Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003419.1

Orthogroup ID

OG0001289

Physical Location & Seq

Genomic Coordinates Forward (+)

6410 .. 7473

Gene Structure 1064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003419.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

atggtgacagttctgagcattgatggaggtggcattagaggcataattcccggcaccatcctcggctttctcgaatctaagcttcaggattgggatggagcaaatgcaagaattgcagattattttgacataatcgccggaactagcaccgggggattggtcaccaccatgcttacagctcccaataagaacaaccggcccatgtatgaagcaaaggacatcaacaacttttatttagaacactgtccccagattttccctcaaaaaagtcggaagaagaaaaacttcttcacatcgataacaaatgcaatgaagcgggggccaaaatacgatgggatgtatctgcgctcattgataaacgggctgcttgctgatctcactctcaagcagactttaaccaatgtggtcattccaagttttgatatcaaacaccttcagcctgtggttaaatttatggtagtacaggcaaaagaaaattcattgaagaacgcaaagctttcagatgtctgcatcagtacctctgcagctccatattatctccccccacactacttcgaagtcaaggatgaccagggaaatatccgcacgtttgatcttgtcgatggtggggttgctgcaaataatcctgttagtagttttgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0044424 GO:0044464 GO:0047372 GO:0052689

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Patatin

Protein Analysis

214

Amino Acids

23.61

Weight (kDa)

8.97

Isoelectric Point (pI)

36.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001289)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15580 FvH4_1g15580 FvH4_1g15590 FvH4_1g15590 FvH4_1g15590 FvH4_1g15590 FvH4_2g34812
malus_domestica	MD02G1168000.v1.1 MD02G1168100.v1.1 MD08G1105000.v1.1 MD12G1245800.v1.1 MD15G1280200.v1.1
prunus_persica	Prupe.7G137000_v2.0.a1 Prupe.7G137000_v2.0.a1 Prupe.7G137100_v2.0.a1 Prupe.7G137200_v2.0.a1
pyrus_communis	pycom02g13500 pycom02g13510 pycom02g13520 pycom08g13580 pycom12g22530 pycom15g08060 pycom15g24290
rosa_chinensis	RchiOBHm_Chr2g0104901 RchiOBHm_Chr2g0104911 RchiOBHm_Chr2g0104931
rosa_laevigata	RLG00000010724 RLG00000017367 RLG00000017368 RLG00000017377
rosa_multiflora	Rmu_sc0002645.1_g000011 Rmu_sc0002645.1_g000013 Rmu_sc0002645.1_g000014 Rmu_sc0003419.1_g000003 Rmu_sc0010071.1_g000007 Rmu_sc0030819.1_g000001 Rmu_sc0034169.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138650 Rroxscaffold_2G00138680
rosa_rugosa	Rorug02G0123900 Rorug02G0123900
rosa_samantha	Rh2BG181700 Rh2BG181800 Rh2BG182300 Rh2DG180500 Rh2DG180600 Rh2DG181100 Rh5BG275000 Rh5BG275200 Rh6BG431000 Rh6BG478900
rosa_wichuraiana	Rw2G013700 Rw2G013710 Rw2G013720 Rw2G013730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	53
AciI	CCGC	2 cut(s)	316, 583
AcsI	RAATTY	2 cut(s)	449, 475
AcuI	CTGAAG	2 cut(s)	68, 419
AfaI	GTAC	2 cut(s)	462, 517
AgsI	TTSAA	1 cut(s)	484
AjnI	CCWGG	1 cut(s)	570
AluBI	AGCT	4 cut(s)	82, 179, 496, 527
AluI	AGCT	4 cut(s)	82, 179, 496, 527
AoxI	GGCC	2 cut(s)	197, 320
ApeKI	GCWGC	3 cut(s)	364, 524, 614
ApoI	RAATTY	2 cut(s)	449, 475
Asp700I	GAANNNNTTC	1 cut(s)	284
AspLEI	GCGC	1 cut(s)	348
AspS9I	GGNCC	2 cut(s)	198, 320
AsuC2I	CCSGG	2 cut(s)	51, 151
AsuHPI	GGTGA	2 cut(s)	16, 154
AsuII	TTCGAA	1 cut(s)	555
BanI	GGYRCC	1 cut(s)	53
BbvI	GCAGC	3 cut(s)	351, 536, 601
BccI	CCATC	5 cut(s)	17, 65, 89, 326, 596
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BciT130I	CCWGG	1 cut(s)	572
BcnI	CCSGG	2 cut(s)	51, 151
BfaI	CTAG	1 cut(s)	144
BfmI	CTRYAG	1 cut(s)	522
BisI	GCNGC	3 cut(s)	365, 525, 615
BlsI	GCNGC	3 cut(s)	366, 526, 616
Bme1390I	CCNGG	3 cut(s)	51, 151, 572
BmgT120I	GGNCC	2 cut(s)	198, 320
BmiI	GGNNCC	2 cut(s)	55, 321
BmrFI	CCNGG	3 cut(s)	51, 151, 572
BmsI	GCATC	1 cut(s)	519
Bpu14I	TTCGAA	1 cut(s)	555
BpuEI	CTTGAG	1 cut(s)	368
BpuMI	CCSGG	2 cut(s)	51, 151
Bsa29I	ATCGAT	1 cut(s)	296
BsaJI	CCNNGG	3 cut(s)	61, 150, 571
Bse118I	RCCGGY	1 cut(s)	195
Bse3DI	GCAATG	1 cut(s)	315
BseBI	CCWGG	1 cut(s)	572
BseCI	ATCGAT	1 cut(s)	296
BseDI	CCNNGG	3 cut(s)	61, 150, 571
BseGI	GGATG	4 cut(s)	57, 100, 342, 571
BseMI	GCAATG	1 cut(s)	315
BseMII	CTCAG	1 cut(s)	5
BseXI	GCAGC	3 cut(s)	351, 536, 601
BshFI	GGCC	2 cut(s)	199, 322
BshNI	GGYRCC	1 cut(s)	53
BshVI	ATCGAT	1 cut(s)	296
BsiSI	CCGG	4 cut(s)	51, 138, 150, 196
BslFI	GGGAC	1 cut(s)	231
BsmFI	GGGAC	1 cut(s)	231
BsnI	GGCC	2 cut(s)	199, 322
Bsp119I	TTCGAA	1 cut(s)	555
Bsp143I	GATC	2 cut(s)	373, 592
BspACI	CCGC	2 cut(s)	316, 583
BspANI	GGCC	2 cut(s)	199, 322
BspCNI	CTCAG	1 cut(s)	6
BspDI	ATCGAT	1 cut(s)	296
BspLI	GGNNCC	2 cut(s)	55, 321
BspMAI	CTGCAG	1 cut(s)	526
BspT104I	TTCGAA	1 cut(s)	555
BspT107I	GGYRCC	1 cut(s)	53
BsrDI	GCAATG	1 cut(s)	315
BsrFI	RCCGGY	1 cut(s)	195
BssAI	RCCGGY	1 cut(s)	195
BssECI	CCNNGG	3 cut(s)	61, 150, 571
BssMI	GATC	2 cut(s)	373, 592
Bst2UI	CCWGG	1 cut(s)	572
Bst4CI	ACNGT	2 cut(s)	10, 245
BstAPI	GCANNNNNTGC	1 cut(s)	113
BstBI	TTCGAA	1 cut(s)	555
BstC8I	GCNNGC	1 cut(s)	369
BstDEI	CTNAG	2 cut(s)	14, 78
BstEII	GGTNACC	1 cut(s)	160
BstF5I	GGATG	4 cut(s)	57, 100, 342, 571
BstHHI	GCGC	1 cut(s)	348
BstKTI	GATC	2 cut(s)	376, 595
BstMBI	GATC	2 cut(s)	373, 592
BstMWI	GCNNNNNNNGC	2 cut(s)	39, 113
BstNI	CCWGG	1 cut(s)	572
BstPI	GGTNACC	1 cut(s)	160
BstSCI	CCNGG	3 cut(s)	49, 149, 570
BstSFI	CTRYAG	1 cut(s)	522
BstV1I	GCAGC	3 cut(s)	351, 536, 601
Bsu15I	ATCGAT	1 cut(s)	296
BsuRI	GGCC	2 cut(s)	199, 322
BsuTUI	ATCGAT	1 cut(s)	296
BtsCI	GGATG	4 cut(s)	57, 100, 342, 571
BtsIMutI	CAGTG	1 cut(s)	241
Cac8I	GCNNGC	1 cut(s)	369
CfoI	GCGC	1 cut(s)	348
Cfr10I	RCCGGY	1 cut(s)	195
Cfr13I	GGNCC	2 cut(s)	198, 320
ClaI	ATCGAT	1 cut(s)	296
Csp6I	GTAC	2 cut(s)	461, 516
CviAII	CATG	2 cut(s)	169, 202
CviJI	RGCY	9 cut(s)	66, 82, 179, 199, 322, 364, 439, 496, 527
CviKI_1	RGCY	9 cut(s)	66, 82, 179, 199, 322, 364, 439, 496, 527
CviQI	GTAC	2 cut(s)	461, 516
DdeI	CTNAG	2 cut(s)	14, 78
DpnI	GATC	2 cut(s)	375, 594
DpnII	GATC	2 cut(s)	373, 592
Eco32I	GATATC	1 cut(s)	424
Eco57I	CTGAAG	2 cut(s)	68, 419
Eco91I	GGTNACC	1 cut(s)	160
EcoO65I	GGTNACC	1 cut(s)	160
EcoRII	CCWGG	1 cut(s)	570
EcoRV	GATATC	1 cut(s)	424
FaeI	CATG	2 cut(s)	172, 205
FaiI	YATR	7 cut(s)	44, 131, 170, 203, 207, 455, 532
FalI	AAGNNNNNCTT	2 cut(s)	269, 301
FaqI	GGGAC	1 cut(s)	231
FatI	CATG	2 cut(s)	168, 201
FauI	CCCGC	1 cut(s)	309
Fnu4HI	GCNGC	3 cut(s)	365, 525, 615
FokI	GGATG	4 cut(s)	44, 107, 349, 578
Fsp4HI	GCNGC	3 cut(s)	365, 525, 615
FspBI	CTAG	1 cut(s)	144
GlaI	GCGC	1 cut(s)	347
GluI	GCNGC	3 cut(s)	365, 525, 615
HaeIII	GGCC	2 cut(s)	199, 322
HapII	CCGG	4 cut(s)	51, 138, 150, 196
HhaI	GCGC	1 cut(s)	348
Hin1II	CATG	2 cut(s)	172, 205
Hin6I	GCGC	1 cut(s)	346
HinP1I	GCGC	1 cut(s)	346
HindIII	AAGCTT	2 cut(s)	80, 494
HinfI	GANTC	1 cut(s)	74
HpaII	CCGG	4 cut(s)	51, 138, 150, 196
HphI	GGTGA	2 cut(s)	16, 154
Hpy188I	TCNGA	3 cut(s)	15, 273, 502
Hpy188III	TCNNGA	2 cut(s)	71, 86
HpyAV	CCTTC	1 cut(s)	443
HpyCH4III	ACNGT	2 cut(s)	10, 245
HpyCH4IV	ACGT	1 cut(s)	587
HpyCH4V	TGCA	6 cut(s)	107, 116, 308, 510, 524, 617
HpyF10VI	GCNNNNNNNGC	2 cut(s)	39, 113
HpyF3I	CTNAG	2 cut(s)	14, 78
HpySE526I	ACGT	1 cut(s)	587
Hsp92II	CATG	2 cut(s)	172, 205
HspAI	GCGC	1 cut(s)	346
Kzo9I	GATC	2 cut(s)	373, 592
LmnI	GCTCC	3 cut(s)	98, 184, 532
Lsp1109I	GCAGC	3 cut(s)	351, 536, 601
LweI	GCATC	1 cut(s)	519
MaeI	CTAG	1 cut(s)	144
MaeII	ACGT	1 cut(s)	587
MaeIII	GTNAC	2 cut(s)	4, 160
MalI	GATC	2 cut(s)	375, 594
MboI	GATC	2 cut(s)	373, 592
MboII	GAAGA	4 cut(s)	280, 286, 289, 496
MluCI	AATT	4 cut(s)	45, 111, 449, 475
MmeI	TCCRAC	1 cut(s)	251
MnlI	CCTC	5 cut(s)	20, 32, 71, 270, 529
MroXI	GAANNNNTTC	1 cut(s)	284
MseI	TTAA	2 cut(s)	395, 447
MslI	CAYNNNNRTG	1 cut(s)	167
MspI	CCGG	4 cut(s)	51, 138, 150, 196
MspR9I	CCNGG	3 cut(s)	51, 151, 572
MvaI	CCWGG	1 cut(s)	572
MwoI	GCNNNNNNNGC	2 cut(s)	39, 113
NciI	CCSGG	2 cut(s)	51, 151
NdeII	GATC	2 cut(s)	373, 592
NlaIII	CATG	2 cut(s)	172, 205
NlaIV	GGNNCC	2 cut(s)	55, 321
NmeAIII	GCCGAG	1 cut(s)	42
NmuCI	GTSAC	2 cut(s)	4, 160
NspV	TTCGAA	1 cut(s)	555
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PdmI	GAANNNNTTC	1 cut(s)	284
PfeI	GAWTC	1 cut(s)	74
PkrI	GCNGC	3 cut(s)	366, 526, 616
Psp6I	CCWGG	1 cut(s)	570
PspEI	GGTNACC	1 cut(s)	160
PspGI	CCWGG	1 cut(s)	570
PspN4I	GGNNCC	2 cut(s)	55, 321
PspPI	GGNCC	2 cut(s)	198, 320
PstI	CTGCAG	1 cut(s)	526
RsaI	GTAC	2 cut(s)	462, 517
RsaNI	GTAC	2 cut(s)	461, 516
RseI	CAYNNNNRTG	1 cut(s)	167
SaqAI	TTAA	2 cut(s)	395, 447
SatI	GCNGC	3 cut(s)	365, 525, 615
Sau3AI	GATC	2 cut(s)	373, 592
Sau96I	GGNCC	2 cut(s)	198, 320
ScrFI	CCNGG	3 cut(s)	51, 151, 572
SetI	ASST	8 cut(s)	31, 84, 181, 435, 498, 521, 529, 590
SfaNI	GCATC	1 cut(s)	519
SfcI	CTRYAG	1 cut(s)	522
SfuI	TTCGAA	1 cut(s)	555
SmiMI	CAYNNNNRTG	1 cut(s)	167
SmlI	CTYRAG	1 cut(s)	383
SmoI	CTYRAG	1 cut(s)	383
Sse9I	AATT	4 cut(s)	45, 111, 449, 475
SsiI	CCGC	2 cut(s)	316, 583
SspMI	CTAG	1 cut(s)	144
StyD4I	CCNGG	3 cut(s)	49, 149, 570
TaaI	ACNGT	2 cut(s)	10, 245
TaiI	ACGT	1 cut(s)	590
TaqI	TCGA	4 cut(s)	72, 296, 555, 600
TasI	AATT	4 cut(s)	45, 111, 449, 475
TatI	WGTACW	1 cut(s)	460
TfiI	GAWTC	1 cut(s)	74
Tru1I	TTAA	2 cut(s)	395, 447
Tru9I	TTAA	2 cut(s)	395, 447
TscAI	CASTG	1 cut(s)	248
TseFI	GTSAC	2 cut(s)	4, 160
TseI	GCWGC	3 cut(s)	364, 524, 614
Tsp45I	GTSAC	2 cut(s)	4, 160
TspDTI	ATGAA	3 cut(s)	222, 326, 468
TspRI	CASTG	1 cut(s)	248
XapI	RAATTY	2 cut(s)	449, 475
XmnI	GAANNNNTTC	1 cut(s)	284
XspI	CTAG	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.