Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0001289

Physical Location & Seq

Genomic Coordinates Forward (+)

15406331 .. 15408760

Gene Structure 2430 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G137100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGTCGACTGGTTTGACGAAGAGAAGCATGGTGACAATGCTAAGCATTGATGGAGGTGGCATTAGAGGCATAATTCCCAGCATCCTTTTAGCCTTTCTTGAATCCAAGCTTCAAGAATTGGATGGGCCAAATGCAAGAATTGCAGATTATTTCGACATAATTTCCGGAACAAGCACCGGAGGTCTCGTCACCACCATGCTTACAGCTCCCAACAAGGACAACCGACCCCTGTATGAAGCCAAGGACATCATCACCTTCTATCTAGATCACAGCCCTAAGATTTTCCCTCAAAATAGTGCAAATAACTTATTGACATCAATAACAAGTATGGTTCGTGCGGTCATAGGGCCTAAGTATGATGGGAAGTACTTGCGCAAAGTGATAAATGGGCTGCTTAGTGATCTCACTCTCAAGCAGACACTCACGACTATGATTATTCCAACTTTTGATATCAAGTACCTTCAGCCTGTGATCTTCTCAACCACCGATGCCAAAGAAAGTGCTCTGAAAAATGCTAAGCTCTCGGATATCTGCATAAGTACCTCTGCTGCTCCTACTTATCTCCCTGCACACTACTTCGAGGTCAAGGATAGCGAGGGAAAGACCCGAACTTTTGATCTCGTCGATGGTGGGGTTGCTGCAAACAATCCTACAATGCTGGCCTTAAGCCACATATACAGAGAGACGTTGAAGCACAATTCAGAGCCGATAGATGCGACGAGGTTGCTAGTGCTGTCGTTGGGCACAGGTGCAGCCAAGTTTGAAGAGAAGTACAATGCAACCACGGCATCCAAATGGGGTTTGATCAATTGGGTTTTTGACAATGGGAGCACGCCATTGGTAGACATTTTTGGTGATGCAAGTTCTGATATGGTTGACATTCATGTGTCCACCTTCTTCCAGTCCGTCCACGCCAAGGACAACTACCTACGTATTCAGGATGACTCGTTGAGCGGTGAGGAGGCAACCGTGGATATAGCAACGGATAAGAATCTAAAGAGACTTTTGGAGATTGGAAAGGCGTTGTTGAAGAAGCCAATGTCACGGGTGCATTTGGATACAGGCAGGTATAAGAAATCTGAGGGAGAGGTTACTTATGAAGGAGCACTGATTGATTTTGCCAAAAGGCTCTCGGATGCGAAGAAGCACAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0044424 GO:0044464 GO:0047372 GO:0052689

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Patatin

Protein Analysis

385

Amino Acids

42.2

Weight (kDa)

6.72

Isoelectric Point (pI)

32.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001289)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15580 FvH4_1g15580 FvH4_1g15590 FvH4_1g15590 FvH4_1g15590 FvH4_1g15590 FvH4_2g34812
malus_domestica	MD02G1168000.v1.1 MD02G1168100.v1.1 MD08G1105000.v1.1 MD12G1245800.v1.1 MD15G1280200.v1.1
prunus_persica	Prupe.7G137000_v2.0.a1 Prupe.7G137000_v2.0.a1 Prupe.7G137100_v2.0.a1 Prupe.7G137200_v2.0.a1
pyrus_communis	pycom02g13500 pycom02g13510 pycom02g13520 pycom08g13580 pycom12g22530 pycom15g08060 pycom15g24290
rosa_chinensis	RchiOBHm_Chr2g0104901 RchiOBHm_Chr2g0104911 RchiOBHm_Chr2g0104931
rosa_laevigata	RLG00000010724 RLG00000017367 RLG00000017368 RLG00000017377
rosa_multiflora	Rmu_sc0002645.1_g000011 Rmu_sc0002645.1_g000013 Rmu_sc0002645.1_g000014 Rmu_sc0003419.1_g000003 Rmu_sc0010071.1_g000007 Rmu_sc0030819.1_g000001 Rmu_sc0034169.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138650 Rroxscaffold_2G00138680
rosa_rugosa	Rorug02G0123900 Rorug02G0123900
rosa_samantha	Rh2BG181700 Rh2BG181800 Rh2BG182300 Rh2DG180500 Rh2DG180600 Rh2DG181100 Rh5BG275000 Rh5BG275200 Rh6BG431000 Rh6BG478900
rosa_wichuraiana	Rw2G013700 Rw2G013710 Rw2G013720 Rw2G013730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	374
Acc36I	ACCTGC	1 cut(s)	1056
AccBSI	CCGCTC	1 cut(s)	954
AccI	GTMKAC	2 cut(s)	5, 843
AccIII	TCCGGA	1 cut(s)	164
AciI	CCGC	2 cut(s)	338, 954
AcuI	CTGAAG	1 cut(s)	446
AfaI	GTAC	4 cut(s)	368, 458, 541, 773
AfiI	CCNNNNNNNGG	1 cut(s)	916
AflII	CTTAAG	1 cut(s)	664
AgsI	TTSAA	5 cut(s)	101, 113, 691, 764, 1030
AluBI	AGCT	3 cut(s)	109, 206, 520
AluI	AGCT	3 cut(s)	109, 206, 520
Alw21I	GWGCWC	3 cut(s)	505, 833, 1108
Alw26I	GTCTC	3 cut(s)	188, 677, 994
Aor13HI	TCCGGA	1 cut(s)	164
AoxI	GGCC	3 cut(s)	125, 347, 660
ApeKI	GCWGC	4 cut(s)	391, 548, 638, 752
AspLEI	GCGC	1 cut(s)	375
AspS9I	GGNCC	2 cut(s)	125, 347
AsuHPI	GGTGA	5 cut(s)	43, 181, 244, 866, 968
BaeGI	GKGCMC	1 cut(s)	746
Bbv12I	GWGCWC	3 cut(s)	505, 833, 1108
BbvI	GCAGC	4 cut(s)	378, 535, 625, 764
BccI	CCATC	4 cut(s)	44, 116, 353, 620
BceAI	ACGGC	1 cut(s)	801
BcgI	CGANNNNNNTGC	2 cut(s)	706, 740
BciVI	GTATCC	1 cut(s)	1051
BclI	TGATCA	1 cut(s)	804
BcoDI	GTCTC	3 cut(s)	188, 677, 994
BfaI	CTAG	2 cut(s)	263, 728
BfrI	CTTAAG	1 cut(s)	664
BfuAI	ACCTGC	1 cut(s)	1056
BfuI	GTATCC	1 cut(s)	1051
BisI	GCNGC	4 cut(s)	392, 549, 639, 753
BlpI	GCTNAGC	2 cut(s)	41, 516
BlsI	GCNGC	4 cut(s)	393, 550, 640, 754
BmcAI	AGTACT	1 cut(s)	368
BmgT120I	GGNCC	2 cut(s)	125, 347
BmsI	GCATC	6 cut(s)	90, 478, 703, 797, 847, 1126
Bpu1102I	GCTNAGC	2 cut(s)	41, 516
BpuEI	CTTGAG	1 cut(s)	395
BsaAI	YACGTR	1 cut(s)	932
BsaBI	GATNNNNATC	1 cut(s)	990
BsaI	GGTCTC	1 cut(s)	188
BsaJI	CCNNGG	4 cut(s)	240, 783, 915, 969
BsaWI	WCCGGW	2 cut(s)	164, 176
BsaXI	ACNNNNNCTCC	2 cut(s)	171, 201
Bsc4I	CCNNNNNNNGG	1 cut(s)	916
Bse1I	ACTGG	2 cut(s)	13, 901
Bse8I	GATNNNNATC	1 cut(s)	990
BseAI	TCCGGA	1 cut(s)	164
BseDI	CCNNGG	4 cut(s)	240, 783, 915, 969
BseGI	GGATG	5 cut(s)	81, 127, 788, 946, 1141
BseJI	GATNNNNATC	1 cut(s)	990
BseLI	CCNNNNNNNGG	1 cut(s)	916
BseMII	CTCAG	1 cut(s)	1071
BseNI	ACTGG	2 cut(s)	13, 901
BseRI	GAGGAG	1 cut(s)	974
BseSI	GKGCMC	1 cut(s)	746
BseXI	GCAGC	4 cut(s)	378, 535, 625, 764
BseYI	CCCAGC	1 cut(s)	77
BsgI	GTGCAG	2 cut(s)	552, 771
BshFI	GGCC	3 cut(s)	127, 349, 662
BsiHKAI	GWGCWC	3 cut(s)	505, 833, 1108
BsiSI	CCGG	2 cut(s)	165, 177
BslI	CCNNNNNNNGG	1 cut(s)	916
BsmAI	GTCTC	3 cut(s)	188, 677, 994
BsmBI	CGTCTC	1 cut(s)	677
BsnI	GGCC	3 cut(s)	127, 349, 662
Bso31I	GGTCTC	1 cut(s)	188
Bsp1286I	GDGCHC	4 cut(s)	505, 746, 833, 1108
Bsp13I	TCCGGA	1 cut(s)	164
Bsp143I	GATC	5 cut(s)	265, 400, 471, 616, 804
Bsp1720I	GCTNAGC	2 cut(s)	41, 516
BspACI	CCGC	2 cut(s)	338, 954
BspANI	GGCC	3 cut(s)	127, 349, 662
BspCNI	CTCAG	1 cut(s)	1072
BspEI	TCCGGA	1 cut(s)	164
BspMI	ACCTGC	1 cut(s)	1056
BspTI	CTTAAG	1 cut(s)	664
BspTNI	GGTCTC	1 cut(s)	188
BsrBI	CCGCTC	1 cut(s)	954
BsrI	ACTGG	2 cut(s)	13, 901
BssECI	CCNNGG	4 cut(s)	240, 783, 915, 969
BssMI	GATC	5 cut(s)	265, 400, 471, 616, 804
BssT1I	CCWWGG	2 cut(s)	240, 915
Bst4CI	ACNGT	1 cut(s)	970
Bst6I	CTCTTC	2 cut(s)	14, 759
BstAFI	CTTAAG	1 cut(s)	664
BstAPI	GCANNNNNTGC	1 cut(s)	140
BstBAI	YACGTR	1 cut(s)	932
BstC8I	GCNNGC	2 cut(s)	660, 833
BstDEI	CTNAG	6 cut(s)	41, 276, 351, 395, 516, 1080
BstDSI	CCRYGG	2 cut(s)	783, 969
BstF5I	GGATG	5 cut(s)	81, 127, 788, 946, 1141
BstHHI	GCGC	1 cut(s)	375
BstKTI	GATC	5 cut(s)	268, 403, 474, 619, 807
BstMAI	GTCTC	3 cut(s)	188, 677, 994
BstMBI	GATC	5 cut(s)	265, 400, 471, 616, 804
BstMWI	GCNNNNNNNGC	3 cut(s)	66, 140, 785
BstSLI	GKGCMC	1 cut(s)	746
BstSNI	TACGTA	1 cut(s)	932
BstV1I	GCAGC	4 cut(s)	378, 535, 625, 764
BsuI	GTATCC	1 cut(s)	1051
BsuRI	GGCC	3 cut(s)	127, 349, 662
BtgI	CCRYGG	2 cut(s)	783, 969
BtsCI	GGATG	5 cut(s)	81, 127, 788, 946, 1141
BtsIMutI	CAGTG	1 cut(s)	1106
BveI	ACCTGC	1 cut(s)	1056
Cac8I	GCNNGC	2 cut(s)	660, 833
CfoI	GCGC	1 cut(s)	375
Cfr13I	GGNCC	2 cut(s)	125, 347
Csp6I	GTAC	4 cut(s)	367, 457, 540, 772
CviAII	CATG	3 cut(s)	28, 196, 884
CviQI	GTAC	4 cut(s)	367, 457, 540, 772
DdeI	CTNAG	6 cut(s)	41, 276, 351, 395, 516, 1080
DpnI	GATC	5 cut(s)	267, 402, 473, 618, 806
DpnII	GATC	5 cut(s)	265, 400, 471, 616, 804
Eam1104I	CTCTTC	2 cut(s)	14, 759
EarI	CTCTTC	2 cut(s)	14, 759
Eco105I	TACGTA	1 cut(s)	932
Eco130I	CCWWGG	2 cut(s)	240, 915
Eco31I	GGTCTC	1 cut(s)	188
Eco32I	GATATC	2 cut(s)	451, 529
Eco57I	CTGAAG	1 cut(s)	446
EcoO109I	RGGNCCY	1 cut(s)	347
EcoRV	GATATC	2 cut(s)	451, 529
EcoT14I	CCWWGG	2 cut(s)	240, 915
ErhI	CCWWGG	2 cut(s)	240, 915
Esp3I	CGTCTC	1 cut(s)	677
FaeI	CATG	3 cut(s)	31, 199, 887
FatI	CATG	3 cut(s)	27, 195, 883
FbaI	TGATCA	1 cut(s)	804
FblI	GTMKAC	2 cut(s)	5, 843
Fnu4HI	GCNGC	4 cut(s)	392, 549, 639, 753
FokI	GGATG	5 cut(s)	68, 134, 775, 953, 1148
Fsp4HI	GCNGC	4 cut(s)	392, 549, 639, 753
FspBI	CTAG	2 cut(s)	263, 728
FspI	TGCGCA	1 cut(s)	374
GlaI	GCGC	1 cut(s)	374
GluI	GCNGC	4 cut(s)	392, 549, 639, 753
GsaI	CCCAGC	1 cut(s)	81
HaeIII	GGCC	3 cut(s)	127, 349, 662
HapII	CCGG	2 cut(s)	165, 177
HhaI	GCGC	1 cut(s)	375
Hin1II	CATG	3 cut(s)	31, 199, 887
Hin6I	GCGC	1 cut(s)	373
HinP1I	GCGC	1 cut(s)	373
HincII	GTYRAC	2 cut(s)	6, 877
HindII	GTYRAC	2 cut(s)	6, 877
HindIII	AAGCTT	1 cut(s)	107
HinfI	GANTC	3 cut(s)	101, 944, 991
HpaII	CCGG	2 cut(s)	165, 177
HphI	GGTGA	5 cut(s)	43, 181, 244, 866, 968
Hpy166II	GTNNAC	5 cut(s)	6, 844, 877, 891, 910
Hpy188I	TCNGA	6 cut(s)	507, 526, 703, 868, 1081, 1135
Hpy188III	TCNNGA	6 cut(s)	98, 113, 165, 263, 424, 938
Hpy8I	GTNNAC	5 cut(s)	6, 844, 877, 891, 910
Hpy99I	CGWCG	2 cut(s)	626, 721
HpyAV	CCTTC	4 cut(s)	265, 470, 904, 1094
HpyCH4III	ACNGT	1 cut(s)	970
HpyCH4IV	ACGT	2 cut(s)	686, 931
HpyF10VI	GCNNNNNNNGC	3 cut(s)	66, 140, 785
HpyF3I	CTNAG	6 cut(s)	41, 276, 351, 395, 516, 1080
HpySE526I	ACGT	2 cut(s)	686, 931
Hsp92II	CATG	3 cut(s)	31, 199, 887
HspAI	GCGC	1 cut(s)	373
Kpn2I	TCCGGA	1 cut(s)	164
Ksp22I	TGATCA	1 cut(s)	804
Kzo9I	GATC	5 cut(s)	265, 400, 471, 616, 804
LmnI	GCTCC	4 cut(s)	211, 556, 828, 1103
Lsp1109I	GCAGC	4 cut(s)	378, 535, 625, 764
LweI	GCATC	6 cut(s)	90, 478, 703, 797, 847, 1126
MaeI	CTAG	2 cut(s)	263, 728
MaeII	ACGT	2 cut(s)	686, 931
MaeIII	GTNAC	4 cut(s)	31, 187, 1041, 1090
MalI	GATC	5 cut(s)	267, 402, 473, 618, 806
MbiI	CCGCTC	1 cut(s)	954
MboI	GATC	5 cut(s)	265, 400, 471, 616, 804
MboII	GAAGA	6 cut(s)	31, 466, 776, 889, 1042, 1153
MfeI	CAATTG	2 cut(s)	808, 1150
MhlI	GDGCHC	4 cut(s)	505, 746, 833, 1108
MluCI	AATT	7 cut(s)	72, 116, 138, 159, 697, 808, 1150
MlyI	GAGTC	1 cut(s)	938
MmeI	TCCRAC	1 cut(s)	464
MroI	TCCGGA	1 cut(s)	164
MseI	TTAA	1 cut(s)	665
MslI	CAYNNNNRTG	4 cut(s)	194, 428, 793, 884
MspCI	CTTAAG	1 cut(s)	664
MspI	CCGG	2 cut(s)	165, 177
MunI	CAATTG	2 cut(s)	808, 1150
MwoI	GCNNNNNNNGC	3 cut(s)	66, 140, 785
NdeII	GATC	5 cut(s)	265, 400, 471, 616, 804
NlaIII	CATG	3 cut(s)	31, 199, 887
NmuCI	GTSAC	3 cut(s)	31, 187, 1041
NsbI	TGCGCA	1 cut(s)	374
PfeI	GAWTC	2 cut(s)	101, 991
PkrI	GCNGC	4 cut(s)	393, 550, 640, 754
PleI	GAGTC	1 cut(s)	938
PpsI	GAGTC	1 cut(s)	938
Ppu21I	YACGTR	1 cut(s)	932
PspFI	CCCAGC	1 cut(s)	77
PspPI	GGNCC	2 cut(s)	125, 347
RsaI	GTAC	4 cut(s)	368, 458, 541, 773
RsaNI	GTAC	4 cut(s)	367, 457, 540, 772
RseI	CAYNNNNRTG	4 cut(s)	194, 428, 793, 884
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	665
SatI	GCNGC	4 cut(s)	392, 549, 639, 753
Sau3AI	GATC	5 cut(s)	265, 400, 471, 616, 804
Sau96I	GGNCC	2 cut(s)	125, 347
ScaI	AGTACT	1 cut(s)	368
SchI	GAGTC	1 cut(s)	938
SduI	GDGCHC	4 cut(s)	505, 746, 833, 1108
SfaNI	GCATC	6 cut(s)	90, 478, 703, 797, 847, 1126
SmiMI	CAYNNNNRTG	4 cut(s)	194, 428, 793, 884
SmlI	CTYRAG	2 cut(s)	410, 664
SmoI	CTYRAG	2 cut(s)	410, 664
SnaBI	TACGTA	1 cut(s)	932
Sse9I	AATT	7 cut(s)	72, 116, 138, 159, 697, 808, 1150
SsiI	CCGC	2 cut(s)	338, 954
SspMI	CTAG	2 cut(s)	263, 728
StyI	CCWWGG	2 cut(s)	240, 915
TaaI	ACNGT	1 cut(s)	970
TaiI	ACGT	2 cut(s)	689, 934
TaqI	TCGA	4 cut(s)	5, 153, 579, 624
TasI	AATT	7 cut(s)	72, 116, 138, 159, 697, 808, 1150
TatI	WGTACW	2 cut(s)	366, 771
TfiI	GAWTC	2 cut(s)	101, 991
Tru1I	TTAA	1 cut(s)	665
Tru9I	TTAA	1 cut(s)	665
TscAI	CASTG	1 cut(s)	1113
TseFI	GTSAC	3 cut(s)	31, 187, 1041
TseI	GCWGC	4 cut(s)	391, 548, 638, 752
Tsp45I	GTSAC	3 cut(s)	31, 187, 1041
TspDTI	ATGAA	3 cut(s)	249, 872, 1113
TspGWI	ACGGA	2 cut(s)	895, 998
TspRI	CASTG	1 cut(s)	1113
Vha464I	CTTAAG	1 cut(s)	664
XbaI	TCTAGA	1 cut(s)	262
XmiI	GTMKAC	2 cut(s)	5, 843
XspI	CTAG	2 cut(s)	263, 728
ZrmI	AGTACT	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.