00236600 Rroxscaffold_3G00236620 Rroxscaffold_3G00245350 Rroxscaffold_3G00245400 Rroxscaffold_3G00245440 Rroxscaffold_3G00245480 Rroxscaffold_3G00245560 Rroxscaffold_7G00195770
rosa_rugosa Rorug02G0047800 Rorug02G0047900 Rorug05G0276800 Rorug06G0071900 Rorug07G0145400 Rorug07G0145500 Rorug07G0145600 Rorug07G0145700 Rorug07G0145700 Rorug07G0145800 Rorug07G0211200
rosa_samantha Rh5BG359700 Rh6AG187600 Rh6DG181500 Rh7AG278000 Rh7AG278900 Rh7AG279800 Rh7AG279900 Rh7AG280100 Rh7AG280400 Rh7AG280700 Rh7AG281200 Rh7AG354300 Rh7AG354800 Rh7BG272300 Rh7BG272500 Rh7BG272600 Rh7BG272700 Rh7BG272800 Rh7BG273000 Rh7BG343200 Rh7CG297000 Rh7CG297900 Rh7CG298100 Rh7CG298800 Rh7CG299100 Rh7CG299300 Rh7CG299400 Rh7CG300000 Rh7CG300200 Rh7CG300600 Rh7CG371800 Rh7CG371900
rosa_wichuraiana Rw5G032880 Rw6G016270 Rw7G023930 Rw7G023980 Rw7G023990 Rw7G024000 Rw7G024010 Rw7G024020 Rw7G024030 Rw7G029800 Rw7G030090 Rw7G030140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 584
Acc65I GGTACC 1 cut(s) 712
AccB1I GGYRCC 2 cut(s) 173, 712
AccII CGCG 1 cut(s) 589
AciI CCGC 1 cut(s) 645
AclWI GGATC 1 cut(s) 828
AcuI CTGAAG 1 cut(s) 621
AfaI GTAC 3 cut(s) 363, 528, 714
AfiI CCNNNNNNNGG 1 cut(s) 270
AflII CTTAAG 1 cut(s) 502
AflIII ACRYGT 2 cut(s) 74, 587
AgsI TTSAA 3 cut(s) 155, 417, 680
AluBI AGCT 4 cut(s) 36, 407, 482, 669
AluI AGCT 4 cut(s) 36, 407, 482, 669
Alw21I GWGCWC 2 cut(s) 38, 82
AlwI GGATC 1 cut(s) 828
AlwNI CAGNNNCTG 1 cut(s) 599
Ama87I CYCGRG 1 cut(s) 47
AoxI GGCC 1 cut(s) 651
ApeKI GCWGC 1 cut(s) 407
AseI ATTAAT 1 cut(s) 300
Asp718I GGTACC 1 cut(s) 712
AspLEI GCGC 1 cut(s) 354
AspS9I GGNCC 1 cut(s) 641
AsuHPI GGTGA 2 cut(s) 54, 478
AsuII TTCGAA 1 cut(s) 196
AvaI CYCGRG 1 cut(s) 47
AvaII GGWCC 1 cut(s) 641
AxyI CCTNAGG 1 cut(s) 783
BaeI ACNNNNGTAYC 2 cut(s) 704, 737
BanI GGYRCC 2 cut(s) 173, 712
BanII GRGCYC 1 cut(s) 38
BbsI GAAGAC 1 cut(s) 359
Bbv12I GWGCWC 2 cut(s) 38, 82
BbvCI CCTCAGC 1 cut(s) 733
BbvI GCAGC 1 cut(s) 394
BccI CCATC 4 cut(s) 110, 612, 695, 736
BcgI CGANNNNNNTGC 4 cut(s) 299, 309, 333, 343
BciVI GTATCC 1 cut(s) 371
BclI TGATCA 1 cut(s) 106
BfaI CTAG 1 cut(s) 761
BfmI CTRYAG 1 cut(s) 408
BfoI RGCGCY 1 cut(s) 355
BfrI CTTAAG 1 cut(s) 502
BfuAI ACCTGC 1 cut(s) 584
BfuI GTATCC 1 cut(s) 371
BisI GCNGC 1 cut(s) 408
BlsI GCNGC 1 cut(s) 409
Bme18I GGWCC 1 cut(s) 641
BmeT110I CYCGRG 1 cut(s) 47
BmgT120I GGNCC 1 cut(s) 641
BmiI GGNNCC 4 cut(s) 175, 643, 714, 780
BmrI ACTGGG 1 cut(s) 455
BmuI ACTGGG 1 cut(s) 455
BpiI GAAGAC 1 cut(s) 359
BplI GAGNNNNNCTC 2 cut(s) 757, 789
Bpu10I CCTNAGC 1 cut(s) 733
Bpu14I TTCGAA 1 cut(s) 196
Bsa29I ATCGAT 2 cut(s) 54, 516
BsaJI CCNNGG 5 cut(s) 177, 372, 648, 654, 738
Bsc4I CCNNNNNNNGG 1 cut(s) 270
Bse118I RCCGGY 1 cut(s) 628
Bse1I ACTGG 2 cut(s) 19, 450
Bse21I CCTNAGG 1 cut(s) 783
Bse3DI GCAATG 1 cut(s) 394
BseCI ATCGAT 2 cut(s) 54, 516
BseDI CCNNGG 5 cut(s) 177, 372, 648, 654, 738
BseGI GGATG 3 cut(s) 623, 706, 728
BseLI CCNNNNNNNGG 1 cut(s) 270
BseMI GCAATG 1 cut(s) 394
BseMII CTCAG 3 cut(s) 687, 747, 788
BseNI ACTGG 2 cut(s) 19, 450
BseXI GCAGC 1 cut(s) 394
BsgI GTGCAG 1 cut(s) 612
Bsh1236I CGCG 1 cut(s) 589
BshFI GGCC 1 cut(s) 653
BshNI GGYRCC 2 cut(s) 173, 712
BshVI ATCGAT 2 cut(s) 54, 516
BsiHKAI GWGCWC 2 cut(s) 38, 82
BsiHKCI CYCGRG 1 cut(s) 47
BsiSI CCGG 1 cut(s) 629
BslFI GGGAC 1 cut(s) 636
BslI CCNNNNNNNGG 1 cut(s) 270
BsmFI GGGAC 1 cut(s) 636
BsnI GGCC 1 cut(s) 653
BsoBI CYCGRG 1 cut(s) 47
Bsp119I TTCGAA 1 cut(s) 196
Bsp1286I GDGCHC 2 cut(s) 38, 82
Bsp19I CCATGG 1 cut(s) 738
BspACI CCGC 1 cut(s) 645
BspANI GGCC 1 cut(s) 653
BspCNI CTCAG 3 cut(s) 688, 746, 787
BspDI ATCGAT 2 cut(s) 54, 516
BspFNI CGCG 1 cut(s) 589
BspHI TCATGA 1 cut(s) 85
BspLI GGNNCC 4 cut(s) 175, 643, 714, 780
BspMAI CTGCAG 1 cut(s) 412
BspMI ACCTGC 1 cut(s) 584
BspPI GGATC 1 cut(s) 828
BspT104I TTCGAA 1 cut(s) 196
BspT107I GGYRCC 2 cut(s) 173, 712
BspTI CTTAAG 1 cut(s) 502
BsrDI GCAATG 1 cut(s) 394
BsrFI RCCGGY 1 cut(s) 628
BsrI ACTGG 2 cut(s) 19, 450
BssAI RCCGGY 1 cut(s) 628
BssECI CCNNGG 5 cut(s) 177, 372, 648, 654, 738
BssT1I CCWWGG 5 cut(s) 177, 372, 648, 654, 738
BstAFI CTTAAG 1 cut(s) 502
BstBI TTCGAA 1 cut(s) 196
BstC8I GCNNGC 2 cut(s) 312, 591
BstDEI CTNAG 6 cut(s) 530, 696, 733, 774, 783, 806
BstDSI CCRYGG 1 cut(s) 738
BstF5I GGATG 3 cut(s) 623, 706, 728
BstFNI CGCG 1 cut(s) 589
BstH2I RGCGCY 1 cut(s) 355
BstHHI GCGC 1 cut(s) 354
BstMWI GCNNNNNNNGC 2 cut(s) 404, 644
BstNSI RCATGY 1 cut(s) 78
BstSFI CTRYAG 1 cut(s) 408
BstUI CGCG 1 cut(s) 589
BstV1I GCAGC 1 cut(s) 394
BstV2I GAAGAC 1 cut(s) 359
BstXI CCANNNNNNTGG 1 cut(s) 655
Bsu15I ATCGAT 2 cut(s) 54, 516
Bsu36I CCTNAGG 1 cut(s) 783
BsuI GTATCC 1 cut(s) 371
BsuRI GGCC 1 cut(s) 653
BsuTUI ATCGAT 2 cut(s) 54, 516
BtgI CCRYGG 1 cut(s) 738
BtsCI GGATG 3 cut(s) 623, 706, 728
BtsIMutI CAGTG 4 cut(s) 26, 443, 516, 693
BveI ACCTGC 1 cut(s) 584
Cac8I GCNNGC 2 cut(s) 312, 591
CaiI CAGNNNCTG 1 cut(s) 599
CciI TCATGA 1 cut(s) 85
CfoI GCGC 1 cut(s) 354
Cfr10I RCCGGY 1 cut(s) 628
Cfr13I GGNCC 1 cut(s) 641
ClaI ATCGAT 2 cut(s) 54, 516
Csp6I GTAC 3 cut(s) 362, 527, 713
CviAII CATG 7 cut(s) 75, 86, 148, 327, 487, 739, 824
CviQI GTAC 3 cut(s) 362, 527, 713
DdeI CTNAG 6 cut(s) 530, 696, 733, 774, 783, 806
Ecl136II GAGCTC 1 cut(s) 36
Eco130I CCWWGG 5 cut(s) 177, 372, 648, 654, 738
Eco147I AGGCCT 1 cut(s) 653
Eco24I GRGCYC 1 cut(s) 38
Eco47I GGWCC 1 cut(s) 641
Eco53kI GAGCTC 1 cut(s) 36
Eco57I CTGAAG 1 cut(s) 621
Eco81I CCTNAGG 1 cut(s) 783
Eco88I CYCGRG 1 cut(s) 47
EcoICRI GAGCTC 1 cut(s) 36
EcoT14I CCWWGG 5 cut(s) 177, 372, 648, 654, 738
EcoT22I ATGCAT 3 cut(s) 130, 332, 394
EcoT38I GRGCYC 1 cut(s) 38
ErhI CCWWGG 5 cut(s) 177, 372, 648, 654, 738
FaeI CATG 7 cut(s) 78, 89, 151, 330, 490, 742, 827
FaqI GGGAC 1 cut(s) 636
FatI CATG 7 cut(s) 74, 85, 147, 326, 486, 738, 823
FauI CCCGC 1 cut(s) 652
FauNDI CATATG 1 cut(s) 124
FbaI TGATCA 1 cut(s) 106
Fnu4HI GCNGC 1 cut(s) 408
FokI GGATG 3 cut(s) 630, 713, 715
FriOI GRGCYC 1 cut(s) 38
Fsp4HI GCNGC 1 cut(s) 408
FspBI CTAG 1 cut(s) 761
GlaI GCGC 1 cut(s) 353
GluI GCNGC 1 cut(s) 408
HaeII RGCGCY 1 cut(s) 355
HaeIII GGCC 1 cut(s) 653
HapII CCGG 1 cut(s) 629
HhaI GCGC 1 cut(s) 354
Hin1II CATG 7 cut(s) 78, 89, 151, 330, 490, 742, 827
Hin6I GCGC 1 cut(s) 352
HinP1I GCGC 1 cut(s) 352
HinfI GANTC 2 cut(s) 189, 205
HpaII CCGG 1 cut(s) 629
HphI GGTGA 2 cut(s) 54, 478
Hpy188I TCNGA 3 cut(s) 115, 580, 601
Hpy188III TCNNGA 3 cut(s) 49, 86, 776
Hpy99I CGWCG 1 cut(s) 559
HpyAV CCTTC 3 cut(s) 17, 203, 466
HpyCH4IV ACGT 2 cut(s) 364, 847
HpyF10VI GCNNNNNNNGC 2 cut(s) 404, 644
HpyF3I CTNAG 6 cut(s) 530, 696, 733, 774, 783, 806
HpySE526I ACGT 2 cut(s) 364, 847
Hsp92II CATG 7 cut(s) 78, 89, 151, 330, 490, 742, 827
HspAI GCGC 1 cut(s) 352
KpnI GGTACC 1 cut(s) 716
Ksp22I TGATCA 1 cut(s) 106
LmnI GCTCC 1 cut(s) 236
Lsp1109I GCAGC 1 cut(s) 394
MaeI CTAG 1 cut(s) 761
MaeII ACGT 2 cut(s) 364, 847
MaeIII GTNAC 2 cut(s) 134, 797
MboII GAAGA 5 cut(s) 107, 359, 481, 506, 614
MhlI GDGCHC 2 cut(s) 38, 82
MluCI AATT 4 cut(s) 69, 219, 297, 610
MluI ACGCGT 1 cut(s) 587
MlyI GAGTC 1 cut(s) 198
MnlI CCTC 8 cut(s) 438, 527, 552, 691, 742, 759, 781, 811
Mph1103I ATGCAT 3 cut(s) 130, 332, 394
MseI TTAA 5 cut(s) 294, 300, 503, 569, 843
MslI CAYNNNNRTG 3 cut(s) 90, 114, 828
MspA1I CMGCKG 1 cut(s) 407
MspCI CTTAAG 1 cut(s) 502
MspI CCGG 1 cut(s) 629
MvnI CGCG 1 cut(s) 589
MwoI GCNNNNNNNGC 2 cut(s) 404, 644
NcoI CCATGG 1 cut(s) 738
NdeI CATATG 1 cut(s) 124
NlaIII CATG 7 cut(s) 78, 89, 151, 330, 490, 742, 827
NlaIV GGNNCC 4 cut(s) 175, 643, 714, 780
NsiI ATGCAT 3 cut(s) 130, 332, 394
NspI RCATGY 1 cut(s) 78
NspV TTCGAA 1 cut(s) 196
PaeR7I CTCGAG 1 cut(s) 47
PagI TCATGA 1 cut(s) 85
PceI AGGCCT 1 cut(s) 653
PciI ACATGT 1 cut(s) 74
PfeI GAWTC 1 cut(s) 205
PkrI GCNGC 1 cut(s) 409
PleI GAGTC 1 cut(s) 197
PpsI GAGTC 1 cut(s) 197
PscI ACATGT 1 cut(s) 74
PshBI ATTAAT 1 cut(s) 300
Psp124BI GAGCTC 1 cut(s) 38
PspN4I GGNNCC 4 cut(s) 175, 643, 714, 780
PspPI GGNCC 1 cut(s) 641
PstI CTGCAG 1 cut(s) 412
PstNI CAGNNNCTG 1 cut(s) 599
PvuII CAGCTG 1 cut(s) 407
RsaI GTAC 3 cut(s) 363, 528, 714
RsaNI GTAC 3 cut(s) 362, 527, 713
RseI CAYNNNNRTG 3 cut(s) 90, 114, 828
SacI GAGCTC 1 cut(s) 38
SaqAI TTAA 5 cut(s) 294, 300, 503, 569, 843
SatI GCNGC 1 cut(s) 408
Sau96I GGNCC 1 cut(s) 641
SchI GAGTC 1 cut(s) 198
SduI GDGCHC 2 cut(s) 38, 82
SfcI CTRYAG 1 cut(s) 408
Sfr274I CTCGAG 1 cut(s) 47
SfuI TTCGAA 1 cut(s) 196
SinI GGWCC 1 cut(s) 641
SlaI CTCGAG 1 cut(s) 47
SmiMI CAYNNNNRTG 3 cut(s) 90, 114, 828
SmlI CTYRAG 2 cut(s) 47, 502
SmoI CTYRAG 2 cut(s) 47, 502
Sse9I AATT 4 cut(s) 69, 219, 297, 610
SseBI AGGCCT 1 cut(s) 653
SsiI CCGC 1 cut(s) 645
SspI AATATT 2 cut(s) 548, 708
SspMI CTAG 1 cut(s) 761
SstI GAGCTC 1 cut(s) 38
StuI AGGCCT 1 cut(s) 653
StyI CCWWGG 5 cut(s) 177, 372, 648, 654, 738
TaiI ACGT 2 cut(s) 367, 850
TaqI TCGA 8 cut(s) 48, 54, 196, 254, 319, 516, 554, 812
TasI AATT 4 cut(s) 69, 219, 297, 610
TfiI GAWTC 1 cut(s) 205
Tru1I TTAA 5 cut(s) 294, 300, 503, 569, 843
Tru9I TTAA 5 cut(s) 294, 300, 503, 569, 843
TscAI CASTG 4 cut(s) 26, 450, 516, 700
TseI GCWGC 1 cut(s) 407
TspDTI ATGAA 6 cut(s) 102, 108, 315, 503, 507, 540
TspRI CASTG 4 cut(s) 26, 450, 516, 700
Vha464I CTTAAG 1 cut(s) 502
VpaK11BI GGWCC 1 cut(s) 641
VspI ATTAAT 1 cut(s) 300
XceI RCATGY 1 cut(s) 78
XhoI CTCGAG 1 cut(s) 47
XspI CTAG 1 cut(s) 761
Zsp2I ATGCAT 3 cut(s) 130, 332, 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.