Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001289

Physical Location & Seq

Genomic Coordinates Forward (+)

68495893 .. 68499773

Gene Structure 3881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG478900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGAAAGAACTGGTAGTATCGCTTTACAGCCCCCAACCTTTGGAAACCTAATCACTGTTCTGAGCATCGACGGCGGTGGAATAAGAGGGCTTATCCCAGGAACCATCCTTGCTTTGCTTGAGTCTGAACTTCAGAAGCTGGACGGTGAAGATGCAAGACTCGCCGACTATTTCGATGTGATTTCAGGGACAAACACAGGTGGTCTCGTAACTGCCATGCTCACAGCCCCAAATGAGAATGACCGTCCACTATTTGCTGCCAAAGATATCAAGGACTTCTACTTGACCCACTCCCCCAAAATCTTCCCCCAGAAGACTGGTTGGCTGTTTCCTCGTGCTAGAAAGATCATCAGAGCTCTAGCAGGACCGAAATACGATGGGAAGTATCTACATGGCTTGGTTAGGGAAAAGCTTGGTGACAAAAAACTGAACCAAACATTGACTAATATTGTTGTCATTCCTGCATTTGACATAAAGAATCTCCAACCAGCTATATTTTCCAGCTTCAAGACTTTGATTGCTATTGGTGAAGTGACAAAGGAATTAATTAAGGGGAGTTCAGACTTCTTTCCTATAAAACCAATGGACTATGGAAGATTTCTGGTGATATCCTTAGGAACTGGCTCATCTTATGCGGAACTGAAATACAATGCTCATGTTGCCTCCAAGTGGGGTGTGTTGAATTGGTTAACGAGCGGTGGTTCCACCCCATTAATCAATGCTTTCAGTCAAGCAAGTGCCGATATGGTCGATTTGCATCTTTCTGTGGTTTTCAAAGCCCTTCACCCGGAGAAAAACTATCTTCGAATTCAGGTATATGCTTCTATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Patatin

Protein Analysis

276

Amino Acids

30.21

Weight (kDa)

9.2

Isoelectric Point (pI)

22.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Patatin	PF01734	21 - 162	1.4e-11	Patatin-like phospholipase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001289)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15580 FvH4_1g15580 FvH4_1g15590 FvH4_1g15590 FvH4_1g15590 FvH4_1g15590 FvH4_2g34812
malus_domestica	MD02G1168000.v1.1 MD02G1168100.v1.1 MD08G1105000.v1.1 MD12G1245800.v1.1 MD15G1280200.v1.1
prunus_persica	Prupe.7G137000_v2.0.a1 Prupe.7G137000_v2.0.a1 Prupe.7G137100_v2.0.a1 Prupe.7G137200_v2.0.a1
pyrus_communis	pycom02g13500 pycom02g13510 pycom02g13520 pycom08g13580 pycom12g22530 pycom15g08060 pycom15g24290
rosa_chinensis	RchiOBHm_Chr2g0104901 RchiOBHm_Chr2g0104911 RchiOBHm_Chr2g0104931
rosa_laevigata	RLG00000010724 RLG00000017367 RLG00000017368 RLG00000017377
rosa_multiflora	Rmu_sc0002645.1_g000011 Rmu_sc0002645.1_g000013 Rmu_sc0002645.1_g000014 Rmu_sc0003419.1_g000003 Rmu_sc0010071.1_g000007 Rmu_sc0030819.1_g000001 Rmu_sc0034169.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138650 Rroxscaffold_2G00138680
rosa_rugosa	Rorug02G0123900 Rorug02G0123900
rosa_samantha	Rh2BG181700 Rh2BG181800 Rh2BG182300 Rh2DG180500 Rh2DG180600 Rh2DG181100 Rh5BG275000 Rh5BG275200 Rh6BG431000 Rh6BG478900
rosa_wichuraiana	Rw2G013700 Rw2G013710 Rw2G013720 Rw2G013730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	41
AccBSI	CCGCTC	1 cut(s)	696
AciI	CCGC	3 cut(s)	75, 635, 696
AcsI	RAATTY	1 cut(s)	807
AcuI	CTGAAG	1 cut(s)	116
AfiI	CCNNNNNNNGG	3 cut(s)	41, 669, 787
AgsI	TTSAA	3 cut(s)	508, 682, 775
AjnI	CCWGG	1 cut(s)	97
AluBI	AGCT	5 cut(s)	139, 356, 412, 491, 504
AluI	AGCT	5 cut(s)	139, 356, 412, 491, 504
Alw21I	GWGCWC	1 cut(s)	358
Alw26I	GTCTC	1 cut(s)	209
AlwNI	CAGNNNCTG	1 cut(s)	139
ApeKI	GCWGC	1 cut(s)	257
ApoI	RAATTY	1 cut(s)	807
AseI	ATTAAT	2 cut(s)	545, 713
AspS9I	GGNCC	1 cut(s)	365
AsuC2I	CCSGG	1 cut(s)	788
AsuHPI	GGTGA	5 cut(s)	158, 428, 539, 616, 776
AsuII	TTCGAA	1 cut(s)	805
AvaII	GGWCC	1 cut(s)	365
AxyI	CCTNAGG	1 cut(s)	613
BanII	GRGCYC	1 cut(s)	358
BauI	CACGAG	1 cut(s)	333
BbsI	GAAGAC	1 cut(s)	320
Bbv12I	GWGCWC	1 cut(s)	358
BbvI	GCAGC	1 cut(s)	244
BccI	CCATC	2 cut(s)	113, 371
BceAI	ACGGC	1 cut(s)	88
BciT130I	CCWGG	1 cut(s)	99
BcnI	CCSGG	1 cut(s)	788
BcoDI	GTCTC	1 cut(s)	209
BfaI	CTAG	2 cut(s)	339, 359
BisI	GCNGC	1 cut(s)	258
BlsI	GCNGC	1 cut(s)	259
Bme1390I	CCNGG	2 cut(s)	99, 788
Bme18I	GGWCC	1 cut(s)	365
BmgT120I	GGNCC	1 cut(s)	365
BmiI	GGNNCC	2 cut(s)	103, 703
BmrFI	CCNGG	2 cut(s)	99, 788
BmsI	GCATC	3 cut(s)	75, 142, 766
BpiI	GAAGAC	1 cut(s)	320
Bpu14I	TTCGAA	1 cut(s)	805
BpuEI	CTTGAG	1 cut(s)	140
BpuMI	CCSGG	1 cut(s)	788
BsaBI	GATNNNNATC	1 cut(s)	756
BsaI	GGTCTC	1 cut(s)	209
BsaJI	CCNNGG	1 cut(s)	97
Bsc4I	CCNNNNNNNGG	3 cut(s)	41, 669, 787
Bse1I	ACTGG	3 cut(s)	16, 322, 625
Bse21I	CCTNAGG	1 cut(s)	613
Bse8I	GATNNNNATC	1 cut(s)	756
BseBI	CCWGG	1 cut(s)	99
BseDI	CCNNGG	1 cut(s)	97
BseGI	GGATG	1 cut(s)	105
BseJI	GATNNNNATC	1 cut(s)	756
BseLI	CCNNNNNNNGG	3 cut(s)	41, 669, 787
BseMII	CTCAG	1 cut(s)	53
BseNI	ACTGG	3 cut(s)	16, 322, 625
BseXI	GCAGC	1 cut(s)	244
BsiHKAI	GWGCWC	1 cut(s)	358
BsiSI	CCGG	1 cut(s)	788
BslFI	GGGAC	1 cut(s)	202
BslI	CCNNNNNNNGG	3 cut(s)	41, 669, 787
BsmAI	GTCTC	1 cut(s)	209
BsmFI	GGGAC	1 cut(s)	202
Bso31I	GGTCTC	1 cut(s)	209
Bsp119I	TTCGAA	1 cut(s)	805
Bsp1286I	GDGCHC	1 cut(s)	358
Bsp143I	GATC	1 cut(s)	345
BspACI	CCGC	3 cut(s)	75, 635, 696
BspCNI	CTCAG	1 cut(s)	54
BspLI	GGNNCC	2 cut(s)	103, 703
BspT104I	TTCGAA	1 cut(s)	805
BspTNI	GGTCTC	1 cut(s)	209
BsrBI	CCGCTC	1 cut(s)	696
BsrI	ACTGG	3 cut(s)	16, 322, 625
BssECI	CCNNGG	1 cut(s)	97
BssMI	GATC	1 cut(s)	345
BssSI	CACGAG	1 cut(s)	333
Bst2BI	CACGAG	1 cut(s)	333
Bst2UI	CCWGG	1 cut(s)	99
Bst4CI	ACNGT	3 cut(s)	58, 146, 245
BstBI	TTCGAA	1 cut(s)	805
BstDEI	CTNAG	2 cut(s)	62, 613
BstF5I	GGATG	1 cut(s)	105
BstKTI	GATC	1 cut(s)	348
BstMAI	GTCTC	1 cut(s)	209
BstMBI	GATC	1 cut(s)	345
BstMWI	GCNNNNNNNGC	3 cut(s)	72, 161, 659
BstNI	CCWGG	1 cut(s)	99
BstSCI	CCNGG	2 cut(s)	97, 786
BstV1I	GCAGC	1 cut(s)	244
BstV2I	GAAGAC	1 cut(s)	320
BstXI	CCANNNNNNTGG	1 cut(s)	317
Bsu36I	CCTNAGG	1 cut(s)	613
BtsCI	GGATG	1 cut(s)	105
BtsIMutI	CAGTG	1 cut(s)	54
CaiI	CAGNNNCTG	1 cut(s)	139
Cfr13I	GGNCC	1 cut(s)	365
CviAII	CATG	3 cut(s)	217, 392, 656
DdeI	CTNAG	2 cut(s)	62, 613
DpnI	GATC	1 cut(s)	347
DpnII	GATC	1 cut(s)	345
Ecl136II	GAGCTC	1 cut(s)	356
Eco24I	GRGCYC	1 cut(s)	358
Eco31I	GGTCTC	1 cut(s)	209
Eco32I	GATATC	2 cut(s)	268, 609
Eco47I	GGWCC	1 cut(s)	365
Eco53kI	GAGCTC	1 cut(s)	356
Eco57I	CTGAAG	1 cut(s)	116
Eco81I	CCTNAGG	1 cut(s)	613
EcoICRI	GAGCTC	1 cut(s)	356
EcoRI	GAATTC	1 cut(s)	807
EcoRII	CCWGG	1 cut(s)	97
EcoRV	GATATC	2 cut(s)	268, 609
EcoT38I	GRGCYC	1 cut(s)	358
FaeI	CATG	3 cut(s)	220, 395, 659
FaqI	GGGAC	1 cut(s)	202
FatI	CATG	3 cut(s)	216, 391, 655
Fnu4HI	GCNGC	1 cut(s)	258
FokI	GGATG	1 cut(s)	92
FriOI	GRGCYC	1 cut(s)	358
Fsp4HI	GCNGC	1 cut(s)	258
FspBI	CTAG	2 cut(s)	339, 359
GluI	GCNGC	1 cut(s)	258
HapII	CCGG	1 cut(s)	788
Hin1II	CATG	3 cut(s)	220, 395, 659
HincII	GTYRAC	1 cut(s)	690
HindII	GTYRAC	1 cut(s)	690
HindIII	AAGCTT	1 cut(s)	410
HinfI	GANTC	3 cut(s)	122, 159, 478
HpaI	GTTAAC	1 cut(s)	690
HpaII	CCGG	1 cut(s)	788
HphI	GGTGA	5 cut(s)	158, 428, 539, 616, 776
Hpy166II	GTNNAC	2 cut(s)	248, 690
Hpy188I	TCNGA	5 cut(s)	63, 127, 135, 353, 562
Hpy188III	TCNNGA	1 cut(s)	508
Hpy8I	GTNNAC	2 cut(s)	248, 690
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	1 cut(s)	791
HpyCH4III	ACNGT	3 cut(s)	58, 146, 245
HpyCH4V	TGCA	3 cut(s)	155, 464, 757
HpyF10VI	GCNNNNNNNGC	3 cut(s)	72, 161, 659
HpyF3I	CTNAG	2 cut(s)	62, 613
Hsp92II	CATG	3 cut(s)	220, 395, 659
KspAI	GTTAAC	1 cut(s)	690
Kzo9I	GATC	1 cut(s)	345
Lsp1109I	GCAGC	1 cut(s)	244
LweI	GCATC	3 cut(s)	75, 142, 766
MaeI	CTAG	2 cut(s)	339, 359
MaeIII	GTNAC	3 cut(s)	208, 416, 532
MalI	GATC	1 cut(s)	347
MbiI	CCGCTC	1 cut(s)	696
MboI	GATC	1 cut(s)	345
MboII	GAAGA	5 cut(s)	161, 295, 325, 606, 794
MhlI	GDGCHC	1 cut(s)	358
MluCI	AATT	4 cut(s)	542, 546, 682, 807
MlyI	GAGTC	2 cut(s)	131, 153
MmeI	TCCRAC	1 cut(s)	508
MnlI	CCTC	3 cut(s)	80, 342, 673
MseI	TTAA	4 cut(s)	545, 549, 689, 713
MspI	CCGG	1 cut(s)	788
MspR9I	CCNGG	2 cut(s)	99, 788
MvaI	CCWGG	1 cut(s)	99
MwoI	GCNNNNNNNGC	3 cut(s)	72, 161, 659
NciI	CCSGG	1 cut(s)	788
NdeII	GATC	1 cut(s)	345
NlaIII	CATG	3 cut(s)	220, 395, 659
NlaIV	GGNNCC	2 cut(s)	103, 703
NmuCI	GTSAC	2 cut(s)	416, 532
NspV	TTCGAA	1 cut(s)	805
PacI	TTAATTAA	1 cut(s)	549
PfeI	GAWTC	1 cut(s)	478
PflMI	CCANNNNNTGG	1 cut(s)	41
PkrI	GCNGC	1 cut(s)	259
PleI	GAGTC	2 cut(s)	130, 153
PpsI	GAGTC	2 cut(s)	130, 153
PshBI	ATTAAT	2 cut(s)	545, 713
Psp124BI	GAGCTC	1 cut(s)	358
Psp6I	CCWGG	1 cut(s)	97
PspGI	CCWGG	1 cut(s)	97
PspN4I	GGNNCC	2 cut(s)	103, 703
PspPI	GGNCC	1 cut(s)	365
PstNI	CAGNNNCTG	1 cut(s)	139
SacI	GAGCTC	1 cut(s)	358
SaqAI	TTAA	4 cut(s)	545, 549, 689, 713
SatI	GCNGC	1 cut(s)	258
Sau3AI	GATC	1 cut(s)	345
Sau96I	GGNCC	1 cut(s)	365
SchI	GAGTC	2 cut(s)	131, 153
ScrFI	CCNGG	2 cut(s)	99, 788
SduI	GDGCHC	1 cut(s)	358
SetI	ASST	9 cut(s)	41, 51, 141, 202, 358, 414, 493, 506, 816
SfaNI	GCATC	3 cut(s)	75, 142, 766
SfuI	TTCGAA	1 cut(s)	805
SinI	GGWCC	1 cut(s)	365
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	4 cut(s)	542, 546, 682, 807
SsiI	CCGC	3 cut(s)	75, 635, 696
SspI	AATATT	1 cut(s)	448
SspMI	CTAG	2 cut(s)	339, 359
SstI	GAGCTC	1 cut(s)	358
StyD4I	CCNGG	2 cut(s)	97, 786
TaaI	ACNGT	3 cut(s)	58, 146, 245
TaqI	TCGA	4 cut(s)	69, 174, 750, 805
TaqII	GACCGA	1 cut(s)	382
TasI	AATT	4 cut(s)	542, 546, 682, 807
TfiI	GAWTC	1 cut(s)	478
Tru1I	TTAA	4 cut(s)	545, 549, 689, 713
Tru9I	TTAA	4 cut(s)	545, 549, 689, 713
TscAI	CASTG	1 cut(s)	61
TseFI	GTSAC	2 cut(s)	416, 532
TseI	GCWGC	1 cut(s)	257
Tsp45I	GTSAC	2 cut(s)	416, 532
TspRI	CASTG	1 cut(s)	61
Van91I	CCANNNNNTGG	1 cut(s)	41
VpaK11BI	GGWCC	1 cut(s)	365
VspI	ATTAAT	2 cut(s)	545, 713
XapI	RAATTY	1 cut(s)	807
XspI	CTAG	2 cut(s)	339, 359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.