Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0000727

Physical Location & Seq

Genomic Coordinates Forward (+)

8527879 .. 8530453

Gene Structure 2575 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGAGAAGGTGTTCAAGATCGATCAACATTACGTATACGAAGAAGGAGAGGTTCCAATATTTCACGAAGGGCCATGCAGGGGTATATATTCATCAGAAGGAAGGTTTATTCATGAGATGGAGAAGGGCAAATTTTATCGTACAAAAGACCCTCACAAGGCACTTGTTTATTTCCTTCCATTCAGTGTGGTTACTATGGTTCAGTATATCTATATGCCTGAAACATTTGATCGAAATGGCATGAAGCTTGCTGTGGTCGACTACATCAATCTCATTTCTCACAAACATCCCTTCTGGAACCGAAGCCACGGTGCTGATCATTTCATGTTGTCCTGTCACGATTGGGGACCATTTACGACATCCTTCGTCCCTGATTTATTCCACAACTCCATTAGAGTTATGTGCAATGCAAACACTTCAGAAGGATTTAATTCGTCAAAAGATGCGTCACTTCCAGAGATTAATCTGAAAACATCGGAAATGTCAGGAATCGGCGGCCAGCCTCCATCGAATCGATCCACACTAGCTTTCTATGCTGGGGGTCTACACGGCCACATCAGGTACCTTCTCCTAAACAAATGGAAAGACAAAGACCAAGACGTGTTAGTTTACGACAAACTTCCTCAGGGAATGTCGTACGAGAACATGTTCAAGAGCAGCAAGTTTTGCTTATGCCCTAGCGGGTACGAAGTAGCGAGTCCAAGAGTGGTGGAAGCAATTTACGCCGAGTGTGTGCCGGTGTTGATTTCAGATGGCTACGTTCCTCCATTCAGCGATGTTTTGAACTGGAACTCGTTTTCTGTACAAGTTCCGGTCAAGAATATATCCGACATCAAGACCATATTGACAGCCATATCGAGCAGACGGTACCTCCGGATGCATAGGAGGGTGAAACAAGTGCAACGGCATTTTTTGGTGAATGGACCGCCGAAGAGATACGATGTTTTCCACATGATTGTTCACTCCGTCTGGCTCAGACGCTTAAACATTCGCATTCAAGATATATTCACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin

Protein Analysis

338

Amino Acids

39.03

Weight (kDa)

8.86

Isoelectric Point (pI)

56.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exostosin_GT47	PF03016	11 - 284	1.1e-57	Exostosin GT47 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000727)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03795
fragaria_vesca	FvH4_1g25430 FvH4_2g00470 FvH4_2g02351 FvH4_2g02352 FvH4_2g02430 FvH4_6g17390 FvH4_6g17390 FvH4_6g17390
malus_domestica	MD05G1001700.v1.1 MD10G1002900.v1.1 MD12G1101000.v1.1 MD14G1095400.v1.1 MD15G1138300.v1.1 MD15G1138400.v1.1
prunus_persica	Prupe.4G281300_v2.0.a1 Prupe.7G121600_v2.0.a1 Prupe.8G004600_v2.0.a1
pyrus_communis	pycom05g00190 pycom10g00230 pycom12g09940 pycom14g09360 pycom15g12460 pycom15g12470 pycom15g12480 pycom15g12490 pycom15g12510 pycom15g12520
rosa_chinensis	RchiOBHm_Chr2g0123451 RchiOBHm_Chr3g0471641 RchiOBHm_Chr6g0246291 RchiOBHm_Chr6g0250461
rosa_laevigata	RLG00000015265 RLG00000015539 RLG00000018756 RLG00000024149 RLG00000026019
rosa_multiflora	Rmu_sc0000411.1_g000001 Rmu_sc0001066.1_g000013 Rmu_sc0005631.1_g000006
rosa_roxburghii	Rroxscaffold_2G00120630 Rroxscaffold_2G00120640 Rroxscaffold_6G00409720 Rroxscaffold_7G00214700 Rroxscaffold_7G00217220
rosa_rugosa	Rorug02G0245900 Rorug03G0118500 Rorug03G0118600 Rorug05G0496700 Rorug05G0520100
rosa_samantha	Rh2AG304500 Rh2BG312600 Rh2CG291000 Rh2DG328500 Rh3AG169700 Rh3BG195400 Rh3CG186100 Rh3CG195600 Rh3DG179600 Rh6AG005900 Rh6AG034300 Rh6BG004700 Rh6CG004100 Rh6CG029800 Rh6DG003900
rosa_wichuraiana	Rw0G008950 Rw0G015450 Rw2G024400 Rw6G000650 Rw6G000720 Rw6G002770 Rw6G002930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	561, 867
AccB1I	GGYRCC	2 cut(s)	561, 867
AccI	GTMKAC	3 cut(s)	36, 258, 544
AccIII	TCCGGA	1 cut(s)	873
AciI	CCGC	3 cut(s)	495, 681, 926
AclWI	GGATC	1 cut(s)	510
AcoI	YGGCCR	2 cut(s)	496, 550
AcsI	RAATTY	1 cut(s)	131
AcuI	CTGAAG	1 cut(s)	402
AfaI	GTAC	6 cut(s)	142, 563, 638, 686, 804, 869
AfiI	CCNNNNNNNGG	2 cut(s)	80, 157
AflIII	ACRYGT	2 cut(s)	600, 645
AgsI	TTSAA	4 cut(s)	16, 652, 784, 998
AjiI	CACGTC	1 cut(s)	601
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	2 cut(s)	247, 527
AluI	AGCT	2 cut(s)	247, 527
AlwI	GGATC	1 cut(s)	510
Aor13HI	TCCGGA	1 cut(s)	873
AoxI	GGCC	3 cut(s)	71, 496, 550
ApeKI	GCWGC	1 cut(s)	657
ApoI	RAATTY	1 cut(s)	131
ArsI	GACNNNNNNTTYG	2 cut(s)	431, 463
AseI	ATTAAT	1 cut(s)	462
Asp700I	GAANNNNTTC	2 cut(s)	11, 647
Asp718I	GGTACC	2 cut(s)	561, 867
AspS9I	GGNCC	3 cut(s)	71, 347, 923
AsuHPI	GGTGA	3 cut(s)	901, 928, 1000
AvaII	GGWCC	2 cut(s)	347, 923
AxyI	CCTNAGG	1 cut(s)	624
BanI	GGYRCC	2 cut(s)	561, 867
BbvI	GCAGC	1 cut(s)	669
BccI	CCATC	3 cut(s)	112, 514, 746
BceAI	ACGGC	2 cut(s)	565, 920
BclI	TGATCA	1 cut(s)	316
BfaI	CTAG	2 cut(s)	524, 678
BisI	GCNGC	2 cut(s)	496, 658
BlsI	GCNGC	2 cut(s)	497, 659
Bme18I	GGWCC	2 cut(s)	347, 923
BmgBI	CACGTC	1 cut(s)	601
BmgT120I	GGNCC	3 cut(s)	71, 347, 923
BmiI	GGNNCC	5 cut(s)	54, 299, 348, 563, 869
BmsI	GCATC	2 cut(s)	433, 867
Bsa29I	ATCGAT	2 cut(s)	21, 514
BsaAI	YACGTR	1 cut(s)	34
BsaJI	CCNNGG	1 cut(s)	307
BsaWI	WCCGGW	2 cut(s)	811, 873
BsaXI	ACNNNNNCTCC	3 cut(s)	26, 855, 885
Bsc4I	CCNNNNNNNGG	2 cut(s)	80, 157
Bse118I	RCCGGY	1 cut(s)	736
Bse1I	ACTGG	1 cut(s)	791
Bse21I	CCTNAGG	1 cut(s)	624
Bse3DI	GCAATG	1 cut(s)	412
BseAI	TCCGGA	1 cut(s)	873
BseCI	ATCGAT	2 cut(s)	21, 514
BseDI	CCNNGG	1 cut(s)	307
BseGI	GGATG	3 cut(s)	286, 359, 882
BseLI	CCNNNNNNNGG	2 cut(s)	80, 157
BseMI	GCAATG	1 cut(s)	412
BseMII	CTCAG	2 cut(s)	638, 988
BseNI	ACTGG	1 cut(s)	791
BseXI	GCAGC	1 cut(s)	669
BseYI	CCCAGC	1 cut(s)	536
BshFI	GGCC	3 cut(s)	73, 498, 552
BshNI	GGYRCC	2 cut(s)	561, 867
BshVI	ATCGAT	2 cut(s)	21, 514
BsiSI	CCGG	3 cut(s)	737, 812, 874
BsiWI	CGTACG	1 cut(s)	636
BslFI	GGGAC	2 cut(s)	353, 360
BslI	CCNNNNNNNGG	2 cut(s)	80, 157
BsmFI	GGGAC	2 cut(s)	353, 360
BsmI	GAATGC	1 cut(s)	993
BsnI	GGCC	3 cut(s)	73, 498, 552
Bsp13I	TCCGGA	1 cut(s)	873
Bsp1407I	TGTACA	1 cut(s)	802
Bsp143I	GATC	5 cut(s)	18, 22, 229, 316, 515
BspACI	CCGC	3 cut(s)	495, 681, 926
BspANI	GGCC	3 cut(s)	73, 498, 552
BspCNI	CTCAG	2 cut(s)	637, 987
BspDI	ATCGAT	2 cut(s)	21, 514
BspEI	TCCGGA	1 cut(s)	873
BspHI	TCATGA	1 cut(s)	112
BspLI	GGNNCC	5 cut(s)	54, 299, 348, 563, 869
BspPI	GGATC	1 cut(s)	510
BspT107I	GGYRCC	2 cut(s)	561, 867
BsrDI	GCAATG	1 cut(s)	412
BsrFI	RCCGGY	1 cut(s)	736
BsrGI	TGTACA	1 cut(s)	802
BsrI	ACTGG	1 cut(s)	791
BssAI	RCCGGY	1 cut(s)	736
BssECI	CCNNGG	1 cut(s)	307
BssMI	GATC	5 cut(s)	18, 22, 229, 316, 515
BssNAI	GTATAC	1 cut(s)	37
Bst1107I	GTATAC	1 cut(s)	37
Bst4CI	ACNGT	2 cut(s)	311, 867
Bst6I	CTCTTC	1 cut(s)	926
BstAPI	GCANNNNNTGC	1 cut(s)	666
BstAUI	TGTACA	1 cut(s)	802
BstBAI	YACGTR	1 cut(s)	34
BstC8I	GCNNGC	2 cut(s)	249, 500
BstDEI	CTNAG	2 cut(s)	624, 974
BstDSI	CCRYGG	1 cut(s)	307
BstF5I	GGATG	3 cut(s)	286, 359, 882
BstKTI	GATC	5 cut(s)	21, 25, 232, 319, 518
BstMBI	GATC	5 cut(s)	18, 22, 229, 316, 515
BstMWI	GCNNNNNNNGC	3 cut(s)	533, 666, 722
BstNSI	RCATGY	1 cut(s)	649
BstSNI	TACGTA	1 cut(s)	34
BstV1I	GCAGC	1 cut(s)	669
BstZ17I	GTATAC	1 cut(s)	37
Bsu15I	ATCGAT	2 cut(s)	21, 514
Bsu36I	CCTNAGG	1 cut(s)	624
BsuRI	GGCC	3 cut(s)	73, 498, 552
BsuTUI	ATCGAT	2 cut(s)	21, 514
BtgI	CCRYGG	1 cut(s)	307
BtgZI	GCGATG	1 cut(s)	789
BtrI	CACGTC	1 cut(s)	601
BtsCI	GGATG	3 cut(s)	286, 359, 882
BtsIMutI	CAGTG	1 cut(s)	190
Cac8I	GCNNGC	2 cut(s)	249, 500
CciI	TCATGA	1 cut(s)	112
Cfr10I	RCCGGY	1 cut(s)	736
Cfr13I	GGNCC	3 cut(s)	71, 347, 923
ClaI	ATCGAT	2 cut(s)	21, 514
CseI	GACGC	2 cut(s)	435, 987
Csp6I	GTAC	6 cut(s)	141, 562, 637, 685, 803, 868
CspCI	CAANNNNNGTGG	2 cut(s)	690, 725
CviAII	CATG	6 cut(s)	75, 113, 241, 325, 646, 952
CviQI	GTAC	6 cut(s)	141, 562, 637, 685, 803, 868
DdeI	CTNAG	2 cut(s)	624, 974
DpnI	GATC	5 cut(s)	20, 24, 231, 318, 517
DpnII	GATC	5 cut(s)	18, 22, 229, 316, 515
EaeI	YGGCCR	2 cut(s)	496, 550
Eam1104I	CTCTTC	1 cut(s)	926
EarI	CTCTTC	1 cut(s)	926
Eco105I	TACGTA	1 cut(s)	34
Eco47I	GGWCC	2 cut(s)	347, 923
Eco57I	CTGAAG	1 cut(s)	402
Eco81I	CCTNAGG	1 cut(s)	624
EcoT22I	ATGCAT	1 cut(s)	882
FaeI	CATG	6 cut(s)	78, 116, 244, 328, 649, 955
FalI	AAGNNNNNCTT	2 cut(s)	653, 685
FaqI	GGGAC	2 cut(s)	353, 360
FatI	CATG	6 cut(s)	74, 112, 240, 324, 645, 951
FauI	CCCGC	1 cut(s)	674
FbaI	TGATCA	1 cut(s)	316
FblI	GTMKAC	3 cut(s)	36, 258, 544
Fnu4HI	GCNGC	2 cut(s)	496, 658
FokI	GGATG	3 cut(s)	273, 346, 889
Fsp4HI	GCNGC	2 cut(s)	496, 658
FspBI	CTAG	2 cut(s)	524, 678
GluI	GCNGC	2 cut(s)	496, 658
GsaI	CCCAGC	1 cut(s)	540
HaeIII	GGCC	3 cut(s)	73, 498, 552
HapII	CCGG	3 cut(s)	737, 812, 874
HgaI	GACGC	2 cut(s)	435, 987
Hin1II	CATG	6 cut(s)	78, 116, 244, 328, 649, 955
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
HindIII	AAGCTT	1 cut(s)	245
HinfI	GANTC	3 cut(s)	489, 511, 697
HpaII	CCGG	3 cut(s)	737, 812, 874
HphI	GGTGA	3 cut(s)	901, 928, 1000
Hpy166II	GTNNAC	5 cut(s)	37, 259, 545, 610, 961
Hpy188I	TCNGA	7 cut(s)	97, 421, 468, 478, 751, 829, 977
Hpy8I	GTNNAC	5 cut(s)	37, 259, 545, 610, 961
HpyCH4III	ACNGT	2 cut(s)	311, 867
HpyCH4IV	ACGT	3 cut(s)	33, 600, 759
HpyCH4V	TGCA	5 cut(s)	78, 405, 410, 880, 901
HpyF10VI	GCNNNNNNNGC	3 cut(s)	533, 666, 722
HpyF3I	CTNAG	2 cut(s)	624, 974
HpySE526I	ACGT	3 cut(s)	33, 600, 759
Hsp92II	CATG	6 cut(s)	78, 116, 244, 328, 649, 955
Kpn2I	TCCGGA	1 cut(s)	873
KpnI	GGTACC	2 cut(s)	565, 871
Ksp22I	TGATCA	1 cut(s)	316
Kzo9I	GATC	5 cut(s)	18, 22, 229, 316, 515
Lsp1109I	GCAGC	1 cut(s)	669
LweI	GCATC	2 cut(s)	433, 867
MaeI	CTAG	2 cut(s)	524, 678
MaeII	ACGT	3 cut(s)	33, 600, 759
MaeIII	GTNAC	3 cut(s)	190, 335, 447
MalI	GATC	5 cut(s)	20, 24, 231, 318, 517
MboI	GATC	5 cut(s)	18, 22, 229, 316, 515
MboII	GAAGA	2 cut(s)	53, 943
MluCI	AATT	3 cut(s)	131, 430, 717
MlyI	GAGTC	1 cut(s)	706
MmeI	TCCRAC	1 cut(s)	852
MnlI	CCTC	7 cut(s)	43, 162, 513, 633, 774, 879, 881
Mph1103I	ATGCAT	1 cut(s)	882
MroI	TCCGGA	1 cut(s)	873
MroXI	GAANNNNTTC	2 cut(s)	11, 647
MseI	TTAA	3 cut(s)	429, 462, 983
MspI	CCGG	3 cut(s)	737, 812, 874
Mva1269I	GAATGC	1 cut(s)	993
MwoI	GCNNNNNNNGC	3 cut(s)	533, 666, 722
NdeII	GATC	5 cut(s)	18, 22, 229, 316, 515
NlaIII	CATG	6 cut(s)	78, 116, 244, 328, 649, 955
NlaIV	GGNNCC	5 cut(s)	54, 299, 348, 563, 869
NmeAIII	GCCGAG	1 cut(s)	751
NmuCI	GTSAC	2 cut(s)	335, 447
NsiI	ATGCAT	1 cut(s)	882
NspI	RCATGY	1 cut(s)	649
PagI	TCATGA	1 cut(s)	112
PciI	ACATGT	1 cut(s)	645
PctI	GAATGC	1 cut(s)	993
PdmI	GAANNNNTTC	2 cut(s)	11, 647
PfeI	GAWTC	2 cut(s)	489, 511
Pfl23II	CGTACG	1 cut(s)	636
PkrI	GCNGC	2 cut(s)	497, 659
PleI	GAGTC	1 cut(s)	705
PpsI	GAGTC	1 cut(s)	705
Ppu21I	YACGTR	1 cut(s)	34
PscI	ACATGT	1 cut(s)	645
PshBI	ATTAAT	1 cut(s)	462
PspFI	CCCAGC	1 cut(s)	536
PspLI	CGTACG	1 cut(s)	636
PspN4I	GGNNCC	5 cut(s)	54, 299, 348, 563, 869
PspPI	GGNCC	3 cut(s)	71, 347, 923
RsaI	GTAC	6 cut(s)	142, 563, 638, 686, 804, 869
RsaNI	GTAC	6 cut(s)	141, 562, 637, 685, 803, 868
SalI	GTCGAC	1 cut(s)	257
SaqAI	TTAA	3 cut(s)	429, 462, 983
SatI	GCNGC	2 cut(s)	496, 658
Sau3AI	GATC	5 cut(s)	18, 22, 229, 316, 515
Sau96I	GGNCC	3 cut(s)	71, 347, 923
SchI	GAGTC	1 cut(s)	706
SfaNI	GCATC	2 cut(s)	433, 867
SinI	GGWCC	2 cut(s)	347, 923
SnaBI	TACGTA	1 cut(s)	34
Sse9I	AATT	3 cut(s)	131, 430, 717
SsiI	CCGC	3 cut(s)	495, 681, 926
SspI	AATATT	1 cut(s)	60
SspMI	CTAG	2 cut(s)	524, 678
TaaI	ACNGT	2 cut(s)	311, 867
TaiI	ACGT	3 cut(s)	36, 603, 762
TaqI	TCGA	6 cut(s)	21, 232, 258, 509, 514, 857
TasI	AATT	3 cut(s)	131, 430, 717
TatI	WGTACW	1 cut(s)	802
TauI	GCSGC	1 cut(s)	498
TfiI	GAWTC	2 cut(s)	489, 511
Tru1I	TTAA	3 cut(s)	429, 462, 983
Tru9I	TTAA	3 cut(s)	429, 462, 983
TscAI	CASTG	1 cut(s)	190
TseFI	GTSAC	2 cut(s)	335, 447
TseI	GCWGC	1 cut(s)	657
Tsp45I	GTSAC	2 cut(s)	335, 447
TspDTI	ATGAA	4 cut(s)	81, 101, 257, 313
TspGWI	ACGGA	1 cut(s)	955
TspRI	CASTG	1 cut(s)	190
VpaK11BI	GGWCC	2 cut(s)	347, 923
VspI	ATTAAT	1 cut(s)	462
XapI	RAATTY	1 cut(s)	131
XceI	RCATGY	1 cut(s)	649
XmiI	GTMKAC	3 cut(s)	36, 258, 544
XmnI	GAANNNNTTC	2 cut(s)	11, 647
XspI	CTAG	2 cut(s)	524, 678
Zsp2I	ATGCAT	1 cut(s)	882

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.