Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030819.1

Orthogroup ID

OG0001289

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1526

Gene Structure 1526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030819.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

atgtctactggtttggcaaagagaaagatggtgacagtgttaagcattgacggaggtggtattagaggcatcatccccggcactatcctcggctttctcgaatccaagcttcaggatttggatggcccgagtgcaagacttgccgattattttgatataatcgccggaactagcacaggtggattggtcaccaccatgcttacagctcccaacaaggacaatcgacccatgtatgaagcaaaggacatcaataacttctacttggaacaaacacctaagattttccctcagaagagtcgaaagaacttcttgacatcaattcaaagtttggttggagcggtgaccggaccaaaatacgacgggaattacctgcgcacattgacgaccgggctgcttggcgacctcacaataaaagaaactctaaccaatgtcatcatcccaacgttcgatatcaaacaccttcagcctgtgattttctcaaccattgatgcaaaagaaagttctttgaaaaatgcaaagctttcagatatctgcatcagtacctctgcagctccaacttttctccccgcacactactttgaggttacggacaaacagggaacaactcgttcttttgatctcgttgatggtggggtcgctgcaaataatcct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0044424 GO:0044464 GO:0047372 GO:0052689

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Patatin

Protein Analysis

217

Amino Acids

23.41

Weight (kDa)

7.78

Isoelectric Point (pI)

36.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001289)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15580 FvH4_1g15580 FvH4_1g15590 FvH4_1g15590 FvH4_1g15590 FvH4_1g15590 FvH4_2g34812
malus_domestica	MD02G1168000.v1.1 MD02G1168100.v1.1 MD08G1105000.v1.1 MD12G1245800.v1.1 MD15G1280200.v1.1
prunus_persica	Prupe.7G137000_v2.0.a1 Prupe.7G137000_v2.0.a1 Prupe.7G137100_v2.0.a1 Prupe.7G137200_v2.0.a1
pyrus_communis	pycom02g13500 pycom02g13510 pycom02g13520 pycom08g13580 pycom12g22530 pycom15g08060 pycom15g24290
rosa_chinensis	RchiOBHm_Chr2g0104901 RchiOBHm_Chr2g0104911 RchiOBHm_Chr2g0104931
rosa_laevigata	RLG00000010724 RLG00000017367 RLG00000017368 RLG00000017377
rosa_multiflora	Rmu_sc0002645.1_g000011 Rmu_sc0002645.1_g000013 Rmu_sc0002645.1_g000014 Rmu_sc0003419.1_g000003 Rmu_sc0010071.1_g000007 Rmu_sc0030819.1_g000001 Rmu_sc0034169.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138650 Rroxscaffold_2G00138680
rosa_rugosa	Rorug02G0123900 Rorug02G0123900
rosa_samantha	Rh2BG181700 Rh2BG181800 Rh2BG182300 Rh2DG180500 Rh2DG180600 Rh2DG181100 Rh5BG275000 Rh5BG275200 Rh6BG431000 Rh6BG478900
rosa_wichuraiana	Rw2G013700 Rw2G013710 Rw2G013720 Rw2G013730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	374
Acc36I	ACCTGC	1 cut(s)	378
AccBSI	CCGCTC	1 cut(s)	338
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	2 cut(s)	338, 567
AclI	AACGTT	1 cut(s)	443
AcuI	CTGAAG	2 cut(s)	95, 446
AfaI	GTAC	1 cut(s)	541
AgsI	TTSAA	2 cut(s)	323, 508
AluBI	AGCT	4 cut(s)	109, 206, 520, 551
AluI	AGCT	4 cut(s)	109, 206, 520, 551
Ama87I	CYCGRG	1 cut(s)	127
AoxI	GGCC	1 cut(s)	124
ApeKI	GCWGC	3 cut(s)	391, 548, 638
AspLEI	GCGC	1 cut(s)	375
AspS9I	GGNCC	2 cut(s)	125, 347
AsuC2I	CCSGG	2 cut(s)	78, 388
AsuHPI	GGTGA	3 cut(s)	43, 181, 352
AvaI	CYCGRG	1 cut(s)	127
AvaII	GGWCC	1 cut(s)	347
BbvI	GCAGC	3 cut(s)	378, 560, 625
BccI	CCATC	3 cut(s)	22, 116, 620
BcgI	CGANNNNNNTGC	4 cut(s)	70, 104, 373, 407
BcnI	CCSGG	2 cut(s)	78, 388
BfaI	CTAG	1 cut(s)	171
BfmI	CTRYAG	1 cut(s)	546
BfuAI	ACCTGC	1 cut(s)	378
BisI	GCNGC	3 cut(s)	392, 549, 639
BlsI	GCNGC	3 cut(s)	393, 550, 640
Bme1390I	CCNGG	2 cut(s)	78, 388
Bme18I	GGWCC	1 cut(s)	347
BmeT110I	CYCGRG	1 cut(s)	127
BmgT120I	GGNCC	2 cut(s)	125, 347
BmrFI	CCNGG	2 cut(s)	78, 388
BmsI	GCATC	3 cut(s)	78, 478, 543
BpuMI	CCSGG	2 cut(s)	78, 388
BsaJI	CCNNGG	2 cut(s)	76, 88
BsaWI	WCCGGW	1 cut(s)	344
Bse1I	ACTGG	1 cut(s)	13
BseDI	CCNNGG	2 cut(s)	76, 88
BseGI	GGATG	3 cut(s)	72, 127, 435
BseMII	CTCAG	1 cut(s)	302
BseNI	ACTGG	1 cut(s)	13
BseXI	GCAGC	3 cut(s)	378, 560, 625
Bsh1285I	CGRYCG	1 cut(s)	387
BshFI	GGCC	1 cut(s)	126
BsiEI	CGRYCG	1 cut(s)	387
BsiHKCI	CYCGRG	1 cut(s)	127
BsiSI	CCGG	4 cut(s)	78, 165, 345, 387
BsnI	GGCC	1 cut(s)	126
BsoBI	CYCGRG	1 cut(s)	127
Bsp143I	GATC	1 cut(s)	616
BspACI	CCGC	2 cut(s)	338, 567
BspANI	GGCC	1 cut(s)	126
BspCNI	CTCAG	1 cut(s)	301
BspMAI	CTGCAG	1 cut(s)	550
BspMI	ACCTGC	1 cut(s)	378
BsrBI	CCGCTC	1 cut(s)	338
BsrI	ACTGG	1 cut(s)	13
BssECI	CCNNGG	2 cut(s)	76, 88
BssMI	GATC	1 cut(s)	616
Bst4CI	ACNGT	1 cut(s)	37
Bst6I	CTCTTC	1 cut(s)	287
BstAPI	GCANNNNNTGC	1 cut(s)	140
BstDEI	CTNAG	2 cut(s)	276, 288
BstEII	GGTNACC	2 cut(s)	187, 340
BstF5I	GGATG	3 cut(s)	72, 127, 435
BstHHI	GCGC	1 cut(s)	375
BstKTI	GATC	1 cut(s)	619
BstMBI	GATC	1 cut(s)	616
BstMCI	CGRYCG	1 cut(s)	387
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstPI	GGTNACC	2 cut(s)	187, 340
BstSCI	CCNGG	2 cut(s)	76, 386
BstSFI	CTRYAG	1 cut(s)	546
BstV1I	GCAGC	3 cut(s)	378, 560, 625
BsuRI	GGCC	1 cut(s)	126
BtsCI	GGATG	3 cut(s)	72, 127, 435
BtsIMutI	CAGTG	1 cut(s)	42
BveI	ACCTGC	1 cut(s)	378
CfoI	GCGC	1 cut(s)	375
Cfr13I	GGNCC	2 cut(s)	125, 347
Csp6I	GTAC	1 cut(s)	540
CviAII	CATG	2 cut(s)	196, 229
CviJI	RGCY	8 cut(s)	93, 109, 126, 206, 391, 466, 520, 551
CviKI_1	RGCY	8 cut(s)	93, 109, 126, 206, 391, 466, 520, 551
CviQI	GTAC	1 cut(s)	540
DdeI	CTNAG	2 cut(s)	276, 288
DpnI	GATC	1 cut(s)	618
DpnII	GATC	1 cut(s)	616
Eam1104I	CTCTTC	1 cut(s)	287
EarI	CTCTTC	1 cut(s)	287
Eco32I	GATATC	2 cut(s)	451, 529
Eco47I	GGWCC	1 cut(s)	347
Eco57I	CTGAAG	2 cut(s)	95, 446
Eco88I	CYCGRG	1 cut(s)	127
Eco91I	GGTNACC	2 cut(s)	187, 340
EcoO65I	GGTNACC	2 cut(s)	187, 340
EcoRV	GATATC	2 cut(s)	451, 529
FaeI	CATG	2 cut(s)	199, 232
FaiI	YATR	4 cut(s)	158, 197, 230, 234
FalI	AAGNNNNNCTT	2 cut(s)	293, 325
FatI	CATG	2 cut(s)	195, 228
FauI	CCCGC	1 cut(s)	574
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	3 cut(s)	392, 549, 639
FokI	GGATG	3 cut(s)	59, 134, 422
Fsp4HI	GCNGC	3 cut(s)	392, 549, 639
FspBI	CTAG	1 cut(s)	171
FspI	TGCGCA	1 cut(s)	374
GlaI	GCGC	1 cut(s)	374
GluI	GCNGC	3 cut(s)	392, 549, 639
HaeIII	GGCC	1 cut(s)	126
HapII	CCGG	4 cut(s)	78, 165, 345, 387
HhaI	GCGC	1 cut(s)	375
Hin1II	CATG	2 cut(s)	199, 232
Hin6I	GCGC	1 cut(s)	373
HinP1I	GCGC	1 cut(s)	373
HindIII	AAGCTT	2 cut(s)	107, 518
HinfI	GANTC	2 cut(s)	101, 295
HpaII	CCGG	4 cut(s)	78, 165, 345, 387
HphI	GGTGA	3 cut(s)	43, 181, 352
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	2 cut(s)	291, 526
Hpy188III	TCNNGA	3 cut(s)	98, 113, 310
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	1 cut(s)	362
HpyAV	CCTTC	1 cut(s)	470
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4IV	ACGT	1 cut(s)	443
HpyCH4V	TGCA	6 cut(s)	134, 491, 515, 534, 548, 641
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
HpyF3I	CTNAG	2 cut(s)	276, 288
HpySE526I	ACGT	1 cut(s)	443
Hsp92II	CATG	2 cut(s)	199, 232
HspAI	GCGC	1 cut(s)	373
Kzo9I	GATC	1 cut(s)	616
LmnI	GCTCC	3 cut(s)	211, 335, 556
LpnPI	CCDG	9 cut(s)	91, 98, 162, 178, 358, 383, 400, 480, 581
Lsp1109I	GCAGC	3 cut(s)	378, 560, 625
LweI	GCATC	3 cut(s)	78, 478, 543
MaeI	CTAG	1 cut(s)	171
MaeII	ACGT	1 cut(s)	443
MaeIII	GTNAC	4 cut(s)	31, 187, 340, 583
MalI	GATC	1 cut(s)	618
MbiI	CCGCTC	1 cut(s)	338
MboI	GATC	1 cut(s)	616
MboII	GAAGA	1 cut(s)	304
MluCI	AATT	2 cut(s)	318, 364
MlyI	GAGTC	1 cut(s)	304
MmeI	TCCRAC	2 cut(s)	313, 578
MnlI	CCTC	7 cut(s)	47, 59, 98, 297, 413, 553, 574
MseI	TTAA	1 cut(s)	41
MslI	CAYNNNNRTG	1 cut(s)	194
MspI	CCGG	4 cut(s)	78, 165, 345, 387
MspR9I	CCNGG	2 cut(s)	78, 388
MwoI	GCNNNNNNNGC	1 cut(s)	140
NciI	CCSGG	2 cut(s)	78, 388
NdeII	GATC	1 cut(s)	616
NlaIII	CATG	2 cut(s)	199, 232
NmeAIII	GCCGAG	1 cut(s)	69
NmuCI	GTSAC	3 cut(s)	31, 187, 340
NsbI	TGCGCA	1 cut(s)	374
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PfeI	GAWTC	1 cut(s)	101
PkrI	GCNGC	3 cut(s)	393, 550, 640
PleI	GAGTC	1 cut(s)	303
PpsI	GAGTC	1 cut(s)	303
Psp1406I	AACGTT	1 cut(s)	443
PspEI	GGTNACC	2 cut(s)	187, 340
PspPI	GGNCC	2 cut(s)	125, 347
PstI	CTGCAG	1 cut(s)	550
RsaI	GTAC	1 cut(s)	541
RsaNI	GTAC	1 cut(s)	540
RseI	CAYNNNNRTG	1 cut(s)	194
SaqAI	TTAA	1 cut(s)	41
SatI	GCNGC	3 cut(s)	392, 549, 639
Sau3AI	GATC	1 cut(s)	616
Sau96I	GGNCC	2 cut(s)	125, 347
SchI	GAGTC	1 cut(s)	304
ScrFI	CCNGG	2 cut(s)	78, 388
SfaNI	GCATC	3 cut(s)	78, 478, 543
SfcI	CTRYAG	1 cut(s)	546
SinI	GGWCC	1 cut(s)	347
SmiMI	CAYNNNNRTG	1 cut(s)	194
Sse9I	AATT	2 cut(s)	318, 364
SsiI	CCGC	2 cut(s)	338, 567
SspMI	CTAG	1 cut(s)	171
StyD4I	CCNGG	2 cut(s)	76, 386
TaaI	ACNGT	1 cut(s)	37
TaiI	ACGT	1 cut(s)	446
TaqI	TCGA	4 cut(s)	99, 223, 298, 447
TasI	AATT	2 cut(s)	318, 364
TfiI	GAWTC	1 cut(s)	101
Tru1I	TTAA	1 cut(s)	41
Tru9I	TTAA	1 cut(s)	41
TscAI	CASTG	1 cut(s)	42
TseFI	GTSAC	3 cut(s)	31, 187, 340
TseI	GCWGC	3 cut(s)	391, 548, 638
Tsp45I	GTSAC	3 cut(s)	31, 187, 340
TspDTI	ATGAA	1 cut(s)	249
TspGWI	ACGGA	2 cut(s)	66, 602
TspRI	CASTG	1 cut(s)	42
VpaK11BI	GGWCC	1 cut(s)	347
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.