RchiOBHm_Chr2g0104911

Lipolytic acyl hydrolase (LAH)

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
16166970 .. 16167609
640 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47915

Sequence Viewer

Length: 273 bp
ATGTCCATTGGTTTGGCAAAGAGAAAGATGGTGACAGTTCTGAGCATTGATGGAGGTGGCATTAGAGGCATAATTCCCGGCACCATCCTCGGCTTTCTCGAATCTAAGCTTCAGGATTGGGATGGAGAAAATGCAAGAATTGCAGATTATTTTGACATAATCGCCGGAACTAGCACCGGGGGATTGGTCACCACCATGCTTACAGCTCCCAGTAAGAACAACCGGCCATTGTATGAAGCAAAGGACATCAACAACTTTTATTTAGAACACTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

90

Amino Acids

9.77

Weight (kDa)

5.67

Isoelectric Point (pI)

33.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Patatin PF01734 14 - 80 2.4e-10 Patatin-like phospholipase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 80
AcoI YGGCCR 1 cut(s) 224
AcuI CTGAAG 1 cut(s) 95
AluBI AGCT 2 cut(s) 109, 206
AluI AGCT 2 cut(s) 109, 206
AoxI GGCC 1 cut(s) 224
AsuC2I CCSGG 2 cut(s) 78, 178
AsuHPI GGTGA 2 cut(s) 43, 181
BanI GGYRCC 1 cut(s) 80
BccI CCATC 4 cut(s) 22, 44, 92, 116
BcgI CGANNNNNNTGC 2 cut(s) 70, 104
BcnI CCSGG 2 cut(s) 78, 178
BfaI CTAG 1 cut(s) 171
Bme1390I CCNGG 2 cut(s) 78, 178
BmiI GGNNCC 1 cut(s) 82
BmrFI CCNGG 2 cut(s) 78, 178
BmrI ACTGGG 1 cut(s) 204
BmuI ACTGGG 1 cut(s) 204
BpuMI CCSGG 2 cut(s) 78, 178
BsaJI CCNNGG 2 cut(s) 88, 177
Bse118I RCCGGY 1 cut(s) 222
Bse1I ACTGG 1 cut(s) 210
BseDI CCNNGG 2 cut(s) 88, 177
BseGI GGATG 2 cut(s) 84, 127
BseMII CTCAG 1 cut(s) 32
BseNI ACTGG 1 cut(s) 210
BshFI GGCC 1 cut(s) 226
BshNI GGYRCC 1 cut(s) 80
BsiSI CCGG 4 cut(s) 78, 165, 177, 223
BsnI GGCC 1 cut(s) 226
BspANI GGCC 1 cut(s) 226
BspCNI CTCAG 1 cut(s) 33
BspLI GGNNCC 1 cut(s) 82
BspT107I GGYRCC 1 cut(s) 80
BsrFI RCCGGY 1 cut(s) 222
BsrI ACTGG 1 cut(s) 210
BssAI RCCGGY 1 cut(s) 222
BssECI CCNNGG 2 cut(s) 88, 177
Bst4CI ACNGT 1 cut(s) 37
BstAPI GCANNNNNTGC 1 cut(s) 140
BstDEI CTNAG 2 cut(s) 41, 105
BstEII GGTNACC 1 cut(s) 187
BstF5I GGATG 2 cut(s) 84, 127
BstMWI GCNNNNNNNGC 2 cut(s) 66, 140
BstPI GGTNACC 1 cut(s) 187
BstSCI CCNGG 2 cut(s) 76, 176
BstXI CCANNNNNNTGG 1 cut(s) 13
BsuRI GGCC 1 cut(s) 226
BtsCI GGATG 2 cut(s) 84, 127
Cfr10I RCCGGY 1 cut(s) 222
CviAII CATG 1 cut(s) 196
CviJI RGCY 4 cut(s) 93, 109, 206, 226
CviKI_1 RGCY 4 cut(s) 93, 109, 206, 226
DdeI CTNAG 2 cut(s) 41, 105
EaeI YGGCCR 1 cut(s) 224
Eco57I CTGAAG 1 cut(s) 95
Eco91I GGTNACC 1 cut(s) 187
EcoO65I GGTNACC 1 cut(s) 187
FaeI CATG 1 cut(s) 199
FaiI YATR 4 cut(s) 71, 158, 197, 234
FatI CATG 1 cut(s) 195
FokI GGATG 2 cut(s) 71, 134
FspBI CTAG 1 cut(s) 171
HaeIII GGCC 1 cut(s) 226
HapII CCGG 4 cut(s) 78, 165, 177, 223
Hin1II CATG 1 cut(s) 199
HindIII AAGCTT 1 cut(s) 107
HinfI GANTC 1 cut(s) 101
HpaII CCGG 4 cut(s) 78, 165, 177, 223
HphI GGTGA 2 cut(s) 43, 181
Hpy188I TCNGA 1 cut(s) 42
Hpy188III TCNNGA 2 cut(s) 98, 113
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4V TGCA 2 cut(s) 134, 143
HpyF10VI GCNNNNNNNGC 2 cut(s) 66, 140
HpyF3I CTNAG 2 cut(s) 41, 105
Hsp92II CATG 1 cut(s) 199
LmnI GCTCC 1 cut(s) 211
LpnPI CCDG 6 cut(s) 91, 98, 178, 190, 223, 236
MaeI CTAG 1 cut(s) 171
MaeIII GTNAC 2 cut(s) 31, 187
MluCI AATT 2 cut(s) 72, 138
MnlI CCTC 3 cut(s) 47, 59, 98
MslI CAYNNNNRTG 1 cut(s) 194
MspI CCGG 4 cut(s) 78, 165, 177, 223
MspR9I CCNGG 2 cut(s) 78, 178
MwoI GCNNNNNNNGC 2 cut(s) 66, 140
NciI CCSGG 2 cut(s) 78, 178
NlaIII CATG 1 cut(s) 199
NlaIV GGNNCC 1 cut(s) 82
NmeAIII GCCGAG 1 cut(s) 69
NmuCI GTSAC 2 cut(s) 31, 187
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PfeI GAWTC 1 cut(s) 101
PspEI GGTNACC 1 cut(s) 187
PspN4I GGNNCC 1 cut(s) 82
RseI CAYNNNNRTG 1 cut(s) 194
ScrFI CCNGG 2 cut(s) 78, 178
SetI ASST 3 cut(s) 58, 111, 208
SmiMI CAYNNNNRTG 1 cut(s) 194
Sse9I AATT 2 cut(s) 72, 138
SspMI CTAG 1 cut(s) 171
StyD4I CCNGG 2 cut(s) 76, 176
TaaI ACNGT 1 cut(s) 37
TaqI TCGA 1 cut(s) 99
TasI AATT 2 cut(s) 72, 138
TfiI GAWTC 1 cut(s) 101
TseFI GTSAC 2 cut(s) 31, 187
Tsp45I GTSAC 2 cut(s) 31, 187
TspDTI ATGAA 1 cut(s) 249
XspI CTAG 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.