Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002645.1

Orthogroup ID

OG0001289

Physical Location & Seq

Genomic Coordinates Forward (+)

61220 .. 62896

Gene Structure 1677 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002645.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

atggtgacagttctgagcattgatggagggggcattagaggcataattcccagcaccatcctcggctttctcgaatctaagcttcaggatttggatggagcaaatgcaagaattgcagattactttgacataatcgccggaactagcactggtgggttggtcaccaccatgcttacagctcccaacaagaacaatcgacccatgtatgaggcaaaggacatcaacaacttttatttacaacactgtccccagattttccctcaaaaaagtcggaaaaacttcttcacatcgatcacaaatgcaatgaaaccggggccaaaatatgatgggaggtatctgcgctcattgacaaacgggcttcttggtgacctcactctcaagcagactttaaccaatgtggtcattccaacttttgatatcaaacaccttcagcctgtggttttcacaaccattgacgcaaaagaaaattcattgaagaatgcaaatctttcagatgtctgcatcagtacctctgcagctccatcttatctccccccacactactttgaagtcaaggatgagcagggaaatatccgcacgtttgatcttgtcgatggtggggttgctgcaaacaaccctacaatgatagccataagccacataaacagagagatgtcgaagaacaactcagaaccgatggatgcgactcggttgcaagtgctgtcattgggcaccggtgctgccaagtatgcagagaagtacagtgcagtcgaggcatcaaaatggggtttggtgaattggatgtttgataatgggagcacacctttgctggacatttttggagatgcaagttctgatatggttgactttcatgtctccactctcttccagtccctcaatgtcaaggacaattacctaagaattcaggtacctaaaatcacagacataacatgtgttactgcgctattgcttactagacaaggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0044424 GO:0044464 GO:0047372 GO:0052689

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Patatin

Protein Analysis

321

Amino Acids

35.22

Weight (kDa)

6.21

Isoelectric Point (pI)

34.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001289)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15580 FvH4_1g15580 FvH4_1g15590 FvH4_1g15590 FvH4_1g15590 FvH4_1g15590 FvH4_2g34812
malus_domestica	MD02G1168000.v1.1 MD02G1168100.v1.1 MD08G1105000.v1.1 MD12G1245800.v1.1 MD15G1280200.v1.1
prunus_persica	Prupe.7G137000_v2.0.a1 Prupe.7G137000_v2.0.a1 Prupe.7G137100_v2.0.a1 Prupe.7G137200_v2.0.a1
pyrus_communis	pycom02g13500 pycom02g13510 pycom02g13520 pycom08g13580 pycom12g22530 pycom15g08060 pycom15g24290
rosa_chinensis	RchiOBHm_Chr2g0104901 RchiOBHm_Chr2g0104911 RchiOBHm_Chr2g0104931
rosa_laevigata	RLG00000010724 RLG00000017367 RLG00000017368 RLG00000017377
rosa_multiflora	Rmu_sc0002645.1_g000011 Rmu_sc0002645.1_g000013 Rmu_sc0002645.1_g000014 Rmu_sc0003419.1_g000003 Rmu_sc0010071.1_g000007 Rmu_sc0030819.1_g000001 Rmu_sc0034169.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138650 Rroxscaffold_2G00138680
rosa_rugosa	Rorug02G0123900 Rorug02G0123900
rosa_samantha	Rh2BG181700 Rh2BG181800 Rh2BG182300 Rh2DG180500 Rh2DG180600 Rh2DG181100 Rh5BG275000 Rh5BG275200 Rh6BG431000 Rh6BG478900
rosa_wichuraiana	Rw2G013700 Rw2G013710 Rw2G013720 Rw2G013730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	851
Acc65I	GGTACC	1 cut(s)	907
AccB1I	GGYRCC	2 cut(s)	710, 907
AciI	CCGC	1 cut(s)	574
AcsI	RAATTY	2 cut(s)	466, 900
AcuI	CTGAAG	2 cut(s)	68, 413
AfaI	GTAC	3 cut(s)	508, 740, 909
AflIII	ACRYGT	1 cut(s)	929
AgeI	ACCGGT	1 cut(s)	713
AgsI	TTSAA	2 cut(s)	475, 548
AluBI	AGCT	3 cut(s)	82, 179, 518
AluI	AGCT	3 cut(s)	82, 179, 518
Alw21I	GWGCWC	1 cut(s)	800
Alw26I	GTCTC	1 cut(s)	859
AoxI	GGCC	1 cut(s)	314
ApeKI	GCWGC	3 cut(s)	515, 605, 719
ApoI	RAATTY	2 cut(s)	466, 900
AsiGI	ACCGGT	1 cut(s)	713
Asp700I	GAANNNNTTC	1 cut(s)	278
Asp718I	GGTACC	1 cut(s)	907
AspLEI	GCGC	2 cut(s)	342, 943
AspS9I	GGNCC	1 cut(s)	314
AsuC2I	CCSGG	1 cut(s)	312
AsuHPI	GGTGA	4 cut(s)	16, 154, 377, 784
BaeGI	GKGCMC	1 cut(s)	713
BanI	GGYRCC	2 cut(s)	710, 907
Bbv12I	GWGCWC	1 cut(s)	800
BbvI	GCAGC	3 cut(s)	527, 592, 706
BccI	CCATC	7 cut(s)	17, 65, 89, 320, 529, 587, 670
BcgI	CGANNNNNNTGC	4 cut(s)	43, 77, 673, 707
BcnI	CCSGG	1 cut(s)	312
BcoDI	GTCTC	1 cut(s)	859
BfaI	CTAG	2 cut(s)	144, 954
BfmI	CTRYAG	1 cut(s)	513
BisI	GCNGC	3 cut(s)	516, 606, 720
BlsI	GCNGC	3 cut(s)	517, 607, 721
Bme1390I	CCNGG	1 cut(s)	312
BmgT120I	GGNCC	1 cut(s)	314
BmiI	GGNNCC	3 cut(s)	315, 712, 909
BmrFI	CCNGG	1 cut(s)	312
BmsI	GCATC	4 cut(s)	510, 670, 764, 814
BpuEI	CTTGAG	1 cut(s)	362
BpuMI	CCSGG	1 cut(s)	312
Bsa29I	ATCGAT	1 cut(s)	290
BsaJI	CCNNGG	2 cut(s)	61, 311
BsaWI	WCCGGW	1 cut(s)	713
Bse118I	RCCGGY	1 cut(s)	713
Bse1I	ACTGG	2 cut(s)	154, 868
Bse3DI	GCAATG	1 cut(s)	309
BseCI	ATCGAT	1 cut(s)	290
BseDI	CCNNGG	2 cut(s)	61, 311
BseGI	GGATG	5 cut(s)	57, 100, 562, 685, 786
BseMI	GCAATG	1 cut(s)	309
BseMII	CTCAG	2 cut(s)	5, 681
BseNI	ACTGG	2 cut(s)	154, 868
BseSI	GKGCMC	1 cut(s)	713
BseXI	GCAGC	3 cut(s)	527, 592, 706
BseYI	CCCAGC	1 cut(s)	50
BsgI	GTGCAG	1 cut(s)	765
BshFI	GGCC	1 cut(s)	316
BshNI	GGYRCC	2 cut(s)	710, 907
BshTI	ACCGGT	1 cut(s)	713
BshVI	ATCGAT	1 cut(s)	290
BsiHKAI	GWGCWC	1 cut(s)	800
BsiSI	CCGG	3 cut(s)	138, 311, 714
BslFI	GGGAC	2 cut(s)	231, 856
BsmAI	GTCTC	1 cut(s)	859
BsmFI	GGGAC	2 cut(s)	231, 856
BsmI	GAATGC	1 cut(s)	484
BsnI	GGCC	1 cut(s)	316
Bsp1286I	GDGCHC	2 cut(s)	713, 800
Bsp143I	GATC	2 cut(s)	291, 583
BspACI	CCGC	1 cut(s)	574
BspANI	GGCC	1 cut(s)	316
BspCNI	CTCAG	2 cut(s)	6, 680
BspDI	ATCGAT	1 cut(s)	290
BspLI	GGNNCC	3 cut(s)	315, 712, 909
BspMAI	CTGCAG	1 cut(s)	517
BspT107I	GGYRCC	2 cut(s)	710, 907
BsrDI	GCAATG	1 cut(s)	309
BsrFI	RCCGGY	1 cut(s)	713
BsrI	ACTGG	2 cut(s)	154, 868
BssAI	RCCGGY	1 cut(s)	713
BssECI	CCNNGG	2 cut(s)	61, 311
BssMI	GATC	2 cut(s)	291, 583
Bst4CI	ACNGT	3 cut(s)	10, 245, 743
Bst6I	CTCTTC	1 cut(s)	869
BstAPI	GCANNNNNTGC	1 cut(s)	113
BstDEI	CTNAG	4 cut(s)	14, 78, 667, 896
BstEII	GGTNACC	2 cut(s)	160, 365
BstF5I	GGATG	5 cut(s)	57, 100, 562, 685, 786
BstHHI	GCGC	2 cut(s)	342, 943
BstKTI	GATC	2 cut(s)	294, 586
BstMAI	GTCTC	1 cut(s)	859
BstMBI	GATC	2 cut(s)	291, 583
BstMWI	GCNNNNNNNGC	4 cut(s)	39, 113, 728, 752
BstNSI	RCATGY	1 cut(s)	933
BstPI	GGTNACC	2 cut(s)	160, 365
BstSCI	CCNGG	1 cut(s)	310
BstSFI	CTRYAG	1 cut(s)	513
BstSLI	GKGCMC	1 cut(s)	713
BstV1I	GCAGC	3 cut(s)	527, 592, 706
Bsu15I	ATCGAT	1 cut(s)	290
BsuRI	GGCC	1 cut(s)	316
BsuTUI	ATCGAT	1 cut(s)	290
BtsCI	GGATG	5 cut(s)	57, 100, 562, 685, 786
BtsIMutI	CAGTG	3 cut(s)	147, 241, 748
CfoI	GCGC	2 cut(s)	342, 943
Cfr10I	RCCGGY	1 cut(s)	713
Cfr13I	GGNCC	1 cut(s)	314
ClaI	ATCGAT	1 cut(s)	290
CseI	GACGC	1 cut(s)	464
Csp6I	GTAC	3 cut(s)	507, 739, 908
CspAI	ACCGGT	1 cut(s)	713
CviAII	CATG	4 cut(s)	169, 202, 851, 930
CviJI	RGCY	9 cut(s)	66, 82, 179, 316, 358, 433, 518, 629, 636
CviKI_1	RGCY	9 cut(s)	66, 82, 179, 316, 358, 433, 518, 629, 636
CviQI	GTAC	3 cut(s)	507, 739, 908
DdeI	CTNAG	4 cut(s)	14, 78, 667, 896
DpnI	GATC	2 cut(s)	293, 585
DpnII	GATC	2 cut(s)	291, 583
DrdI	GACNNNNNNGTC	1 cut(s)	851
DseDI	GACNNNNNNGTC	1 cut(s)	851
Eam1104I	CTCTTC	1 cut(s)	869
EarI	CTCTTC	1 cut(s)	869
Eco32I	GATATC	1 cut(s)	418
Eco57I	CTGAAG	2 cut(s)	68, 413
Eco91I	GGTNACC	2 cut(s)	160, 365
EcoO65I	GGTNACC	2 cut(s)	160, 365
EcoRI	GAATTC	1 cut(s)	900
EcoRV	GATATC	1 cut(s)	418
FaeI	CATG	4 cut(s)	172, 205, 854, 933
FaqI	GGGAC	2 cut(s)	231, 856
FatI	CATG	4 cut(s)	168, 201, 850, 929
Fnu4HI	GCNGC	3 cut(s)	516, 606, 720
FokI	GGATG	5 cut(s)	44, 107, 569, 692, 793
Fsp4HI	GCNGC	3 cut(s)	516, 606, 720
FspBI	CTAG	2 cut(s)	144, 954
GlaI	GCGC	2 cut(s)	341, 942
GluI	GCNGC	3 cut(s)	516, 606, 720
GsaI	CCCAGC	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	316
HapII	CCGG	3 cut(s)	138, 311, 714
HgaI	GACGC	1 cut(s)	464
HhaI	GCGC	2 cut(s)	342, 943
Hin1II	CATG	4 cut(s)	172, 205, 854, 933
Hin6I	GCGC	2 cut(s)	340, 941
HinP1I	GCGC	2 cut(s)	340, 941
HincII	GTYRAC	1 cut(s)	844
HindII	GTYRAC	1 cut(s)	844
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	2 cut(s)	74, 685
HpaII	CCGG	3 cut(s)	138, 311, 714
HphI	GGTGA	4 cut(s)	16, 154, 377, 784
Hpy166II	GTNNAC	1 cut(s)	844
Hpy188I	TCNGA	5 cut(s)	15, 273, 493, 670, 835
Hpy188III	TCNNGA	2 cut(s)	71, 86
Hpy8I	GTNNAC	1 cut(s)	844
HpyAV	CCTTC	1 cut(s)	437
HpyCH4III	ACNGT	3 cut(s)	10, 245, 743
HpyCH4IV	ACGT	1 cut(s)	578
HpyF10VI	GCNNNNNNNGC	4 cut(s)	39, 113, 728, 752
HpyF3I	CTNAG	4 cut(s)	14, 78, 667, 896
HpySE526I	ACGT	1 cut(s)	578
Hsp92II	CATG	4 cut(s)	172, 205, 854, 933
HspAI	GCGC	2 cut(s)	340, 941
KpnI	GGTACC	1 cut(s)	911
Kzo9I	GATC	2 cut(s)	291, 583
LmnI	GCTCC	4 cut(s)	98, 184, 523, 795
Lsp1109I	GCAGC	3 cut(s)	527, 592, 706
LweI	GCATC	4 cut(s)	510, 670, 764, 814
MaeI	CTAG	2 cut(s)	144, 954
MaeII	ACGT	1 cut(s)	578
MaeIII	GTNAC	4 cut(s)	4, 160, 365, 934
MalI	GATC	2 cut(s)	293, 585
MboI	GATC	2 cut(s)	291, 583
MboII	GAAGA	4 cut(s)	274, 487, 670, 856
MhlI	GDGCHC	2 cut(s)	713, 800
MluCI	AATT	6 cut(s)	45, 111, 466, 775, 889, 900
MlyI	GAGTC	1 cut(s)	679
MmeI	TCCRAC	2 cut(s)	251, 431
MroXI	GAANNNNTTC	1 cut(s)	278
MseI	TTAA	2 cut(s)	389, 964
MslI	CAYNNNNRTG	2 cut(s)	167, 760
MspI	CCGG	3 cut(s)	138, 311, 714
MspR9I	CCNGG	1 cut(s)	312
Mva1269I	GAATGC	1 cut(s)	484
MwoI	GCNNNNNNNGC	4 cut(s)	39, 113, 728, 752
NciI	CCSGG	1 cut(s)	312
NdeII	GATC	2 cut(s)	291, 583
NlaIII	CATG	4 cut(s)	172, 205, 854, 933
NlaIV	GGNNCC	3 cut(s)	315, 712, 909
NmeAIII	GCCGAG	1 cut(s)	42
NmuCI	GTSAC	3 cut(s)	4, 160, 365
NspI	RCATGY	1 cut(s)	933
PciI	ACATGT	1 cut(s)	929
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PctI	GAATGC	1 cut(s)	484
PdmI	GAANNNNTTC	1 cut(s)	278
PfeI	GAWTC	1 cut(s)	74
PinAI	ACCGGT	1 cut(s)	713
PkrI	GCNGC	3 cut(s)	517, 607, 721
PleI	GAGTC	1 cut(s)	679
PpsI	GAGTC	1 cut(s)	679
PscI	ACATGT	1 cut(s)	929
PspEI	GGTNACC	2 cut(s)	160, 365
PspFI	CCCAGC	1 cut(s)	50
PspN4I	GGNNCC	3 cut(s)	315, 712, 909
PspPI	GGNCC	1 cut(s)	314
PstI	CTGCAG	1 cut(s)	517
RsaI	GTAC	3 cut(s)	508, 740, 909
RsaNI	GTAC	3 cut(s)	507, 739, 908
RseI	CAYNNNNRTG	2 cut(s)	167, 760
SaqAI	TTAA	2 cut(s)	389, 964
SatI	GCNGC	3 cut(s)	516, 606, 720
Sau3AI	GATC	2 cut(s)	291, 583
Sau96I	GGNCC	1 cut(s)	314
SchI	GAGTC	1 cut(s)	679
ScrFI	CCNGG	1 cut(s)	312
SduI	GDGCHC	2 cut(s)	713, 800
SfaNI	GCATC	4 cut(s)	510, 670, 764, 814
SfcI	CTRYAG	1 cut(s)	513
SgrAI	CRCCGGYG	1 cut(s)	713
SmiMI	CAYNNNNRTG	2 cut(s)	167, 760
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
Sse9I	AATT	6 cut(s)	45, 111, 466, 775, 889, 900
SsiI	CCGC	1 cut(s)	574
SspMI	CTAG	2 cut(s)	144, 954
StyD4I	CCNGG	1 cut(s)	310
TaaI	ACNGT	3 cut(s)	10, 245, 743
TaiI	ACGT	1 cut(s)	581
TaqI	TCGA	6 cut(s)	72, 196, 290, 591, 656, 750
TasI	AATT	6 cut(s)	45, 111, 466, 775, 889, 900
TatI	WGTACW	1 cut(s)	738
TfiI	GAWTC	1 cut(s)	74
Tru1I	TTAA	2 cut(s)	389, 964
Tru9I	TTAA	2 cut(s)	389, 964
TscAI	CASTG	3 cut(s)	154, 248, 748
TseFI	GTSAC	3 cut(s)	4, 160, 365
TseI	GCWGC	3 cut(s)	515, 605, 719
Tsp45I	GTSAC	3 cut(s)	4, 160, 365
TspDTI	ATGAA	3 cut(s)	320, 459, 839
TspRI	CASTG	3 cut(s)	154, 248, 748
XapI	RAATTY	2 cut(s)	466, 900
XceI	RCATGY	1 cut(s)	933
XmnI	GAANNNNTTC	1 cut(s)	278
XspI	CTAG	2 cut(s)	144, 954

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.