Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001296

Physical Location & Seq

Genomic Coordinates Forward (+)

39038174 .. 39038898

Gene Structure 725 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGGGCGAGACCGCGGCTGCTACGCCGTCGTTTCATCCACCAAGCTCGCCGTGAAGCCCACCAGACCCATCAGGTCCGCCGTGAAACCCTATGAGGACGGTGGGGATCTGAATATTGGGGAGTTCGAGAAACACACAAGGGGGATCGGCATGAAATTGCTGATGAAGATGGGCTATAACGGACGCGGACTCGGCAGAAACGAGGAAGGTATTGTGAGCCCAATTGAAGCCGAATTGAGGCCCAAAAATGAAGGTCTTGGTTTTGATTACAAGGAGGGGACTAAGCTGCGGCGGCGTCCCACATCGTTTGTGAAAGCCAAGGCGGTGCAGAAAAGTGTGGGTAATGGTGACAAAGATCACAAGAAGACCAAAACAGAAATAGCCAAAAAACCAAGCAGCCTAAACACTAGTACAGTGGAAGGACACAAGCCCAACGAGCAGCCTAATGAGGCAATTACCAGTGCCGCCGGGATGGGGAAGAAGACGAGTACAAAAGGTGTCGATTTGCTGGAAAAGGTGATGGCTGATATGAGAAGACCTCTTGATGGAATCTTGGCCGACCTTGAGAATTTGAGTTTGAAAGATACAACCTCCAGGTGCATCTTAGCTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000375 GO:0000377 GO:0000390 GO:0000398 GO:0000781 GO:0000784 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022411 GO:0030154 GO:0030198 GO:0031012 GO:0031333 GO:0031974 GO:0031981 GO:0032091 GO:0032502 GO:0032984 GO:0032988 GO:0032991 GO:0034641 GO:0042752 GO:0043021 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043393 GO:0043933 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044421 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0046483 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0051098 GO:0051100 GO:0051128 GO:0051129 GO:0065007 GO:0065009 GO:0070013 GO:0070990 GO:0071008 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0098687 GO:1901360 GO:1902494 GO:1990446 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch GCFC TIP_N

Protein Analysis

204

Amino Acids

22.26

Weight (kDa)

9.69

Isoelectric Point (pI)

36.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G-patch	PF01585	46 - 87	3.3e-16	G-patch domain
G-patch_2	PF12656	49 - 90	3.2e-07	G-patch domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001296)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13670
rosa_chinensis	RchiOBHm_Chr4g0414401 RchiOBHm_Chr4g0414501
rosa_laevigata	RLG00000008128 RLG00000008130 RLG00000008132 RLG00000008133 RLG00000008135 RLG00000008148 RLG00000008149 RLG00000013053
rosa_multiflora	Rmu_co8302837.1_g000001 Rmu_sc0001192.1_g000007 Rmu_sc0001192.1_g000008 Rmu_sc0001192.1_g000015 Rmu_sc0001432.1_g000009 Rmu_sc0006138.1_g000003 Rmu_sc0006138.1_g000004 Rmu_sc0006138.1_g000006 Rmu_sc0007034.1_g000001 Rmu_sc0011089.1_g000001 Rmu_sc0012211.1_g000001 Rmu_sc0012211.1_g000003
rosa_roxburghii	Rroxscaffold_1G00012060 Rroxscaffold_5G00358310 Rroxscaffold_5G00358450 Rroxscaffold_7G00187960
rosa_rugosa	Rorug02G0278500 Rorug04G0128000 Rorug04G0129200
rosa_samantha	Rh4AG186200 Rh4AG186400 Rh4AG187300 Rh4AG187400 Rh4AG187500 Rh4BG185200 Rh4CG198500 Rh4CG198700 Rh4CG199800 Rh4DG183000 Rh4DG184200 Rh4DG184800 Rh4DG185800 Rh4DG185900 Rh4DG186100 Rh4DG186300 Rh4DG186400 Rh6AG244700 Rh6BG247100 Rh6CG248700 Rh6CG248900
rosa_wichuraiana	Rw4G015900 Rw4G016010 Rw4G016030 Rw6G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	15, 186
AciI	CCGC	8 cut(s)	13, 15, 78, 186, 289, 292, 323, 465
AclWI	GGATC	2 cut(s)	114, 152
AcoI	YGGCCR	1 cut(s)	555
AcsI	RAATTY	1 cut(s)	568
AcyI	GRCGYC	1 cut(s)	295
AfaI	GTAC	2 cut(s)	412, 490
AfiI	CCNNNNNNNGG	3 cut(s)	237, 474, 545
AgsI	TTSAA	2 cut(s)	227, 580
AhlI	ACTAGT	1 cut(s)	407
AjnI	CCWGG	1 cut(s)	593
AluBI	AGCT	3 cut(s)	46, 286, 608
AluI	AGCT	3 cut(s)	46, 286, 608
Alw26I	GTCTC	1 cut(s)	3
AlwI	GGATC	2 cut(s)	114, 152
AoxI	GGCC	2 cut(s)	239, 555
ApeKI	GCWGC	4 cut(s)	18, 286, 396, 439
ApoI	RAATTY	1 cut(s)	568
AspS9I	GGNCC	2 cut(s)	75, 240
AsuC2I	CCSGG	1 cut(s)	469
AsuHPI	GGTGA	2 cut(s)	359, 529
AvaII	GGWCC	1 cut(s)	75
BanII	GRGCYC	1 cut(s)	221
BbsI	GAAGAC	3 cut(s)	371, 488, 541
BbvI	GCAGC	4 cut(s)	5, 273, 408, 451
BccI	CCATC	5 cut(s)	77, 163, 466, 514, 539
BceAI	ACGGC	3 cut(s)	11, 35, 65
BciT130I	CCWGG	1 cut(s)	595
BcnI	CCSGG	1 cut(s)	469
BcoDI	GTCTC	1 cut(s)	3
BcuI	ACTAGT	1 cut(s)	407
BfaI	CTAG	1 cut(s)	408
BisI	GCNGC	8 cut(s)	16, 19, 287, 290, 293, 397, 440, 465
BlsI	GCNGC	8 cut(s)	17, 20, 288, 291, 294, 398, 441, 466
Bme1390I	CCNGG	2 cut(s)	469, 595
Bme18I	GGWCC	1 cut(s)	75
BmgT120I	GGNCC	2 cut(s)	75, 240
BmrFI	CCNGG	2 cut(s)	469, 595
BmsI	GCATC	1 cut(s)	609
BpiI	GAAGAC	3 cut(s)	371, 488, 541
BplI	GAGNNNNNCTC	2 cut(s)	523, 555
BpmI	CTGGAG	1 cut(s)	577
BpuEI	CTTGAG	1 cut(s)	584
BpuMI	CCSGG	1 cut(s)	469
BsaHI	GRCGYC	1 cut(s)	295
BsaI	GGTCTC	1 cut(s)	3
BsaJI	CCNNGG	2 cut(s)	13, 318
Bsc4I	CCNNNNNNNGG	3 cut(s)	237, 474, 545
Bse1I	ACTGG	1 cut(s)	459
BseBI	CCWGG	1 cut(s)	595
BseDI	CCNNGG	2 cut(s)	13, 318
BseGI	GGATG	2 cut(s)	35, 477
BseLI	CCNNNNNNNGG	3 cut(s)	237, 474, 545
BseNI	ACTGG	1 cut(s)	459
BseXI	GCAGC	4 cut(s)	5, 273, 408, 451
BsgI	GTGCAG	1 cut(s)	347
Bsh1236I	CGCG	2 cut(s)	15, 186
BshFI	GGCC	2 cut(s)	241, 557
BsiSI	CCGG	1 cut(s)	468
BslFI	GGGAC	2 cut(s)	282, 292
BslI	CCNNNNNNNGG	3 cut(s)	237, 474, 545
BsmAI	GTCTC	1 cut(s)	3
BsmFI	GGGAC	2 cut(s)	282, 292
BsnI	GGCC	2 cut(s)	241, 557
Bso31I	GGTCTC	1 cut(s)	3
Bsp1286I	GDGCHC	1 cut(s)	221
Bsp143I	GATC	3 cut(s)	106, 144, 355
BspACI	CCGC	8 cut(s)	13, 15, 78, 186, 289, 292, 323, 465
BspANI	GGCC	2 cut(s)	241, 557
BspFNI	CGCG	2 cut(s)	15, 186
BspPI	GGATC	2 cut(s)	114, 152
BspTNI	GGTCTC	1 cut(s)	3
BsrI	ACTGG	1 cut(s)	459
BssECI	CCNNGG	2 cut(s)	13, 318
BssMI	GATC	3 cut(s)	106, 144, 355
BssNI	GRCGYC	1 cut(s)	295
BssT1I	CCWWGG	1 cut(s)	318
Bst2UI	CCWGG	1 cut(s)	595
Bst4CI	ACNGT	2 cut(s)	101, 415
BstACI	GRCGYC	1 cut(s)	295
BstC8I	GCNNGC	1 cut(s)	48
BstDEI	CTNAG	2 cut(s)	282, 604
BstDSI	CCRYGG	1 cut(s)	13
BstF5I	GGATG	2 cut(s)	35, 477
BstFNI	CGCG	2 cut(s)	15, 186
BstKTI	GATC	3 cut(s)	109, 147, 358
BstMAI	GTCTC	1 cut(s)	3
BstMBI	GATC	3 cut(s)	106, 144, 355
BstMWI	GCNNNNNNNGC	3 cut(s)	192, 292, 436
BstNI	CCWGG	1 cut(s)	595
BstSCI	CCNGG	2 cut(s)	467, 593
BstUI	CGCG	2 cut(s)	15, 186
BstV1I	GCAGC	4 cut(s)	5, 273, 408, 451
BstV2I	GAAGAC	3 cut(s)	371, 488, 541
BstX2I	RGATCY	1 cut(s)	106
BstYI	RGATCY	1 cut(s)	106
BsuRI	GGCC	2 cut(s)	241, 557
BtgI	CCRYGG	1 cut(s)	13
BtsCI	GGATG	2 cut(s)	35, 477
BtsIMutI	CAGTG	2 cut(s)	420, 466
Cac8I	GCNNGC	1 cut(s)	48
Cfr13I	GGNCC	2 cut(s)	75, 240
Cfr42I	CCGCGG	1 cut(s)	16
CseI	GACGC	2 cut(s)	192, 284
Csp6I	GTAC	2 cut(s)	411, 489
CspCI	CAANNNNNGTGG	2 cut(s)	289, 324
CviAII	CATG	1 cut(s)	151
CviQI	GTAC	2 cut(s)	411, 489
DdeI	CTNAG	2 cut(s)	282, 604
DpnI	GATC	3 cut(s)	108, 146, 357
DpnII	GATC	3 cut(s)	106, 144, 355
EaeI	YGGCCR	1 cut(s)	555
EciI	GGCGGA	1 cut(s)	67
Eco130I	CCWWGG	1 cut(s)	318
Eco24I	GRGCYC	1 cut(s)	221
Eco31I	GGTCTC	1 cut(s)	3
Eco47I	GGWCC	1 cut(s)	75
EcoRII	CCWGG	1 cut(s)	593
EcoT14I	CCWWGG	1 cut(s)	318
EcoT38I	GRGCYC	1 cut(s)	221
ErhI	CCWWGG	1 cut(s)	318
FaeI	CATG	1 cut(s)	154
FaiI	YATR	5 cut(s)	93, 152, 177, 530, 611
FaqI	GGGAC	2 cut(s)	282, 292
FatI	CATG	1 cut(s)	150
Fnu4HI	GCNGC	8 cut(s)	16, 19, 287, 290, 293, 397, 440, 465
FokI	GGATG	2 cut(s)	22, 484
FriOI	GRGCYC	1 cut(s)	221
Fsp4HI	GCNGC	8 cut(s)	16, 19, 287, 290, 293, 397, 440, 465
FspBI	CTAG	1 cut(s)	408
GluI	GCNGC	8 cut(s)	16, 19, 287, 290, 293, 397, 440, 465
GsuI	CTGGAG	1 cut(s)	577
HaeIII	GGCC	2 cut(s)	241, 557
HapII	CCGG	1 cut(s)	468
HgaI	GACGC	2 cut(s)	192, 284
Hin1I	GRCGYC	1 cut(s)	295
Hin1II	CATG	1 cut(s)	154
HinfI	GANTC	2 cut(s)	189, 549
HpaII	CCGG	1 cut(s)	468
HphI	GGTGA	2 cut(s)	359, 529
Hpy188I	TCNGA	1 cut(s)	111
Hpy188III	TCNNGA	2 cut(s)	127, 542
Hpy99I	CGWCG	1 cut(s)	32
HpyAV	CCTTC	3 cut(s)	200, 245, 413
HpyCH4III	ACNGT	2 cut(s)	101, 415
HpyCH4V	TGCA	2 cut(s)	328, 600
HpyF10VI	GCNNNNNNNGC	3 cut(s)	192, 292, 436
HpyF3I	CTNAG	2 cut(s)	282, 604
Hsp92I	GRCGYC	1 cut(s)	295
Hsp92II	CATG	1 cut(s)	154
KspI	CCGCGG	1 cut(s)	16
Kzo9I	GATC	3 cut(s)	106, 144, 355
LpnPI	CCDG	7 cut(s)	58, 76, 472, 481, 494, 580, 607
Lsp1109I	GCAGC	4 cut(s)	5, 273, 408, 451
LweI	GCATC	1 cut(s)	609
MaeI	CTAG	1 cut(s)	408
MaeIII	GTNAC	1 cut(s)	347
MalI	GATC	3 cut(s)	108, 146, 357
MboI	GATC	3 cut(s)	106, 144, 355
MboII	GAAGA	5 cut(s)	178, 376, 490, 493, 546
MfeI	CAATTG	1 cut(s)	222
MflI	RGATCY	1 cut(s)	106
MhlI	GDGCHC	1 cut(s)	221
MluCI	AATT	5 cut(s)	155, 222, 233, 453, 568
MlyI	GAGTC	1 cut(s)	183
MnlI	CCTC	7 cut(s)	88, 196, 231, 268, 442, 549, 601
MspA1I	CMGCKG	1 cut(s)	15
MspI	CCGG	1 cut(s)	468
MspR9I	CCNGG	2 cut(s)	469, 595
MunI	CAATTG	1 cut(s)	222
MvaI	CCWGG	1 cut(s)	595
MvnI	CGCG	2 cut(s)	15, 186
MwoI	GCNNNNNNNGC	3 cut(s)	192, 292, 436
NciI	CCSGG	1 cut(s)	469
NdeII	GATC	3 cut(s)	106, 144, 355
NlaIII	CATG	1 cut(s)	154
NmeAIII	GCCGAG	1 cut(s)	171
NmuCI	GTSAC	1 cut(s)	347
PcsI	WCGNNNNNNNCGW	1 cut(s)	198
PfeI	GAWTC	1 cut(s)	549
PkrI	GCNGC	8 cut(s)	17, 20, 288, 291, 294, 398, 441, 466
PleI	GAGTC	1 cut(s)	183
PpsI	GAGTC	1 cut(s)	183
Psp6I	CCWGG	1 cut(s)	593
PspGI	CCWGG	1 cut(s)	593
PspPI	GGNCC	2 cut(s)	75, 240
PsuI	RGATCY	1 cut(s)	106
RsaI	GTAC	2 cut(s)	412, 490
RsaNI	GTAC	2 cut(s)	411, 489
SacII	CCGCGG	1 cut(s)	16
SatI	GCNGC	8 cut(s)	16, 19, 287, 290, 293, 397, 440, 465
Sau3AI	GATC	3 cut(s)	106, 144, 355
Sau96I	GGNCC	2 cut(s)	75, 240
SchI	GAGTC	1 cut(s)	183
ScrFI	CCNGG	2 cut(s)	469, 595
SduI	GDGCHC	1 cut(s)	221
SfaNI	GCATC	1 cut(s)	609
Sfr303I	CCGCGG	1 cut(s)	16
SgrBI	CCGCGG	1 cut(s)	16
SinI	GGWCC	1 cut(s)	75
SmlI	CTYRAG	1 cut(s)	563
SmoI	CTYRAG	1 cut(s)	563
SpeI	ACTAGT	1 cut(s)	407
Sse9I	AATT	5 cut(s)	155, 222, 233, 453, 568
SsiI	CCGC	8 cut(s)	13, 15, 78, 186, 289, 292, 323, 465
SspI	AATATT	1 cut(s)	115
SspMI	CTAG	1 cut(s)	408
StyD4I	CCNGG	2 cut(s)	467, 593
StyI	CCWWGG	1 cut(s)	318
TaaI	ACNGT	2 cut(s)	101, 415
TaqI	TCGA	2 cut(s)	126, 501
TasI	AATT	5 cut(s)	155, 222, 233, 453, 568
TatI	WGTACW	2 cut(s)	410, 488
TauI	GCSGC	4 cut(s)	18, 292, 295, 467
TfiI	GAWTC	1 cut(s)	549
TscAI	CASTG	2 cut(s)	420, 466
TseFI	GTSAC	1 cut(s)	347
TseI	GCWGC	4 cut(s)	18, 286, 396, 439
Tsp45I	GTSAC	1 cut(s)	347
TspDTI	ATGAA	4 cut(s)	24, 167, 179, 264
TspGWI	ACGGA	1 cut(s)	195
TspRI	CASTG	2 cut(s)	420, 466
VpaK11BI	GGWCC	1 cut(s)	75
XapI	RAATTY	1 cut(s)	568
XspI	CTAG	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.