Rh7CG371900

Benzyl alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000190
Physical Location & Seq
Forward (+)
46810847 .. 46811695
849 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG371900.1

Sequence Viewer

Length: 849 bp
ATGTGTGACGCATTTGGTTTGGTTCAATTCTTGAACGCAGTAGGCGAGATTGCCCTAGGCGCAGAAGCACCTTCTACTCCACCAGTGTGGGAACGAGAGCTCTTGAACGCCCGAGATCCCCCACGAATTTCATGTACACATCATGAATTTGATGATACCACTGGCCCCTCGTATCTGAACTCTGCAGCGACGGTCCAACAATCTTTCTGTTTTGGTCCCGAGGAGATAAAGGCCCTTAAGAAGCATCTTCCACCACACCTTTCGACCTGTTCATCCACATTTGATTTATTAACAGCTTGCGTGTGGAAATGTCGAATAATTTCACTTCAAATGGATCCCAAACAAATTGTCCGTCTGTCATGCATAATTAATGCACGTGGTAAACACAACAATGTATGTCTTCCTCGGGGATACTATGGCAACGCATTTGCATATCCGGCTGCTGTTTCAACTGCAGAACGTTTATGTAACAGTCCGTTGGGATATGCAGTGGAGTTGGTGAAAAAATCGAAAGCTAAAATGAGTGAAGAGTACTTAAGATCTGTGGCAGATTTTACGGAGATAAGAGGACGACCTCCACTTGCAATGAAAGGCATTAGTGACTTTACAGTTTCGGATAACACACGAACAGGTGCAGGAGAAATTGATTTCGGGTGGGGAAAGCCAATATATGCTGGAGTTGCCAAGTCCACTGTTCTGATTAGCTTCTATGTCAGGAACATAAACAAAGATGAGCAATATGAAATTCTGGTACCAATATGCTTGCCATTGTTGTCTATGGAGAAGTTTCAGCAAGAGCTCAAGAAGATGATTAGTTTCGACAAAGTGGAGATACCATCACGTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

282

Amino Acids

31.35

Weight (kDa)

7.99

Isoelectric Point (pI)

49.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 1 - 269 4.4e-42 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000190)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03480 AT5G17540
fragaria_vesca FvH4_2g12510 FvH4_3g38880 FvH4_3g40890 FvH4_5g24240 FvH4_5g24250 FvH4_5g24270 FvH4_5g24273 FvH4_6g05391 FvH4_6g05392
malus_domestica MD00G1201900.v1.1 MD00G1202100.v1.1 MD02G1001400.v1.1 MD02G1013900.v1.1 MD02G1014800.v1.1 MD02G1015000.v1.1 MD02G1015200.v1.1 MD03G1080200.v1.1 MD06G1016200.v1.1 MD06G1016500.v1.1 MD06G1017700.v1.1 MD06G1018100.v1.1 MD06G1018200.v1.1 MD06G1018400.v1.1 MD06G1018700.v1.1 MD06G1018800.v1.1 MD06G1019000.v1.1 MD06G1019100.v1.1 MD06G1019300.v1.1 MD06G1019800.v1.1 MD06G1020400.v1.1 MD06G1020700.v1.1 MD06G1020800.v1.1 MD06G1020900.v1.1 MD12G1038300.v1.1 MD12G1039400.v1.1
prunus_persica Prupe.5G017800_v2.0.a1 Prupe.5G017900_v2.0.a1 Prupe.5G018000_v2.0.a1 Prupe.5G018100_v2.0.a1 Prupe.5G018200_v2.0.a1 Prupe.8G000100_v2.0.a1
pyrus_communis pycom02g01330 pycom02g01390 pycom03g06420 pycom06g01300 pycom06g01320 pycom06g01340 pycom06g01500 pycom06g01510 pycom06g01520 pycom12g03300 pycom12g03320
rosa_chinensis RchiOBHm_Chr5g0051841 RchiOBHm_Chr6g0272991 RchiOBHm_Chr7g0213951 RchiOBHm_Chr7g0214051 RchiOBHm_Chr7g0214131 RchiOBHm_Chr7g0214161 RchiOBHm_Chr7g0214231 RchiOBHm_Chr7g0214321 RchiOBHm_Chr7g0214351 RchiOBHm_Chr7g0214391 RchiOBHm_Chr7g0214451 RchiOBHm_Chr7g0222591
rosa_laevigata RLG00000002044 RLG00000002744 RLG00000002751 RLG00000002752 RLG00000002755 RLG00000002756 RLG00000002757 RLG00000002758 RLG00000002762 RLG00000002763 RLG00000013652
rosa_multiflora Rmu_sc0000328.1_g000008 Rmu_sc0003764.1_g000001 Rmu_sc0003764.1_g000002 Rmu_sc0004199.1_g000004 Rmu_sc0004199.1_g000006 Rmu_sc0004199.1_g000014 Rmu_sc0004199.1_g000019 Rmu_sc0004199.1_g000022 Rmu_sc0005063.1_g000018 Rmu_sc0006422.1_g000030 Rmu_sc0006422.1_g000031 Rmu_sc0009579.1_g000011 Rmu_sc0009579.1_g000017 Rmu_sc0016182.1_g000005 Rmu_sc0016182.1_g000007 Rmu_sc0016279.1_g000002 Rmu_ssc0000387.1_g000031
rosa_roxburghii Rroxscaffold_1G00027390 Rroxscaffold_2G00146810 Rroxscaffold_3G00236600 Rroxscaffold_3G00236620 Rroxscaffold_3G00245350 Rroxscaffold_3G00245400 Rroxscaffold_3G00245440 Rroxscaffold_3G00245480 Rroxscaffold_3G00245560 Rroxscaffold_7G00195770
rosa_rugosa Rorug02G0047800 Rorug02G0047900 Rorug05G0276800 Rorug06G0071900 Rorug07G0145400 Rorug07G0145500 Rorug07G0145600 Rorug07G0145700 Rorug07G0145700 Rorug07G0145800 Rorug07G0211200
rosa_samantha Rh5BG359700 Rh6AG187600 Rh6DG181500 Rh7AG278000 Rh7AG278900 Rh7AG279800 Rh7AG279900 Rh7AG280100 Rh7AG280400 Rh7AG280700 Rh7AG281200 Rh7AG354300 Rh7AG354800 Rh7BG272300 Rh7BG272500 Rh7BG272600 Rh7BG272700 Rh7BG272800 Rh7BG273000 Rh7BG343200 Rh7CG297000 Rh7CG297900 Rh7CG298100 Rh7CG298800 Rh7CG299100 Rh7CG299300 Rh7CG299400 Rh7CG300000 Rh7CG300200 Rh7CG300600 Rh7CG371800 Rh7CG371900
rosa_wichuraiana Rw5G032880 Rw6G016270 Rw7G023930 Rw7G023980 Rw7G023990 Rw7G024000 Rw7G024010 Rw7G024020 Rw7G024030 Rw7G029800 Rw7G030090 Rw7G030140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 751
AccB1I GGYRCC 1 cut(s) 751
AclI AACGTT 1 cut(s) 460
AclWI GGATC 3 cut(s) 110, 329, 342
AcsI RAATTY 3 cut(s) 126, 146, 744
AcvI CACGTG 1 cut(s) 377
AfaI GTAC 3 cut(s) 136, 533, 753
AflII CTTAAG 2 cut(s) 236, 535
AgsI TTSAA 5 cut(s) 26, 34, 106, 329, 450
AleI CACNNNNGTG 1 cut(s) 85
AluBI AGCT 5 cut(s) 100, 296, 515, 705, 799
AluI AGCT 5 cut(s) 100, 296, 515, 705, 799
Alw21I GWGCWC 2 cut(s) 102, 801
AlwI GGATC 3 cut(s) 110, 329, 342
Ama87I CYCGRG 3 cut(s) 111, 218, 405
AoxI GGCC 2 cut(s) 163, 231
ApeKI GCWGC 2 cut(s) 185, 440
ApoI RAATTY 3 cut(s) 126, 146, 744
ArsI GACNNNNNNTTYG 4 cut(s) 333, 337, 365, 369
AseI ATTAAT 1 cut(s) 369
Asp700I GAANNNNTTC 1 cut(s) 319
Asp718I GGTACC 1 cut(s) 751
AspA2I CCTAGG 1 cut(s) 55
AspLEI GCGC 1 cut(s) 62
AspS9I GGNCC 4 cut(s) 164, 193, 215, 232
AsuHPI GGTGA 1 cut(s) 511
AvaI CYCGRG 3 cut(s) 111, 218, 405
AvaII GGWCC 2 cut(s) 193, 215
AvrII CCTAGG 1 cut(s) 55
BamHI GGATCC 1 cut(s) 334
BanI GGYRCC 1 cut(s) 751
BanII GRGCYC 2 cut(s) 102, 801
BbrPI CACGTG 1 cut(s) 377
BbsI GAAGAC 1 cut(s) 392
Bbv12I GWGCWC 2 cut(s) 102, 801
BbvI GCAGC 2 cut(s) 197, 427
BccI CCATC 1 cut(s) 844
BciVI GTATCC 1 cut(s) 404
BfaI CTAG 1 cut(s) 56
BfmI CTRYAG 2 cut(s) 183, 453
BfrI CTTAAG 2 cut(s) 236, 535
BfuI GTATCC 1 cut(s) 404
BglII AGATCT 1 cut(s) 539
BisI GCNGC 2 cut(s) 186, 441
BlnI CCTAGG 1 cut(s) 55
BlsI GCNGC 2 cut(s) 187, 442
BmcAI AGTACT 1 cut(s) 533
Bme18I GGWCC 2 cut(s) 193, 215
BmeT110I CYCGRG 3 cut(s) 111, 218, 405
BmgT120I GGNCC 4 cut(s) 164, 193, 215, 232
BmiI GGNNCC 4 cut(s) 166, 217, 336, 753
BmsI GCATC 1 cut(s) 253
BpiI GAAGAC 1 cut(s) 392
BpmI CTGGAG 1 cut(s) 696
BpuEI CTTGAG 1 cut(s) 785
BsaAI YACGTR 2 cut(s) 377, 842
BsaJI CCNNGG 3 cut(s) 55, 219, 404
Bse1I ACTGG 2 cut(s) 83, 166
Bse3DI GCAATG 1 cut(s) 591
BseDI CCNNGG 3 cut(s) 55, 219, 404
BseGI GGATG 1 cut(s) 272
BseMI GCAATG 1 cut(s) 591
BseNI ACTGG 2 cut(s) 83, 166
BseRI GAGGAG 1 cut(s) 236
BseXI GCAGC 2 cut(s) 197, 427
BsgI GTGCAG 1 cut(s) 654
BshFI GGCC 2 cut(s) 165, 233
BshNI GGYRCC 1 cut(s) 751
BsiHKAI GWGCWC 2 cut(s) 102, 801
BsiHKCI CYCGRG 3 cut(s) 111, 218, 405
BsiSI CCGG 1 cut(s) 437
BslFI GGGAC 1 cut(s) 201
BsmFI GGGAC 1 cut(s) 201
BsnI GGCC 2 cut(s) 165, 233
BsoBI CYCGRG 3 cut(s) 111, 218, 405
Bsp1286I GDGCHC 2 cut(s) 102, 801
Bsp1407I TGTACA 1 cut(s) 134
Bsp143I GATC 3 cut(s) 115, 334, 539
BspANI GGCC 2 cut(s) 165, 233
BspHI TCATGA 1 cut(s) 142
BspLI GGNNCC 4 cut(s) 166, 217, 336, 753
BspMAI CTGCAG 2 cut(s) 187, 457
BspPI GGATC 3 cut(s) 110, 329, 342
BspT107I GGYRCC 1 cut(s) 751
BspTI CTTAAG 2 cut(s) 236, 535
BsrDI GCAATG 1 cut(s) 591
BsrGI TGTACA 1 cut(s) 134
BsrI ACTGG 2 cut(s) 83, 166
BssECI CCNNGG 3 cut(s) 55, 219, 404
BssMI GATC 3 cut(s) 115, 334, 539
BssT1I CCWWGG 1 cut(s) 55
Bst4CI ACNGT 4 cut(s) 193, 473, 610, 694
Bst6I CTCTTC 1 cut(s) 522
BstAFI CTTAAG 2 cut(s) 236, 535
BstAUI TGTACA 1 cut(s) 134
BstBAI YACGTR 2 cut(s) 377, 842
BstC8I GCNNGC 2 cut(s) 298, 764
BstF5I GGATG 1 cut(s) 272
BstHHI GCGC 1 cut(s) 62
BstKTI GATC 3 cut(s) 118, 337, 542
BstMBI GATC 3 cut(s) 115, 334, 539
BstMWI GCNNNNNNNGC 3 cut(s) 59, 437, 680
BstSFI CTRYAG 2 cut(s) 183, 453
BstV1I GCAGC 2 cut(s) 197, 427
BstV2I GAAGAC 1 cut(s) 392
BstX2I RGATCY 3 cut(s) 115, 334, 539
BstXI CCANNNNNNTGG 1 cut(s) 87
BstYI RGATCY 3 cut(s) 115, 334, 539
BsuI GTATCC 1 cut(s) 404
BsuRI GGCC 2 cut(s) 165, 233
BtsCI GGATG 1 cut(s) 272
BtsI GCAGTG 1 cut(s) 495
BtsIMutI CAGTG 4 cut(s) 90, 159, 495, 690
Cac8I GCNNGC 2 cut(s) 298, 764
CciI TCATGA 1 cut(s) 142
CfoI GCGC 1 cut(s) 62
Cfr13I GGNCC 4 cut(s) 164, 193, 215, 232
CseI GACGC 1 cut(s) 17
Csp6I GTAC 3 cut(s) 135, 532, 752
CviAII CATG 3 cut(s) 132, 143, 360
CviJI RGCY 9 cut(s) 100, 165, 233, 296, 440, 515, 664, 705, 799
CviKI_1 RGCY 9 cut(s) 100, 165, 233, 296, 440, 515, 664, 705, 799
CviQI GTAC 3 cut(s) 135, 532, 752
DpnI GATC 3 cut(s) 117, 336, 541
DpnII GATC 3 cut(s) 115, 334, 539
Eam1104I CTCTTC 1 cut(s) 522
EarI CTCTTC 1 cut(s) 522
Ecl136II GAGCTC 2 cut(s) 100, 799
Eco130I CCWWGG 1 cut(s) 55
Eco24I GRGCYC 2 cut(s) 102, 801
Eco47I GGWCC 2 cut(s) 193, 215
Eco53kI GAGCTC 2 cut(s) 100, 799
Eco72I CACGTG 1 cut(s) 377
Eco88I CYCGRG 3 cut(s) 111, 218, 405
EcoICRI GAGCTC 2 cut(s) 100, 799
EcoO109I RGGNCCY 1 cut(s) 232
EcoT14I CCWWGG 1 cut(s) 55
EcoT22I ATGCAT 1 cut(s) 365
EcoT38I GRGCYC 2 cut(s) 102, 801
ErhI CCWWGG 1 cut(s) 55
FaeI CATG 3 cut(s) 135, 146, 363
FaqI GGGAC 1 cut(s) 201
FatI CATG 3 cut(s) 131, 142, 359
Fnu4HI GCNGC 2 cut(s) 186, 441
FokI GGATG 1 cut(s) 259
FriOI GRGCYC 2 cut(s) 102, 801
Fsp4HI GCNGC 2 cut(s) 186, 441
FspBI CTAG 1 cut(s) 56
GlaI GCGC 1 cut(s) 61
GluI GCNGC 2 cut(s) 186, 441
GsuI CTGGAG 1 cut(s) 696
HaeIII GGCC 2 cut(s) 165, 233
HapII CCGG 1 cut(s) 437
HgaI GACGC 1 cut(s) 17
HhaI GCGC 1 cut(s) 62
Hin1II CATG 3 cut(s) 135, 146, 363
Hin6I GCGC 1 cut(s) 60
HinP1I GCGC 1 cut(s) 60
HpaII CCGG 1 cut(s) 437
HphI GGTGA 1 cut(s) 511
Hpy166II GTNNAC 3 cut(s) 137, 383, 690
Hpy188I TCNGA 3 cut(s) 177, 616, 699
Hpy188III TCNNGA 6 cut(s) 31, 103, 143, 218, 715, 802
Hpy8I GTNNAC 3 cut(s) 137, 383, 690
Hpy99I CGWCG 1 cut(s) 193
HpyAV CCTTC 1 cut(s) 81
HpyCH4III ACNGT 4 cut(s) 193, 473, 610, 694
HpyCH4IV ACGT 3 cut(s) 376, 460, 841
HpyCH4V TGCA 8 cut(s) 185, 363, 374, 431, 455, 488, 584, 635
HpyF10VI GCNNNNNNNGC 3 cut(s) 59, 437, 680
HpySE526I ACGT 3 cut(s) 376, 460, 841
Hsp92II CATG 3 cut(s) 135, 146, 363
HspAI GCGC 1 cut(s) 60
KpnI GGTACC 1 cut(s) 755
Kzo9I GATC 3 cut(s) 115, 334, 539
LpnPI CCDG 9 cut(s) 96, 147, 280, 450, 615, 621, 660, 700, 734
Lsp1109I GCAGC 2 cut(s) 197, 427
LweI GCATC 1 cut(s) 253
MaeI CTAG 1 cut(s) 56
MaeII ACGT 3 cut(s) 376, 460, 841
MaeIII GTNAC 3 cut(s) 5, 467, 599
MalI GATC 3 cut(s) 117, 336, 541
MboI GATC 3 cut(s) 115, 334, 539
MboII GAAGA 4 cut(s) 239, 392, 539, 817
MflI RGATCY 3 cut(s) 115, 334, 539
MhlI GDGCHC 2 cut(s) 102, 801
MluCI AATT 8 cut(s) 26, 126, 146, 318, 345, 366, 642, 744
MmeI TCCRAC 1 cut(s) 220
MnlI CCTC 5 cut(s) 178, 214, 414, 560, 585
Mph1103I ATGCAT 1 cut(s) 365
MroXI GAANNNNTTC 1 cut(s) 319
MseI TTAA 4 cut(s) 237, 290, 369, 536
MslI CAYNNNNRTG 2 cut(s) 85, 390
MspCI CTTAAG 2 cut(s) 236, 535
MspI CCGG 1 cut(s) 437
MwoI GCNNNNNNNGC 3 cut(s) 59, 437, 680
NdeII GATC 3 cut(s) 115, 334, 539
NlaIII CATG 3 cut(s) 135, 146, 363
NlaIV GGNNCC 4 cut(s) 166, 217, 336, 753
NmuCI GTSAC 2 cut(s) 5, 599
NsiI ATGCAT 1 cut(s) 365
OliI CACNNNNGTG 1 cut(s) 85
PagI TCATGA 1 cut(s) 142
PcsI WCGNNNNNNNCGW 1 cut(s) 42
PdmI GAANNNNTTC 1 cut(s) 319
PkrI GCNGC 2 cut(s) 187, 442
PmaCI CACGTG 1 cut(s) 377
PmlI CACGTG 1 cut(s) 377
Ppu21I YACGTR 2 cut(s) 377, 842
PshBI ATTAAT 1 cut(s) 369
Psp124BI GAGCTC 2 cut(s) 102, 801
Psp1406I AACGTT 1 cut(s) 460
PspCI CACGTG 1 cut(s) 377
PspN4I GGNNCC 4 cut(s) 166, 217, 336, 753
PspPI GGNCC 4 cut(s) 164, 193, 215, 232
PstI CTGCAG 2 cut(s) 187, 457
PsuI RGATCY 3 cut(s) 115, 334, 539
RsaI GTAC 3 cut(s) 136, 533, 753
RsaNI GTAC 3 cut(s) 135, 532, 752
RseI CAYNNNNRTG 2 cut(s) 85, 390
SacI GAGCTC 2 cut(s) 102, 801
SaqAI TTAA 4 cut(s) 237, 290, 369, 536
SatI GCNGC 2 cut(s) 186, 441
Sau3AI GATC 3 cut(s) 115, 334, 539
Sau96I GGNCC 4 cut(s) 164, 193, 215, 232
ScaI AGTACT 1 cut(s) 533
SduI GDGCHC 2 cut(s) 102, 801
SfaNI GCATC 1 cut(s) 253
SfcI CTRYAG 2 cut(s) 183, 453
SinI GGWCC 2 cut(s) 193, 215
SmiMI CAYNNNNRTG 2 cut(s) 85, 390
SmlI CTYRAG 3 cut(s) 236, 535, 800
SmoI CTYRAG 3 cut(s) 236, 535, 800
Sse9I AATT 8 cut(s) 26, 126, 146, 318, 345, 366, 642, 744
SspMI CTAG 1 cut(s) 56
SstI GAGCTC 2 cut(s) 102, 801
StyI CCWWGG 1 cut(s) 55
TaaI ACNGT 4 cut(s) 193, 473, 610, 694
TaiI ACGT 3 cut(s) 379, 463, 844
TaqI TCGA 4 cut(s) 263, 313, 509, 819
TasI AATT 8 cut(s) 26, 126, 146, 318, 345, 366, 642, 744
TatI WGTACW 2 cut(s) 134, 531
Tru1I TTAA 4 cut(s) 237, 290, 369, 536
Tru9I TTAA 4 cut(s) 237, 290, 369, 536
TscAI CASTG 4 cut(s) 90, 166, 495, 697
TseFI GTSAC 2 cut(s) 5, 599
TseI GCWGC 2 cut(s) 185, 440
Tsp45I GTSAC 2 cut(s) 5, 599
TspDTI ATGAA 5 cut(s) 120, 159, 261, 602, 756
TspGWI ACGGA 3 cut(s) 341, 465, 572
TspRI CASTG 4 cut(s) 90, 166, 495, 697
Vha464I CTTAAG 2 cut(s) 236, 535
VpaK11BI GGWCC 2 cut(s) 193, 215
VspI ATTAAT 1 cut(s) 369
XapI RAATTY 3 cut(s) 126, 146, 744
XmaJI CCTAGG 1 cut(s) 55
XmnI GAANNNNTTC 1 cut(s) 319
XspI CTAG 1 cut(s) 56
ZrmI AGTACT 1 cut(s) 533
Zsp2I ATGCAT 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.