Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0001289

Physical Location & Seq

Genomic Coordinates Reverse (-)

10010825 .. 10012880

Gene Structure 2056 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g13500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGTCGACTGGTTTGGCAAAGAGAAAGATGGTGACAGTGCTAAGCATCGATGGAGGTGGCATTCGGGGCATAATTCCCGGTACCCTCCTAGCCTTTCTTGAATCCAAGCTTCAGCAACTGGATGGCCCCAGTGCAAGAATTGCAGATTATTTCGACATAATTGCCGGAACAAGCACCGGCGGCCTTGTCACCACCATGCTTACAGCTCCCAACAAAGACAATCGACCCATGTACGAAGCAAAGGACATCAACAACTTCTACTTAGATCACACTCCTAAGATTTTCCCTCAAAAAAGTCGGAATGACTTCATGACATCAATAACAAGCATGGTTGGTGCGGTGAAGGGGCCAAAATATGATGGGAAGTACCTGCGGGCATTGACGAAAGGGCTGCTTGGTGACCTCACTCTCAAACAAACCCTAACCAATGTGGTTATTCCAGCTTTTGATATCAATTACCTTCAGCCTGTGATCTTCTCAACCATCGATGCAAAAGAAAAAAGTGAAAAAAATGCTAAGCTTTCGGATATCTGCGTCAGTACCTCTGCTGCTCCCACCTTTCTCCCGGCACATTACTTCGAGGTCAAGGATAACGAGGGAAAAACTCGACCATTTAATCTTGTCGATGGTGGTGTTGCTGCAAACAATCCTACGATGATGGCCATAAGCCATATCAACAGAGAGATGTTGAAGAACAATTCGGAGCCAATGTACGCAACGAGGTTGCAAGTGTTGTCGTTGGGCACCGGCTCAGCCAAACATGAAGGGAAGTACGATGCAGCTAGGGCTTCCAGATGGGGTTTGCTCAATTGGATGTTTGACAATGGGAGCACACCTTTGGTAGACATTTTTGGTGATGCAAGTTCTGATATGGTTGACTTTCATGTGTCCACCCTCTTCGACTCCCTTCAGGTCAAGGACAACTATCTACGTATTCAGGAAGACTCATTGATCGGCGATGAAGCATCGGTTGATATAGCGACTGAGAAGAATCTAAGGAGGCTTGTGGAGATTGGGGAGGCACTATTGAAGAAGCAAGTGTCACAAGTGCAATTCGATACTGGAAGGTATAAGACATCGGAGGGAGAGGGTACCTACGAAGACGCATTAACCATTTTTGCTAAAACGCTTTCGGCGGGAAGGAAGCTCAATAAAACAACTCAAAGTCCAATAGAAATAGCCATATCTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0044424 GO:0044464 GO:0047372 GO:0052689

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Patatin

Protein Analysis

398

Amino Acids

43.52

Weight (kDa)

6.55

Isoelectric Point (pI)

37.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001289)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15580 FvH4_1g15580 FvH4_1g15590 FvH4_1g15590 FvH4_1g15590 FvH4_1g15590 FvH4_2g34812
malus_domestica	MD02G1168000.v1.1 MD02G1168100.v1.1 MD08G1105000.v1.1 MD12G1245800.v1.1 MD15G1280200.v1.1
prunus_persica	Prupe.7G137000_v2.0.a1 Prupe.7G137000_v2.0.a1 Prupe.7G137100_v2.0.a1 Prupe.7G137200_v2.0.a1
pyrus_communis	pycom02g13500 pycom02g13510 pycom02g13520 pycom08g13580 pycom12g22530 pycom15g08060 pycom15g24290
rosa_chinensis	RchiOBHm_Chr2g0104901 RchiOBHm_Chr2g0104911 RchiOBHm_Chr2g0104931
rosa_laevigata	RLG00000010724 RLG00000017367 RLG00000017368 RLG00000017377
rosa_multiflora	Rmu_sc0002645.1_g000011 Rmu_sc0002645.1_g000013 Rmu_sc0002645.1_g000014 Rmu_sc0003419.1_g000003 Rmu_sc0010071.1_g000007 Rmu_sc0030819.1_g000001 Rmu_sc0034169.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138650 Rroxscaffold_2G00138680
rosa_rugosa	Rorug02G0123900 Rorug02G0123900
rosa_samantha	Rh2BG181700 Rh2BG181800 Rh2BG182300 Rh2DG180500 Rh2DG180600 Rh2DG181100 Rh5BG275000 Rh5BG275200 Rh6BG431000 Rh6BG478900
rosa_wichuraiana	Rw2G013700 Rw2G013710 Rw2G013720 Rw2G013730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	378
Acc65I	GGTACC	2 cut(s)	80, 1091
AccB1I	GGYRCC	3 cut(s)	80, 743, 1091
AccI	GTMKAC	2 cut(s)	5, 843
AciI	CCGC	4 cut(s)	180, 338, 373, 1136
AcoI	YGGCCR	1 cut(s)	660
AcuI	CTGAAG	3 cut(s)	95, 446, 893
AfaI	GTAC	7 cut(s)	82, 233, 368, 541, 713, 773, 1093
AgsI	TTSAA	3 cut(s)	101, 691, 1030
AluBI	AGCT	6 cut(s)	109, 206, 443, 520, 782, 1147
AluI	AGCT	6 cut(s)	109, 206, 443, 520, 782, 1147
Alw21I	GWGCWC	1 cut(s)	833
AlwNI	CAGNNNCTG	1 cut(s)	118
AoxI	GGCC	4 cut(s)	124, 181, 347, 660
ApeKI	GCWGC	4 cut(s)	391, 548, 638, 779
Asp700I	GAANNNNTTC	1 cut(s)	305
Asp718I	GGTACC	2 cut(s)	80, 1091
AspS9I	GGNCC	2 cut(s)	125, 347
AsuC2I	CCSGG	2 cut(s)	78, 566
AsuHPI	GGTGA	5 cut(s)	43, 181, 352, 410, 866
BaeGI	GKGCMC	1 cut(s)	746
BalI	TGGCCA	1 cut(s)	662
BanI	GGYRCC	3 cut(s)	80, 743, 1091
BbsI	GAAGAC	2 cut(s)	948, 1107
Bbv12I	GWGCWC	1 cut(s)	833
BbvI	GCAGC	4 cut(s)	378, 535, 625, 791
BccI	CCATC	8 cut(s)	22, 44, 116, 353, 491, 620, 652, 789
BcgI	CGANNNNNNTGC	4 cut(s)	143, 177, 373, 407
BcnI	CCSGG	2 cut(s)	78, 566
BfaI	CTAG	2 cut(s)	89, 783
BfuAI	ACCTGC	1 cut(s)	378
BisI	GCNGC	5 cut(s)	181, 392, 549, 639, 780
BlpI	GCTNAGC	3 cut(s)	41, 516, 751
BlsI	GCNGC	5 cut(s)	182, 393, 550, 640, 781
Bme1390I	CCNGG	2 cut(s)	78, 566
BmgT120I	GGNCC	2 cut(s)	125, 347
BmiI	GGNNCC	6 cut(s)	82, 127, 348, 705, 745, 1093
BmrFI	CCNGG	2 cut(s)	78, 566
BmrI	ACTGGG	1 cut(s)	123
BmsI	GCATC	5 cut(s)	54, 478, 766, 847, 974
BmuI	ACTGGG	1 cut(s)	123
BpiI	GAAGAC	2 cut(s)	948, 1107
Bpu1102I	GCTNAGC	3 cut(s)	41, 516, 751
BpuMI	CCSGG	2 cut(s)	78, 566
Bsa29I	ATCGAT	2 cut(s)	48, 486
BsaAI	YACGTR	1 cut(s)	932
BsaXI	ACNNNNNCTCC	2 cut(s)	695, 725
Bse118I	RCCGGY	2 cut(s)	176, 746
Bse1I	ACTGG	4 cut(s)	13, 123, 129, 1066
BseCI	ATCGAT	2 cut(s)	48, 486
BseGI	GGATG	2 cut(s)	127, 819
BseMII	CTCAG	2 cut(s)	765, 975
BseNI	ACTGG	4 cut(s)	13, 123, 129, 1066
BseSI	GKGCMC	1 cut(s)	746
BseXI	GCAGC	4 cut(s)	378, 535, 625, 791
BshFI	GGCC	4 cut(s)	126, 183, 349, 662
BshNI	GGYRCC	3 cut(s)	80, 743, 1091
BshVI	ATCGAT	2 cut(s)	48, 486
BsiHKAI	GWGCWC	1 cut(s)	833
BsiSI	CCGG	5 cut(s)	78, 165, 177, 566, 747
BsmI	GAATGC	1 cut(s)	60
BsnI	GGCC	4 cut(s)	126, 183, 349, 662
Bsp1286I	GDGCHC	2 cut(s)	746, 833
Bsp143I	GATC	3 cut(s)	265, 471, 951
Bsp1720I	GCTNAGC	3 cut(s)	41, 516, 751
BspACI	CCGC	4 cut(s)	180, 338, 373, 1136
BspANI	GGCC	4 cut(s)	126, 183, 349, 662
BspCNI	CTCAG	2 cut(s)	764, 976
BspDI	ATCGAT	2 cut(s)	48, 486
BspHI	TCATGA	1 cut(s)	309
BspLI	GGNNCC	6 cut(s)	82, 127, 348, 705, 745, 1093
BspMI	ACCTGC	1 cut(s)	378
BspT107I	GGYRCC	3 cut(s)	80, 743, 1091
BsrFI	RCCGGY	2 cut(s)	176, 746
BsrI	ACTGG	4 cut(s)	13, 123, 129, 1066
BssAI	RCCGGY	2 cut(s)	176, 746
BssMI	GATC	3 cut(s)	265, 471, 951
Bst4CI	ACNGT	1 cut(s)	37
Bst6I	CTCTTC	1 cut(s)	902
BstAPI	GCANNNNNTGC	1 cut(s)	140
BstBAI	YACGTR	1 cut(s)	932
BstC8I	GCNNGC	1 cut(s)	375
BstDEI	CTNAG	7 cut(s)	41, 262, 276, 516, 751, 984, 995
BstEII	GGTNACC	1 cut(s)	398
BstF5I	GGATG	2 cut(s)	127, 819
BstKTI	GATC	3 cut(s)	268, 474, 954
BstMBI	GATC	3 cut(s)	265, 471, 951
BstMWI	GCNNNNNNNGC	4 cut(s)	66, 140, 180, 785
BstPI	GGTNACC	1 cut(s)	398
BstSCI	CCNGG	2 cut(s)	76, 564
BstSLI	GKGCMC	1 cut(s)	746
BstSNI	TACGTA	1 cut(s)	932
BstV1I	GCAGC	4 cut(s)	378, 535, 625, 791
BstV2I	GAAGAC	2 cut(s)	948, 1107
Bsu15I	ATCGAT	2 cut(s)	48, 486
BsuRI	GGCC	4 cut(s)	126, 183, 349, 662
BsuTUI	ATCGAT	2 cut(s)	48, 486
BtgZI	GCGATG	1 cut(s)	972
BtsCI	GGATG	2 cut(s)	127, 819
BtsIMutI	CAGTG	2 cut(s)	42, 136
BveI	ACCTGC	1 cut(s)	378
Cac8I	GCNNGC	1 cut(s)	375
CaiI	CAGNNNCTG	1 cut(s)	118
CciI	TCATGA	1 cut(s)	309
Cfr10I	RCCGGY	2 cut(s)	176, 746
Cfr13I	GGNCC	2 cut(s)	125, 347
ClaI	ATCGAT	2 cut(s)	48, 486
CseI	GACGC	2 cut(s)	523, 1112
Csp6I	GTAC	7 cut(s)	81, 232, 367, 540, 712, 772, 1092
CviAII	CATG	6 cut(s)	196, 229, 310, 328, 761, 884
CviQI	GTAC	7 cut(s)	81, 232, 367, 540, 712, 772, 1092
DdeI	CTNAG	7 cut(s)	41, 262, 276, 516, 751, 984, 995
DpnI	GATC	3 cut(s)	267, 473, 953
DpnII	GATC	3 cut(s)	265, 471, 951
EaeI	YGGCCR	1 cut(s)	660
Eam1104I	CTCTTC	1 cut(s)	902
EarI	CTCTTC	1 cut(s)	902
Eco105I	TACGTA	1 cut(s)	932
Eco32I	GATATC	2 cut(s)	451, 529
Eco57I	CTGAAG	3 cut(s)	95, 446, 893
Eco91I	GGTNACC	1 cut(s)	398
EcoO65I	GGTNACC	1 cut(s)	398
EcoRV	GATATC	2 cut(s)	451, 529
FaeI	CATG	6 cut(s)	199, 232, 313, 331, 764, 887
FalI	AAGNNNNNCTT	2 cut(s)	378, 410
FatI	CATG	6 cut(s)	195, 228, 309, 327, 760, 883
FauI	CCCGC	2 cut(s)	366, 1129
FblI	GTMKAC	2 cut(s)	5, 843
Fnu4HI	GCNGC	5 cut(s)	181, 392, 549, 639, 780
FokI	GGATG	2 cut(s)	134, 826
Fsp4HI	GCNGC	5 cut(s)	181, 392, 549, 639, 780
FspBI	CTAG	2 cut(s)	89, 783
GluI	GCNGC	5 cut(s)	181, 392, 549, 639, 780
HaeIII	GGCC	4 cut(s)	126, 183, 349, 662
HapII	CCGG	5 cut(s)	78, 165, 177, 566, 747
HgaI	GACGC	2 cut(s)	523, 1112
Hin1II	CATG	6 cut(s)	199, 232, 313, 331, 764, 887
HincII	GTYRAC	2 cut(s)	6, 877
HindII	GTYRAC	2 cut(s)	6, 877
HindIII	AAGCTT	2 cut(s)	107, 518
HinfI	GANTC	4 cut(s)	101, 902, 944, 991
HpaII	CCGG	5 cut(s)	78, 165, 177, 566, 747
HphI	GGTGA	5 cut(s)	43, 181, 352, 410, 866
Hpy166II	GTNNAC	4 cut(s)	6, 844, 877, 891
Hpy188I	TCNGA	5 cut(s)	300, 526, 703, 868, 1081
Hpy188III	TCNNGA	4 cut(s)	98, 310, 792, 938
Hpy8I	GTNNAC	4 cut(s)	6, 844, 877, 891
HpyAV	CCTTC	6 cut(s)	337, 470, 758, 917, 1059, 1134
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4IV	ACGT	1 cut(s)	931
HpyCH4V	TGCA	8 cut(s)	134, 143, 491, 641, 727, 779, 860, 1051
HpyF10VI	GCNNNNNNNGC	4 cut(s)	66, 140, 180, 785
HpyF3I	CTNAG	7 cut(s)	41, 262, 276, 516, 751, 984, 995
HpySE526I	ACGT	1 cut(s)	931
Hsp92II	CATG	6 cut(s)	199, 232, 313, 331, 764, 887
KpnI	GGTACC	2 cut(s)	84, 1095
Kzo9I	GATC	3 cut(s)	265, 471, 951
LmnI	GCTCC	4 cut(s)	211, 556, 703, 828
Lsp1109I	GCAGC	4 cut(s)	378, 535, 625, 791
LweI	GCATC	5 cut(s)	54, 478, 766, 847, 974
MaeI	CTAG	2 cut(s)	89, 783
MaeII	ACGT	1 cut(s)	931
MaeIII	GTNAC	4 cut(s)	31, 187, 398, 1041
MalI	GATC	3 cut(s)	267, 473, 953
MboI	GATC	3 cut(s)	265, 471, 951
MboII	GAAGA	7 cut(s)	466, 703, 889, 953, 1000, 1042, 1112
MfeI	CAATTG	1 cut(s)	808
MhlI	GDGCHC	2 cut(s)	746, 833
MlsI	TGGCCA	1 cut(s)	662
MluCI	AATT	8 cut(s)	72, 138, 159, 454, 697, 808, 1052, 1189
MluNI	TGGCCA	1 cut(s)	662
MlyI	GAGTC	2 cut(s)	896, 938
MmeI	TCCRAC	1 cut(s)	278
Mox20I	TGGCCA	1 cut(s)	662
MroXI	GAANNNNTTC	1 cut(s)	305
MscI	TGGCCA	1 cut(s)	662
MseI	TTAA	3 cut(s)	615, 1109, 1192
MslI	CAYNNNNRTG	1 cut(s)	194
Msp20I	TGGCCA	1 cut(s)	662
MspI	CCGG	5 cut(s)	78, 165, 177, 566, 747
MspR9I	CCNGG	2 cut(s)	78, 566
MunI	CAATTG	1 cut(s)	808
Mva1269I	GAATGC	1 cut(s)	60
MwoI	GCNNNNNNNGC	4 cut(s)	66, 140, 180, 785
NciI	CCSGG	2 cut(s)	78, 566
NdeII	GATC	3 cut(s)	265, 471, 951
NlaIII	CATG	6 cut(s)	199, 232, 313, 331, 764, 887
NlaIV	GGNNCC	6 cut(s)	82, 127, 348, 705, 745, 1093
NmuCI	GTSAC	4 cut(s)	31, 187, 398, 1041
PagI	TCATGA	1 cut(s)	309
PctI	GAATGC	1 cut(s)	60
PdmI	GAANNNNTTC	1 cut(s)	305
PfeI	GAWTC	2 cut(s)	101, 991
PkrI	GCNGC	5 cut(s)	182, 393, 550, 640, 781
PleI	GAGTC	2 cut(s)	896, 938
PpsI	GAGTC	2 cut(s)	896, 938
Ppu21I	YACGTR	1 cut(s)	932
PspEI	GGTNACC	1 cut(s)	398
PspN4I	GGNNCC	6 cut(s)	82, 127, 348, 705, 745, 1093
PspPI	GGNCC	2 cut(s)	125, 347
PstNI	CAGNNNCTG	1 cut(s)	118
RsaI	GTAC	7 cut(s)	82, 233, 368, 541, 713, 773, 1093
RsaNI	GTAC	7 cut(s)	81, 232, 367, 540, 712, 772, 1092
RseI	CAYNNNNRTG	1 cut(s)	194
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	3 cut(s)	615, 1109, 1192
SatI	GCNGC	5 cut(s)	181, 392, 549, 639, 780
Sau3AI	GATC	3 cut(s)	265, 471, 951
Sau96I	GGNCC	2 cut(s)	125, 347
SchI	GAGTC	2 cut(s)	896, 938
ScrFI	CCNGG	2 cut(s)	78, 566
SduI	GDGCHC	2 cut(s)	746, 833
SfaNI	GCATC	5 cut(s)	54, 478, 766, 847, 974
SgrAI	CRCCGGYG	1 cut(s)	176
SmiMI	CAYNNNNRTG	1 cut(s)	194
SnaBI	TACGTA	1 cut(s)	932
Sse9I	AATT	8 cut(s)	72, 138, 159, 454, 697, 808, 1052, 1189
SsiI	CCGC	4 cut(s)	180, 338, 373, 1136
SspMI	CTAG	2 cut(s)	89, 783
StyD4I	CCNGG	2 cut(s)	76, 564
TaaI	ACNGT	1 cut(s)	37
TaiI	ACGT	1 cut(s)	934
TasI	AATT	8 cut(s)	72, 138, 159, 454, 697, 808, 1052, 1189
TauI	GCSGC	1 cut(s)	183
TfiI	GAWTC	2 cut(s)	101, 991
Tru1I	TTAA	3 cut(s)	615, 1109, 1192
Tru9I	TTAA	3 cut(s)	615, 1109, 1192
TscAI	CASTG	2 cut(s)	42, 136
TseFI	GTSAC	4 cut(s)	31, 187, 398, 1041
TseI	GCWGC	4 cut(s)	391, 548, 638, 779
Tsp45I	GTSAC	4 cut(s)	31, 187, 398, 1041
TspDTI	ATGAA	4 cut(s)	298, 777, 872, 975
TspRI	CASTG	2 cut(s)	42, 136
XmiI	GTMKAC	2 cut(s)	5, 843
XmnI	GAANNNNTTC	1 cut(s)	305
XspI	CTAG	2 cut(s)	89, 783

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.