Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0001289

Physical Location & Seq

Genomic Coordinates Reverse (-)

12377268 .. 12378005

Gene Structure 738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g13580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGCACGAAAGCTGGTGTTATAAATACCAGGACTACTTCTCCCAAAGCATAACTCAGAAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAACTGATCTGATGGAAAGAAGCGGTAGAGTAGAGCCCCCCACAGTCTTTGGAAAGATAGTCACAGTTCTCAGTATCGATGGCGGCGGAATAAGAGGCCTCATTCCGGCAACCATTCTTGCTTTCCTCGAATCTGAACTTCAGAAACTGGATGGTGAAGATGCAAGGATTGCCGACTATTTTGATGTGATTGCAGGAACAAGCACAGGTGGTCTTGTGACTGCTATGCTTGCAGCCCCAAACGAGAATAACCGCCCACTGTTCGCTGCCAAAGATATTATAGACTTCTATATTAATCAATGCCCTAAAATCTTCCCCCAAAACACTTGGCCAATTTTTCCTAATACGACAAAGATCGATCAAAGCTCTAGCAGGACCAAAATACAATGGCAAGTATTTGCATCGCTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Patatin

Protein Analysis

171

Amino Acids

18.86

Weight (kDa)

4.97

Isoelectric Point (pI)

37.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Patatin	PF01734	57 - 157	8.4e-12	Patatin-like phospholipase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001289)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15580 FvH4_1g15580 FvH4_1g15590 FvH4_1g15590 FvH4_1g15590 FvH4_1g15590 FvH4_2g34812
malus_domestica	MD02G1168000.v1.1 MD02G1168100.v1.1 MD08G1105000.v1.1 MD12G1245800.v1.1 MD15G1280200.v1.1
prunus_persica	Prupe.7G137000_v2.0.a1 Prupe.7G137000_v2.0.a1 Prupe.7G137100_v2.0.a1 Prupe.7G137200_v2.0.a1
pyrus_communis	pycom02g13500 pycom02g13510 pycom02g13520 pycom08g13580 pycom12g22530 pycom15g08060 pycom15g24290
rosa_chinensis	RchiOBHm_Chr2g0104901 RchiOBHm_Chr2g0104911 RchiOBHm_Chr2g0104931
rosa_laevigata	RLG00000010724 RLG00000017367 RLG00000017368 RLG00000017377
rosa_multiflora	Rmu_sc0002645.1_g000011 Rmu_sc0002645.1_g000013 Rmu_sc0002645.1_g000014 Rmu_sc0003419.1_g000003 Rmu_sc0010071.1_g000007 Rmu_sc0030819.1_g000001 Rmu_sc0034169.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138650 Rroxscaffold_2G00138680
rosa_rugosa	Rorug02G0123900 Rorug02G0123900
rosa_samantha	Rh2BG181700 Rh2BG181800 Rh2BG182300 Rh2DG180500 Rh2DG180600 Rh2DG181100 Rh5BG275000 Rh5BG275200 Rh6BG431000 Rh6BG478900
rosa_wichuraiana	Rw2G013700 Rw2G013710 Rw2G013720 Rw2G013730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	21
AciI	CCGC	4 cut(s)	123, 183, 186, 352
AcoI	YGGCCR	1 cut(s)	428
AcuI	CTGAAG	1 cut(s)	224
AfiI	CCNNNNNNNGG	1 cut(s)	205
AjnI	CCWGG	1 cut(s)	27
AluBI	AGCT	2 cut(s)	12, 465
AluI	AGCT	2 cut(s)	12, 465
AlwNI	CAGNNNCTG	1 cut(s)	247
AoxI	GGCC	2 cut(s)	196, 428
ApeKI	GCWGC	2 cut(s)	332, 365
AseI	ATTAAT	1 cut(s)	393
AspS9I	GGNCC	1 cut(s)	474
AsuHPI	GGTGA	1 cut(s)	266
AvaII	GGWCC	1 cut(s)	474
BalI	TGGCCA	1 cut(s)	430
BanII	GRGCYC	1 cut(s)	138
BbvI	GCAGC	2 cut(s)	344, 352
BccI	CCATC	3 cut(s)	106, 173, 245
BciT130I	CCWGG	1 cut(s)	29
BfaI	CTAG	1 cut(s)	468
BisI	GCNGC	3 cut(s)	184, 333, 366
BlsI	GCNGC	3 cut(s)	185, 334, 367
Bme1390I	CCNGG	1 cut(s)	29
Bme18I	GGWCC	1 cut(s)	474
BmgT120I	GGNCC	1 cut(s)	474
BmrFI	CCNGG	1 cut(s)	29
BmsI	GCATC	2 cut(s)	250, 509
Bsa29I	ATCGAT	2 cut(s)	177, 456
BsaXI	ACNNNNNCTCC	2 cut(s)	23, 53
Bsc4I	CCNNNNNNNGG	1 cut(s)	205
Bse1I	ACTGG	1 cut(s)	252
BseBI	CCWGG	1 cut(s)	29
BseCI	ATCGAT	2 cut(s)	177, 456
BseGI	GGATG	1 cut(s)	256
BseLI	CCNNNNNNNGG	1 cut(s)	205
BseMII	CTCAG	2 cut(s)	68, 184
BseNI	ACTGG	1 cut(s)	252
BseXI	GCAGC	2 cut(s)	344, 352
BshFI	GGCC	2 cut(s)	198, 430
BshVI	ATCGAT	2 cut(s)	177, 456
BsiSI	CCGG	1 cut(s)	206
BslI	CCNNNNNNNGG	1 cut(s)	205
BsnI	GGCC	2 cut(s)	198, 430
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp143I	GATC	3 cut(s)	106, 453, 457
BspACI	CCGC	4 cut(s)	123, 183, 186, 352
BspANI	GGCC	2 cut(s)	198, 430
BspCNI	CTCAG	2 cut(s)	67, 183
BspDI	ATCGAT	2 cut(s)	177, 456
BsrI	ACTGG	1 cut(s)	252
BssMI	GATC	3 cut(s)	106, 453, 457
Bst2UI	CCWGG	1 cut(s)	29
Bst4CI	ACNGT	3 cut(s)	145, 166, 360
BstAPI	GCANNNNNTGC	1 cut(s)	269
BstC8I	GCNNGC	1 cut(s)	330
BstDEI	CTNAG	2 cut(s)	54, 170
BstF5I	GGATG	1 cut(s)	256
BstKTI	GATC	3 cut(s)	109, 456, 460
BstMBI	GATC	3 cut(s)	106, 453, 457
BstMWI	GCNNNNNNNGC	2 cut(s)	269, 329
BstNI	CCWGG	1 cut(s)	29
BstSCI	CCNGG	1 cut(s)	27
BstV1I	GCAGC	2 cut(s)	344, 352
Bsu15I	ATCGAT	2 cut(s)	177, 456
BsuRI	GGCC	2 cut(s)	198, 430
BsuTUI	ATCGAT	2 cut(s)	177, 456
BtgZI	GCGATG	1 cut(s)	486
BtsCI	GGATG	1 cut(s)	256
BtsIMutI	CAGTG	1 cut(s)	356
Cac8I	GCNNGC	1 cut(s)	330
CaiI	CAGNNNCTG	1 cut(s)	247
Cfr13I	GGNCC	1 cut(s)	474
ClaI	ATCGAT	2 cut(s)	177, 456
CspCI	CAANNNNNGTGG	2 cut(s)	130, 165
CviJI	RGCY	6 cut(s)	12, 136, 198, 335, 430, 465
CviKI_1	RGCY	6 cut(s)	12, 136, 198, 335, 430, 465
DdeI	CTNAG	2 cut(s)	54, 170
DpnI	GATC	3 cut(s)	108, 455, 459
DpnII	GATC	3 cut(s)	106, 453, 457
EaeI	YGGCCR	1 cut(s)	428
EciI	GGCGGA	1 cut(s)	201
Eco147I	AGGCCT	1 cut(s)	198
Eco24I	GRGCYC	1 cut(s)	138
Eco47I	GGWCC	1 cut(s)	474
Eco57I	CTGAAG	1 cut(s)	224
EcoRII	CCWGG	1 cut(s)	27
EcoT38I	GRGCYC	1 cut(s)	138
FaiI	YATR	5 cut(s)	21, 50, 326, 380, 390
Fnu4HI	GCNGC	3 cut(s)	184, 333, 366
FokI	GGATG	1 cut(s)	263
FriOI	GRGCYC	1 cut(s)	138
Fsp4HI	GCNGC	3 cut(s)	184, 333, 366
FspBI	CTAG	1 cut(s)	468
GluI	GCNGC	3 cut(s)	184, 333, 366
HaeIII	GGCC	2 cut(s)	198, 430
HapII	CCGG	1 cut(s)	206
HinfI	GANTC	1 cut(s)	230
HpaII	CCGG	1 cut(s)	206
HphI	GGTGA	1 cut(s)	266
Hpy188I	TCNGA	4 cut(s)	57, 111, 235, 243
HpyCH4III	ACNGT	3 cut(s)	145, 166, 360
HpyCH4V	TGCA	5 cut(s)	4, 263, 293, 332, 500
HpyF10VI	GCNNNNNNNGC	2 cut(s)	269, 329
HpyF3I	CTNAG	2 cut(s)	54, 170
Kzo9I	GATC	3 cut(s)	106, 453, 457
LpnPI	CCDG	7 cut(s)	14, 41, 219, 233, 279, 291, 457
Lsp1109I	GCAGC	2 cut(s)	344, 352
LweI	GCATC	2 cut(s)	250, 509
MaeI	CTAG	1 cut(s)	468
MaeIII	GTNAC	2 cut(s)	160, 316
MalI	GATC	3 cut(s)	108, 455, 459
MboI	GATC	3 cut(s)	106, 453, 457
MboII	GAAGA	2 cut(s)	269, 403
MhlI	GDGCHC	1 cut(s)	138
MlsI	TGGCCA	1 cut(s)	430
MluCI	AATT	1 cut(s)	432
MluNI	TGGCCA	1 cut(s)	430
MnlI	CCTC	3 cut(s)	188, 209, 236
Mox20I	TGGCCA	1 cut(s)	430
MscI	TGGCCA	1 cut(s)	430
MseI	TTAA	1 cut(s)	393
Msp20I	TGGCCA	1 cut(s)	430
MspI	CCGG	1 cut(s)	206
MspR9I	CCNGG	1 cut(s)	29
MvaI	CCWGG	1 cut(s)	29
MwoI	GCNNNNNNNGC	2 cut(s)	269, 329
NdeII	GATC	3 cut(s)	106, 453, 457
NmuCI	GTSAC	2 cut(s)	160, 316
PceI	AGGCCT	1 cut(s)	198
PfeI	GAWTC	1 cut(s)	230
PkrI	GCNGC	3 cut(s)	185, 334, 367
PshBI	ATTAAT	1 cut(s)	393
PsiI	TTATAA	1 cut(s)	21
Psp6I	CCWGG	1 cut(s)	27
PspGI	CCWGG	1 cut(s)	27
PspPI	GGNCC	1 cut(s)	474
PstNI	CAGNNNCTG	1 cut(s)	247
SaqAI	TTAA	1 cut(s)	393
SatI	GCNGC	3 cut(s)	184, 333, 366
Sau3AI	GATC	3 cut(s)	106, 453, 457
Sau96I	GGNCC	1 cut(s)	474
ScrFI	CCNGG	1 cut(s)	29
SduI	GDGCHC	1 cut(s)	138
SetI	ASST	3 cut(s)	14, 310, 467
SfaNI	GCATC	2 cut(s)	250, 509
SinI	GGWCC	1 cut(s)	474
Sse9I	AATT	1 cut(s)	432
SseBI	AGGCCT	1 cut(s)	198
SsiI	CCGC	4 cut(s)	123, 183, 186, 352
SspMI	CTAG	1 cut(s)	468
StuI	AGGCCT	1 cut(s)	198
StyD4I	CCNGG	1 cut(s)	27
TaaI	ACNGT	3 cut(s)	145, 166, 360
TaqI	TCGA	3 cut(s)	177, 228, 456
TasI	AATT	1 cut(s)	432
TauI	GCSGC	1 cut(s)	186
TfiI	GAWTC	1 cut(s)	230
Tru1I	TTAA	1 cut(s)	393
Tru9I	TTAA	1 cut(s)	393
TscAI	CASTG	1 cut(s)	363
TseFI	GTSAC	2 cut(s)	160, 316
TseI	GCWGC	2 cut(s)	332, 365
Tsp45I	GTSAC	2 cut(s)	160, 316
TspRI	CASTG	1 cut(s)	363
VpaK11BI	GGWCC	1 cut(s)	474
VspI	ATTAAT	1 cut(s)	393
XspI	CTAG	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.