Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001289

Physical Location & Seq

Genomic Coordinates Forward (+)

65059907 .. 65060353

Gene Structure 447 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG431000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGCTCAGCTTCTTAGAGTCCGAGCTTCAGAAGCTGGATGGTGAAGATGCAAGACTAGCAGATTATTTTGATGTAATTGCAGGGACCAGCACAGGTGGTCTTGTCACTGCTATGCTTACTGCCCCAGATGAAAACAACCGTCCAATATTTGCTGCTAAAGATATTAACGATTTTTATCTTGAACACTGTCCTAAAATCTTCCCCCAAGACAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Patatin

Protein Analysis

71

Amino Acids

7.94

Weight (kDa)

4.29

Isoelectric Point (pI)

34.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Patatin	PF01734	12 - 59	3.6e-06	Patatin-like phospholipase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001289)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15580 FvH4_1g15580 FvH4_1g15590 FvH4_1g15590 FvH4_1g15590 FvH4_1g15590 FvH4_2g34812
malus_domestica	MD02G1168000.v1.1 MD02G1168100.v1.1 MD08G1105000.v1.1 MD12G1245800.v1.1 MD15G1280200.v1.1
prunus_persica	Prupe.7G137000_v2.0.a1 Prupe.7G137000_v2.0.a1 Prupe.7G137100_v2.0.a1 Prupe.7G137200_v2.0.a1
pyrus_communis	pycom02g13500 pycom02g13510 pycom02g13520 pycom08g13580 pycom12g22530 pycom15g08060 pycom15g24290
rosa_chinensis	RchiOBHm_Chr2g0104901 RchiOBHm_Chr2g0104911 RchiOBHm_Chr2g0104931
rosa_laevigata	RLG00000010724 RLG00000017367 RLG00000017368 RLG00000017377
rosa_multiflora	Rmu_sc0002645.1_g000011 Rmu_sc0002645.1_g000013 Rmu_sc0002645.1_g000014 Rmu_sc0003419.1_g000003 Rmu_sc0010071.1_g000007 Rmu_sc0030819.1_g000001 Rmu_sc0034169.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138650 Rroxscaffold_2G00138680
rosa_rugosa	Rorug02G0123900 Rorug02G0123900
rosa_samantha	Rh2BG181700 Rh2BG181800 Rh2BG182300 Rh2DG180500 Rh2DG180600 Rh2DG181100 Rh5BG275000 Rh5BG275200 Rh6BG431000 Rh6BG478900
rosa_wichuraiana	Rw2G013700 Rw2G013710 Rw2G013720 Rw2G013730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	11
AfiI	CCNNNNNNNGG	1 cut(s)	210
AgsI	TTSAA	1 cut(s)	182
AluBI	AGCT	3 cut(s)	9, 25, 34
AluI	AGCT	3 cut(s)	9, 25, 34
AlwNI	CAGNNNCTG	1 cut(s)	34
ApeKI	GCWGC	1 cut(s)	152
AspS9I	GGNCC	1 cut(s)	84
AsuHPI	GGTGA	1 cut(s)	53
AvaII	GGWCC	1 cut(s)	84
BbvI	GCAGC	1 cut(s)	139
BccI	CCATC	1 cut(s)	32
BfaI	CTAG	1 cut(s)	56
BisI	GCNGC	1 cut(s)	153
BlpI	GCTNAGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	154
Bme18I	GGWCC	1 cut(s)	84
BmgT120I	GGNCC	1 cut(s)	84
BmiI	GGNNCC	1 cut(s)	85
BmsI	GCATC	1 cut(s)	37
Bpu1102I	GCTNAGC	1 cut(s)	5
BsaBI	GATNNNNATC	1 cut(s)	174
Bsc4I	CCNNNNNNNGG	1 cut(s)	210
Bse8I	GATNNNNATC	1 cut(s)	174
BseGI	GGATG	1 cut(s)	43
BseJI	GATNNNNATC	1 cut(s)	174
BseLI	CCNNNNNNNGG	1 cut(s)	210
BseMII	CTCAG	1 cut(s)	19
BseXI	GCAGC	1 cut(s)	139
BslFI	GGGAC	1 cut(s)	97
BslI	CCNNNNNNNGG	1 cut(s)	210
BsmFI	GGGAC	1 cut(s)	97
Bsp1720I	GCTNAGC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	18
BspLI	GGNNCC	1 cut(s)	85
Bst4CI	ACNGT	2 cut(s)	140, 188
BstDEI	CTNAG	2 cut(s)	5, 13
BstF5I	GGATG	1 cut(s)	43
BstMWI	GCNNNNNNNGC	2 cut(s)	31, 56
BstV1I	GCAGC	1 cut(s)	139
BtsCI	GGATG	1 cut(s)	43
BtsI	GCAGTG	1 cut(s)	105
BtsIMutI	CAGTG	2 cut(s)	105, 184
CaiI	CAGNNNCTG	1 cut(s)	34
Cfr13I	GGNCC	1 cut(s)	84
CviJI	RGCY	3 cut(s)	9, 25, 34
CviKI_1	RGCY	3 cut(s)	9, 25, 34
DdeI	CTNAG	2 cut(s)	5, 13
Eco47I	GGWCC	1 cut(s)	84
Eco57I	CTGAAG	1 cut(s)	11
FaiI	YATR	1 cut(s)	113
FaqI	GGGAC	1 cut(s)	97
Fnu4HI	GCNGC	1 cut(s)	153
FokI	GGATG	1 cut(s)	50
Fsp4HI	GCNGC	1 cut(s)	153
FspBI	CTAG	1 cut(s)	56
GluI	GCNGC	1 cut(s)	153
HinfI	GANTC	1 cut(s)	17
HphI	GGTGA	1 cut(s)	53
Hpy188I	TCNGA	2 cut(s)	22, 30
Hpy188III	TCNNGA	1 cut(s)	179
HpyCH4III	ACNGT	2 cut(s)	140, 188
HpyCH4V	TGCA	2 cut(s)	50, 80
HpyF10VI	GCNNNNNNNGC	2 cut(s)	31, 56
HpyF3I	CTNAG	2 cut(s)	5, 13
LpnPI	CCDG	6 cut(s)	20, 66, 78, 100, 138, 196
Lsp1109I	GCAGC	1 cut(s)	139
LweI	GCATC	1 cut(s)	37
MaeI	CTAG	1 cut(s)	56
MaeIII	GTNAC	1 cut(s)	103
MboII	GAAGA	2 cut(s)	56, 190
MluCI	AATT	1 cut(s)	75
MlyI	GAGTC	1 cut(s)	26
MseI	TTAA	1 cut(s)	165
MslI	CAYNNNNRTG	1 cut(s)	110
MwoI	GCNNNNNNNGC	2 cut(s)	31, 56
NlaIV	GGNNCC	1 cut(s)	85
NmuCI	GTSAC	1 cut(s)	103
PkrI	GCNGC	1 cut(s)	154
PleI	GAGTC	1 cut(s)	25
PpsI	GAGTC	1 cut(s)	25
PspN4I	GGNNCC	1 cut(s)	85
PspPI	GGNCC	1 cut(s)	84
PstNI	CAGNNNCTG	1 cut(s)	34
RseI	CAYNNNNRTG	1 cut(s)	110
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	1 cut(s)	153
Sau96I	GGNCC	1 cut(s)	84
SchI	GAGTC	1 cut(s)	26
SetI	ASST	5 cut(s)	11, 27, 36, 97, 215
SfaNI	GCATC	1 cut(s)	37
SinI	GGWCC	1 cut(s)	84
SmiMI	CAYNNNNRTG	1 cut(s)	110
Sse9I	AATT	1 cut(s)	75
SspI	AATATT	1 cut(s)	147
SspMI	CTAG	1 cut(s)	56
TaaI	ACNGT	2 cut(s)	140, 188
TasI	AATT	1 cut(s)	75
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TscAI	CASTG	2 cut(s)	112, 191
TseFI	GTSAC	1 cut(s)	103
TseI	GCWGC	1 cut(s)	152
Tsp45I	GTSAC	1 cut(s)	103
TspDTI	ATGAA	1 cut(s)	144
TspRI	CASTG	2 cut(s)	112, 191
VpaK11BI	GGWCC	1 cut(s)	84
XspI	CTAG	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.