Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034169.1

Orthogroup ID

OG0001289

Physical Location & Seq

Genomic Coordinates Reverse (-)

740 .. 8501

Gene Structure 7762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034169.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

atgaaaccagggccaaaatatgatgggaggtatctgcgctcattgacaaacgggcttcttggtgacctcactctcaagcagactttaaccaatgtggtcattccaacttttgatatcaaacaccttcagcctgtggttttcacaaccatcgacgcaaaagaaaattcattgaagaatgcaaagctttcagatgtctgcatcagtacctctgcagctccatcttatctccccccacactactttgaagtcaaggatgaccagggaaatatccgcacgtttgatcttgtcgatggtggggttgctgcaaacaaccctacaatgatggccataagccacataaacagagagatgttgaagaacaactcagaaccgatggatgcgactcggttgcaagtgctgtcattgggcaccggtgctgccaagtatgcagagaagtacagtgcagtcgacgcatcaaaatggggtttggtgaattggatgtttgataatgggagcacacctttgctggacatttttggcgatgcaagttctgatatggttgactttcatgtctccactctcttccagtccctcaatgtcaaggacaattacctaagaattcaggatgacacattgagcggtgaagaatcatcagtggatattgcaaccgagaagaatctggaaagccttgtggtgatcggaaacgggttgctaaagaagccagtgtcaagggtgaatatggatacagggagccactttgggagaagcatctatgtcctccgagctccgaaagccctcaagaatcaccggcaaaggtggccagaatcgccaactccgatcaaggcgatttcatccccgaagtggcctcttccggtcgatgtagctccctccacagctcgaatctctcttcaatccttccacagacctctagaagggattgaggcaacgagaaccaactttgaatcgcatccaaaggtggccggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0044424 GO:0044464 GO:0047372 GO:0052689

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Patatin

Protein Analysis

321

Amino Acids

35.35

Weight (kDa)

7.1

Isoelectric Point (pI)

39.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001289)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15580 FvH4_1g15580 FvH4_1g15590 FvH4_1g15590 FvH4_1g15590 FvH4_1g15590 FvH4_2g34812
malus_domestica	MD02G1168000.v1.1 MD02G1168100.v1.1 MD08G1105000.v1.1 MD12G1245800.v1.1 MD15G1280200.v1.1
prunus_persica	Prupe.7G137000_v2.0.a1 Prupe.7G137000_v2.0.a1 Prupe.7G137100_v2.0.a1 Prupe.7G137200_v2.0.a1
pyrus_communis	pycom02g13500 pycom02g13510 pycom02g13520 pycom08g13580 pycom12g22530 pycom15g08060 pycom15g24290
rosa_chinensis	RchiOBHm_Chr2g0104901 RchiOBHm_Chr2g0104911 RchiOBHm_Chr2g0104931
rosa_laevigata	RLG00000010724 RLG00000017367 RLG00000017368 RLG00000017377
rosa_multiflora	Rmu_sc0002645.1_g000011 Rmu_sc0002645.1_g000013 Rmu_sc0002645.1_g000014 Rmu_sc0003419.1_g000003 Rmu_sc0010071.1_g000007 Rmu_sc0030819.1_g000001 Rmu_sc0034169.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138650 Rroxscaffold_2G00138680
rosa_rugosa	Rorug02G0123900 Rorug02G0123900
rosa_samantha	Rh2BG181700 Rh2BG181800 Rh2BG182300 Rh2DG180500 Rh2DG180600 Rh2DG181100 Rh5BG275000 Rh5BG275200 Rh6BG431000 Rh6BG478900
rosa_wichuraiana	Rw2G013700 Rw2G013710 Rw2G013720 Rw2G013730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	548
AccB1I	GGYRCC	1 cut(s)	407
AccBSI	CCGCTC	1 cut(s)	618
AccI	GTMKAC	1 cut(s)	447
AciI	CCGC	2 cut(s)	271, 618
AcoI	YGGCCR	3 cut(s)	324, 797, 957
AcsI	RAATTY	2 cut(s)	163, 597
AcuI	CTGAAG	1 cut(s)	110
AfaI	GTAC	2 cut(s)	205, 437
AfiI	CCNNNNNNNGG	2 cut(s)	840, 911
AgeI	ACCGGT	1 cut(s)	410
AgsI	TTSAA	5 cut(s)	172, 245, 355, 890, 941
AjnI	CCWGG	2 cut(s)	7, 258
AluBI	AGCT	5 cut(s)	184, 215, 764, 863, 875
AluI	AGCT	5 cut(s)	184, 215, 764, 863, 875
Alw21I	GWGCWC	2 cut(s)	497, 766
Alw26I	GTCTC	1 cut(s)	556
AoxI	GGCC	5 cut(s)	11, 324, 797, 842, 957
ApeKI	GCWGC	3 cut(s)	212, 302, 416
ApoI	RAATTY	2 cut(s)	163, 597
AsiGI	ACCGGT	1 cut(s)	410
AspLEI	GCGC	1 cut(s)	39
AspS9I	GGNCC	1 cut(s)	11
AsuHPI	GGTGA	6 cut(s)	74, 481, 632, 685, 724, 776
BaeGI	GKGCMC	1 cut(s)	410
BalI	TGGCCA	2 cut(s)	326, 799
BanI	GGYRCC	1 cut(s)	407
BanII	GRGCYC	1 cut(s)	766
Bbv12I	GWGCWC	2 cut(s)	497, 766
BbvI	GCAGC	3 cut(s)	224, 289, 403
BccI	CCATC	6 cut(s)	17, 155, 226, 284, 316, 367
BcgI	CGANNNNNNTGC	2 cut(s)	370, 404
BciT130I	CCWGG	2 cut(s)	9, 260
BciVI	GTATCC	1 cut(s)	715
BcoDI	GTCTC	1 cut(s)	556
BfaI	CTAG	1 cut(s)	908
BfmI	CTRYAG	1 cut(s)	210
BfuI	GTATCC	1 cut(s)	715
BisI	GCNGC	3 cut(s)	213, 303, 417
BlsI	GCNGC	3 cut(s)	214, 304, 418
Bme1390I	CCNGG	2 cut(s)	9, 260
BmgT120I	GGNCC	1 cut(s)	11
BmiI	GGNNCC	2 cut(s)	409, 731
BmrFI	CCNGG	2 cut(s)	9, 260
BmsI	GCATC	6 cut(s)	207, 367, 461, 511, 756, 955
BpuEI	CTTGAG	2 cut(s)	59, 761
BsaJI	CCNNGG	2 cut(s)	8, 259
BsaWI	WCCGGW	2 cut(s)	410, 850
Bsc4I	CCNNNNNNNGG	2 cut(s)	840, 911
Bse118I	RCCGGY	2 cut(s)	410, 786
Bse1I	ACTGG	2 cut(s)	565, 701
BseBI	CCWGG	2 cut(s)	9, 260
BseDI	CCNNGG	2 cut(s)	8, 259
BseGI	GGATG	6 cut(s)	259, 382, 483, 610, 830, 946
BseLI	CCNNNNNNNGG	2 cut(s)	840, 911
BseMII	CTCAG	1 cut(s)	378
BseNI	ACTGG	2 cut(s)	565, 701
BseSI	GKGCMC	1 cut(s)	410
BseXI	GCAGC	3 cut(s)	224, 289, 403
BsgI	GTGCAG	1 cut(s)	462
Bsh1285I	CGRYCG	1 cut(s)	855
BshFI	GGCC	5 cut(s)	13, 326, 799, 844, 959
BshNI	GGYRCC	1 cut(s)	407
BshTI	ACCGGT	1 cut(s)	410
BsiEI	CGRYCG	1 cut(s)	855
BsiHKAI	GWGCWC	2 cut(s)	497, 766
BsiSI	CCGG	4 cut(s)	411, 787, 851, 960
BslFI	GGGAC	1 cut(s)	553
BslI	CCNNNNNNNGG	2 cut(s)	840, 911
BsmAI	GTCTC	1 cut(s)	556
BsmFI	GGGAC	1 cut(s)	553
BsmI	GAATGC	1 cut(s)	181
BsnI	GGCC	5 cut(s)	13, 326, 799, 844, 959
Bsp1286I	GDGCHC	3 cut(s)	410, 497, 766
Bsp143I	GATC	3 cut(s)	280, 675, 816
BspACI	CCGC	2 cut(s)	271, 618
BspANI	GGCC	5 cut(s)	13, 326, 799, 844, 959
BspCNI	CTCAG	1 cut(s)	377
BspLI	GGNNCC	2 cut(s)	409, 731
BspMAI	CTGCAG	1 cut(s)	214
BspT107I	GGYRCC	1 cut(s)	407
BsrBI	CCGCTC	1 cut(s)	618
BsrFI	RCCGGY	2 cut(s)	410, 786
BsrI	ACTGG	2 cut(s)	565, 701
BssAI	RCCGGY	2 cut(s)	410, 786
BssECI	CCNNGG	2 cut(s)	8, 259
BssMI	GATC	3 cut(s)	280, 675, 816
Bst2UI	CCWGG	2 cut(s)	9, 260
Bst4CI	ACNGT	1 cut(s)	440
Bst6I	CTCTTC	3 cut(s)	566, 852, 891
BstDEI	CTNAG	2 cut(s)	364, 593
BstEII	GGTNACC	1 cut(s)	62
BstENI	CCTNNNNNAGG	1 cut(s)	909
BstF5I	GGATG	6 cut(s)	259, 382, 483, 610, 830, 946
BstHHI	GCGC	1 cut(s)	39
BstKTI	GATC	3 cut(s)	283, 678, 819
BstMAI	GTCTC	1 cut(s)	556
BstMBI	GATC	3 cut(s)	280, 675, 816
BstMCI	CGRYCG	1 cut(s)	855
BstMWI	GCNNNNNNNGC	6 cut(s)	425, 449, 697, 770, 796, 805
BstNI	CCWGG	2 cut(s)	9, 260
BstPI	GGTNACC	1 cut(s)	62
BstSCI	CCNGG	2 cut(s)	7, 258
BstSFI	CTRYAG	1 cut(s)	210
BstSLI	GKGCMC	1 cut(s)	410
BstV1I	GCAGC	3 cut(s)	224, 289, 403
BsuI	GTATCC	1 cut(s)	715
BsuRI	GGCC	5 cut(s)	13, 326, 799, 844, 959
BtgZI	GCGATG	1 cut(s)	534
BtsCI	GGATG	6 cut(s)	259, 382, 483, 610, 830, 946
BtsIMutI	CAGTG	3 cut(s)	445, 639, 708
CfoI	GCGC	1 cut(s)	39
Cfr10I	RCCGGY	2 cut(s)	410, 786
Cfr13I	GGNCC	1 cut(s)	11
CseI	GACGC	2 cut(s)	161, 458
Csp6I	GTAC	2 cut(s)	204, 436
CspAI	ACCGGT	1 cut(s)	410
CviAII	CATG	1 cut(s)	548
CviQI	GTAC	2 cut(s)	204, 436
DdeI	CTNAG	2 cut(s)	364, 593
DpnI	GATC	3 cut(s)	282, 677, 818
DpnII	GATC	3 cut(s)	280, 675, 816
DrdI	GACNNNNNNGTC	1 cut(s)	548
DseDI	GACNNNNNNGTC	1 cut(s)	548
EaeI	YGGCCR	3 cut(s)	324, 797, 957
Eam1104I	CTCTTC	3 cut(s)	566, 852, 891
EarI	CTCTTC	3 cut(s)	566, 852, 891
Ecl136II	GAGCTC	1 cut(s)	764
Eco24I	GRGCYC	1 cut(s)	766
Eco32I	GATATC	1 cut(s)	115
Eco53kI	GAGCTC	1 cut(s)	764
Eco57I	CTGAAG	1 cut(s)	110
Eco91I	GGTNACC	1 cut(s)	62
EcoICRI	GAGCTC	1 cut(s)	764
EcoNI	CCTNNNNNAGG	1 cut(s)	909
EcoO65I	GGTNACC	1 cut(s)	62
EcoRI	GAATTC	1 cut(s)	597
EcoRII	CCWGG	2 cut(s)	7, 258
EcoRV	GATATC	1 cut(s)	115
EcoT38I	GRGCYC	1 cut(s)	766
FaeI	CATG	1 cut(s)	551
FaiI	YATR	8 cut(s)	21, 329, 338, 426, 536, 549, 719, 753
FaqI	GGGAC	1 cut(s)	553
FatI	CATG	1 cut(s)	547
FblI	GTMKAC	1 cut(s)	447
Fnu4HI	GCNGC	3 cut(s)	213, 303, 417
FokI	GGATG	6 cut(s)	266, 389, 490, 617, 817, 933
FriOI	GRGCYC	1 cut(s)	766
Fsp4HI	GCNGC	3 cut(s)	213, 303, 417
FspBI	CTAG	1 cut(s)	908
GlaI	GCGC	1 cut(s)	38
GluI	GCNGC	3 cut(s)	213, 303, 417
HaeIII	GGCC	5 cut(s)	13, 326, 799, 844, 959
HapII	CCGG	4 cut(s)	411, 787, 851, 960
HgaI	GACGC	2 cut(s)	161, 458
HhaI	GCGC	1 cut(s)	39
Hin1II	CATG	1 cut(s)	551
Hin6I	GCGC	1 cut(s)	37
HinP1I	GCGC	1 cut(s)	37
HincII	GTYRAC	2 cut(s)	448, 541
HindII	GTYRAC	2 cut(s)	448, 541
HindIII	AAGCTT	1 cut(s)	182
HinfI	GANTC	7 cut(s)	382, 626, 655, 781, 803, 879, 941
HpaII	CCGG	4 cut(s)	411, 787, 851, 960
HphI	GGTGA	6 cut(s)	74, 481, 632, 685, 724, 776
Hpy166II	GTNNAC	2 cut(s)	448, 541
Hpy188I	TCNGA	7 cut(s)	190, 367, 532, 680, 761, 768, 816
Hpy188III	TCNNGA	4 cut(s)	602, 659, 778, 908
Hpy8I	GTNNAC	2 cut(s)	448, 541
Hpy99I	CGWCG	2 cut(s)	155, 452
HpyAV	CCTTC	3 cut(s)	134, 904, 905
HpyCH4III	ACNGT	1 cut(s)	440
HpyCH4IV	ACGT	1 cut(s)	275
HpyCH4V	TGCA	9 cut(s)	179, 198, 212, 305, 391, 428, 443, 524, 644
HpyF10VI	GCNNNNNNNGC	6 cut(s)	425, 449, 697, 770, 796, 805
HpyF3I	CTNAG	2 cut(s)	364, 593
HpySE526I	ACGT	1 cut(s)	275
Hsp92II	CATG	1 cut(s)	551
HspAI	GCGC	1 cut(s)	37
Kzo9I	GATC	3 cut(s)	280, 675, 816
LmnI	GCTCC	5 cut(s)	220, 492, 729, 769, 868
Lsp1109I	GCAGC	3 cut(s)	224, 289, 403
LweI	GCATC	6 cut(s)	207, 367, 461, 511, 756, 955
MaeI	CTAG	1 cut(s)	908
MaeII	ACGT	1 cut(s)	275
MaeIII	GTNAC	1 cut(s)	62
MalI	GATC	3 cut(s)	282, 677, 818
MbiI	CCGCTC	1 cut(s)	618
MboI	GATC	3 cut(s)	280, 675, 816
MboII	GAAGA	7 cut(s)	184, 367, 553, 635, 664, 839, 878
MhlI	GDGCHC	3 cut(s)	410, 497, 766
MlsI	TGGCCA	2 cut(s)	326, 799
MluCI	AATT	4 cut(s)	163, 472, 586, 597
MluNI	TGGCCA	2 cut(s)	326, 799
MlyI	GAGTC	1 cut(s)	376
MmeI	TCCRAC	1 cut(s)	128
Mox20I	TGGCCA	2 cut(s)	326, 799
MscI	TGGCCA	2 cut(s)	326, 799
MseI	TTAA	1 cut(s)	86
MslI	CAYNNNNRTG	1 cut(s)	457
Msp20I	TGGCCA	2 cut(s)	326, 799
MspI	CCGG	4 cut(s)	411, 787, 851, 960
MspR9I	CCNGG	2 cut(s)	9, 260
Mva1269I	GAATGC	1 cut(s)	181
MvaI	CCWGG	2 cut(s)	9, 260
MwoI	GCNNNNNNNGC	6 cut(s)	425, 449, 697, 770, 796, 805
NdeII	GATC	3 cut(s)	280, 675, 816
NlaIII	CATG	1 cut(s)	551
NlaIV	GGNNCC	2 cut(s)	409, 731
NmuCI	GTSAC	1 cut(s)	62
PcsI	WCGNNNNNNNCGW	1 cut(s)	812
PctI	GAATGC	1 cut(s)	181
PfeI	GAWTC	6 cut(s)	626, 655, 781, 803, 879, 941
PinAI	ACCGGT	1 cut(s)	410
PkrI	GCNGC	3 cut(s)	214, 304, 418
PleI	GAGTC	1 cut(s)	376
PpsI	GAGTC	1 cut(s)	376
Psp124BI	GAGCTC	1 cut(s)	766
Psp6I	CCWGG	2 cut(s)	7, 258
PspEI	GGTNACC	1 cut(s)	62
PspGI	CCWGG	2 cut(s)	7, 258
PspN4I	GGNNCC	2 cut(s)	409, 731
PspPI	GGNCC	1 cut(s)	11
PstI	CTGCAG	1 cut(s)	214
RsaI	GTAC	2 cut(s)	205, 437
RsaNI	GTAC	2 cut(s)	204, 436
RseI	CAYNNNNRTG	1 cut(s)	457
SacI	GAGCTC	1 cut(s)	766
SalI	GTCGAC	1 cut(s)	446
SaqAI	TTAA	1 cut(s)	86
SatI	GCNGC	3 cut(s)	213, 303, 417
Sau3AI	GATC	3 cut(s)	280, 675, 816
Sau96I	GGNCC	1 cut(s)	11
SchI	GAGTC	1 cut(s)	376
ScrFI	CCNGG	2 cut(s)	9, 260
SduI	GDGCHC	3 cut(s)	410, 497, 766
SfaNI	GCATC	6 cut(s)	207, 367, 461, 511, 756, 955
SfcI	CTRYAG	1 cut(s)	210
SgrAI	CRCCGGYG	1 cut(s)	410
SmiMI	CAYNNNNRTG	1 cut(s)	457
SmlI	CTYRAG	2 cut(s)	74, 776
SmoI	CTYRAG	2 cut(s)	74, 776
Sse9I	AATT	4 cut(s)	163, 472, 586, 597
SsiI	CCGC	2 cut(s)	271, 618
SspMI	CTAG	1 cut(s)	908
SstI	GAGCTC	1 cut(s)	766
StyD4I	CCNGG	2 cut(s)	7, 258
TaaI	ACNGT	1 cut(s)	440
TaiI	ACGT	1 cut(s)	278
TaqI	TCGA	5 cut(s)	150, 288, 447, 855, 877
TasI	AATT	4 cut(s)	163, 472, 586, 597
TatI	WGTACW	1 cut(s)	435
TfiI	GAWTC	6 cut(s)	626, 655, 781, 803, 879, 941
Tru1I	TTAA	1 cut(s)	86
Tru9I	TTAA	1 cut(s)	86
TscAI	CASTG	3 cut(s)	445, 639, 708
TseFI	GTSAC	1 cut(s)	62
TseI	GCWGC	3 cut(s)	212, 302, 416
Tsp45I	GTSAC	1 cut(s)	62
TspDTI	ATGAA	4 cut(s)	17, 156, 536, 819
TspRI	CASTG	3 cut(s)	445, 639, 708
XagI	CCTNNNNNAGG	1 cut(s)	909
XapI	RAATTY	2 cut(s)	163, 597
XbaI	TCTAGA	1 cut(s)	907
XmiI	GTMKAC	1 cut(s)	447
XspI	CTAG	1 cut(s)	908

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.