Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000599

Physical Location & Seq

Genomic Coordinates Reverse (-)

82833977 .. 82836511

Gene Structure 2535 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGAATGCCGGATGTGCAGCTGTCTCACTATCTGAAAATGATATTATTTACACGTATGACACGTCTCTACGGGAAAACACAAATATTTTGTGCACTTCAAGCGTGAATGATGACAGTGAAAGCACAAACTCAATGGTGCATATTGGACAGGATAAGATAAAAGAGAGTCCAAAGCCAAATACGAGCTGGGAAAATGAATTAGCAGATTTTCCTGCACTGAGTTTTCTGAAAGATTCAAAGAATGGGCGGCATATATCAAGACCTCGTGAAGTTATAGATGCAAGGAATGATATTCCCATAGTAATGATGGAGCAAGAGATAATGGAGGCTATAAATGAGCATTCCACTGTAATTATACGCGGAGAGACTGGATGTGGTAAAACAACCCAAGTTCCTCAGTTTCTTTATGAAGTTGGCATCGGTTCAAGCGGGTGCCCTCTTGGAAGTGGTATTATTGGTGTTACTCAACCCCGCTGCATTGCAGTCACTGCAACTGCTAAGCGTGTGGCATATGAGCTTGGCCTACAATTGGGTGAGGAGGTTGGATTTCAATATAGATATGACAAAAAGATTGGTGAAAGTTGCTCTATCAAATTCATGACAGATGGAATATTACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

206

Amino Acids

22.56

Weight (kDa)

4.87

Isoelectric Point (pI)

33.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33390 AT1G33390
fragaria_vesca	FvH4_3g40090 FvH4_3g40090 FvH4_3g40090 FvH4_6g48600
malus_domestica	MD04G1241500.v1.1 MD05G1017800.v1.1
prunus_persica	Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1
pyrus_communis	pycom04g21310 pycom05g01000 pycom05g01050 pycom11g20470
rosa_chinensis	RchiOBHm_Chr2g0168421 RchiOBHm_Chr2g0168431 RchiOBHm_Chr2g0168441 RchiOBHm_Chr2g0168451 RchiOBHm_Chr2g0168461 RchiOBHm_Chr4g0407811 RchiOBHm_Chr7g0220161 RchiOBHm_Chr7g0220171 RchiOBHm_Chr7g0220481
rosa_laevigata	RLG00000002253 RLG00000008696 RLG00000021781
rosa_multiflora	Rmu_co8232135.1_g000001 Rmu_sc0000966.1_g000007 Rmu_sc0003573.1_g000032 Rmu_sc0006361.1_g000012 Rmu_sc0006361.1_g000013 Rmu_sc0012607.1_g000001 Rmu_sc0016657.1_g000009
rosa_roxburghii	Rroxscaffold_2G00083000 Rroxscaffold_2G00083010 Rroxscaffold_3G00239750 Rroxscaffold_5G00352370
rosa_rugosa	Rorug02G0533800 Rorug02G0533800 Rorug04G0081400 Rorug07G0189900 Rorug07G0190000
rosa_samantha	Rh2AG603500 Rh2AG603700 Rh2BG616600 Rh2BG616700 Rh2BG616800 Rh2CG584500 Rh2CG584600 Rh2CG584700 Rh2DG627100 Rh2DG627200 Rh4AG146500 Rh4BG144000 Rh4CG153000 Rh4DG140500 Rh7AG332900 Rh7BG324300 Rh7BG324400 Rh7BG324500 Rh7CG350400 Rh7DG329000
rosa_wichuraiana	Rw0G022710 Rw2G050050 Rw4G011990 Rw7G028060 Rw7G028070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	432
AccII	CGCG	1 cut(s)	360
AciI	CCGC	4 cut(s)	247, 360, 429, 472
AcsI	RAATTY	1 cut(s)	593
AfiI	CCNNNNNNNGG	1 cut(s)	529
AflIII	ACRYGT	2 cut(s)	51, 60
AgsI	TTSAA	4 cut(s)	99, 237, 426, 551
AjiI	CACGTC	1 cut(s)	63
AluBI	AGCT	3 cut(s)	20, 186, 517
AluI	AGCT	3 cut(s)	20, 186, 517
Alw21I	GWGCWC	1 cut(s)	95
Alw26I	GTCTC	3 cut(s)	28, 69, 359
Alw44I	GTGCAC	1 cut(s)	91
AlwNI	CAGNNNCTG	1 cut(s)	488
AoxI	GGCC	1 cut(s)	520
ApaLI	GTGCAC	1 cut(s)	91
ApeKI	GCWGC	2 cut(s)	17, 474
ApoI	RAATTY	1 cut(s)	593
AsuHPI	GGTGA	2 cut(s)	545, 587
BaeGI	GKGCMC	2 cut(s)	95, 437
BanI	GGYRCC	1 cut(s)	432
BauI	CACGAG	1 cut(s)	264
Bbv12I	GWGCWC	1 cut(s)	95
BbvI	GCAGC	2 cut(s)	29, 461
BccI	CCATC	2 cut(s)	301, 599
BcoDI	GTCTC	3 cut(s)	28, 69, 359
BisI	GCNGC	3 cut(s)	18, 248, 475
BlpI	GCTNAGC	1 cut(s)	498
BlsI	GCNGC	3 cut(s)	19, 249, 476
BmgBI	CACGTC	1 cut(s)	63
BmiI	GGNNCC	1 cut(s)	434
BmsI	GCATC	2 cut(s)	268, 426
Bpu1102I	GCTNAGC	1 cut(s)	498
BsaAI	YACGTR	1 cut(s)	54
Bsc4I	CCNNNNNNNGG	1 cut(s)	529
Bse1I	ACTGG	1 cut(s)	373
Bse3DI	GCAATG	1 cut(s)	477
BseGI	GGATG	2 cut(s)	17, 377
BseLI	CCNNNNNNNGG	1 cut(s)	529
BseMI	GCAATG	1 cut(s)	477
BseMII	CTCAG	2 cut(s)	209, 410
BseNI	ACTGG	1 cut(s)	373
BseRI	GAGGAG	1 cut(s)	551
BseSI	GKGCMC	2 cut(s)	95, 437
BseXI	GCAGC	2 cut(s)	29, 461
BseYI	CCCAGC	1 cut(s)	186
BsgI	GTGCAG	2 cut(s)	36, 198
Bsh1236I	CGCG	1 cut(s)	360
BshFI	GGCC	1 cut(s)	522
BshNI	GGYRCC	1 cut(s)	432
BsiHKAI	GWGCWC	1 cut(s)	95
BsiSI	CCGG	1 cut(s)	9
BslI	CCNNNNNNNGG	1 cut(s)	529
BsmAI	GTCTC	3 cut(s)	28, 69, 359
BsmBI	CGTCTC	1 cut(s)	69
BsmI	GAATGC	2 cut(s)	10, 340
BsnI	GGCC	1 cut(s)	522
Bsp1286I	GDGCHC	2 cut(s)	95, 437
Bsp1720I	GCTNAGC	1 cut(s)	498
BspACI	CCGC	4 cut(s)	247, 360, 429, 472
BspANI	GGCC	1 cut(s)	522
BspCNI	CTCAG	2 cut(s)	210, 409
BspFNI	CGCG	1 cut(s)	360
BspHI	TCATGA	1 cut(s)	597
BspLI	GGNNCC	1 cut(s)	434
BspT107I	GGYRCC	1 cut(s)	432
BsrDI	GCAATG	1 cut(s)	477
BsrI	ACTGG	1 cut(s)	373
BssSI	CACGAG	1 cut(s)	264
Bst2BI	CACGAG	1 cut(s)	264
Bst4CI	ACNGT	2 cut(s)	116, 349
BstAPI	GCANNNNNTGC	1 cut(s)	488
BstBAI	YACGTR	1 cut(s)	54
BstDEI	CTNAG	3 cut(s)	218, 396, 498
BstF5I	GGATG	2 cut(s)	17, 377
BstFNI	CGCG	1 cut(s)	360
BstMAI	GTCTC	3 cut(s)	28, 69, 359
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 99, 488
BstSLI	GKGCMC	2 cut(s)	95, 437
BstUI	CGCG	1 cut(s)	360
BstV1I	GCAGC	2 cut(s)	29, 461
BsuRI	GGCC	1 cut(s)	522
BtrI	CACGTC	1 cut(s)	63
BtsCI	GGATG	2 cut(s)	17, 377
BtsI	GCAGTG	1 cut(s)	486
BtsIMutI	CAGTG	4 cut(s)	121, 215, 345, 486
CaiI	CAGNNNCTG	1 cut(s)	488
CciI	TCATGA	1 cut(s)	597
CviAII	CATG	1 cut(s)	598
CviJI	RGCY	6 cut(s)	20, 175, 186, 329, 517, 522
CviKI_1	RGCY	6 cut(s)	20, 175, 186, 329, 517, 522
DdeI	CTNAG	3 cut(s)	218, 396, 498
Esp3I	CGTCTC	1 cut(s)	69
FaeI	CATG	1 cut(s)	601
FatI	CATG	1 cut(s)	597
FauI	CCCGC	2 cut(s)	422, 479
FauNDI	CATATG	1 cut(s)	511
Fnu4HI	GCNGC	3 cut(s)	18, 248, 475
FokI	GGATG	2 cut(s)	24, 384
Fsp4HI	GCNGC	3 cut(s)	18, 248, 475
GluI	GCNGC	3 cut(s)	18, 248, 475
GsaI	CCCAGC	1 cut(s)	190
HaeIII	GGCC	1 cut(s)	522
HapII	CCGG	1 cut(s)	9
Hin1II	CATG	1 cut(s)	601
HinfI	GANTC	2 cut(s)	166, 233
HpaII	CCGG	1 cut(s)	9
HphI	GGTGA	2 cut(s)	545, 587
Hpy166II	GTNNAC	1 cut(s)	93
Hpy188I	TCNGA	2 cut(s)	34, 228
Hpy188III	TCNNGA	3 cut(s)	258, 266, 598
Hpy8I	GTNNAC	1 cut(s)	93
HpyCH4III	ACNGT	2 cut(s)	116, 349
HpyCH4IV	ACGT	2 cut(s)	53, 62
HpyCH4V	TGCA	8 cut(s)	17, 93, 139, 215, 281, 477, 482, 491
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 99, 488
HpyF3I	CTNAG	3 cut(s)	218, 396, 498
HpySE526I	ACGT	2 cut(s)	53, 62
Hsp92II	CATG	1 cut(s)	601
LmnI	GCTCC	1 cut(s)	310
LpnPI	CCDG	5 cut(s)	22, 134, 172, 225, 354
Lsp1109I	GCAGC	2 cut(s)	29, 461
LweI	GCATC	2 cut(s)	268, 426
MaeII	ACGT	2 cut(s)	53, 62
MaeIII	GTNAC	2 cut(s)	460, 484
MfeI	CAATTG	1 cut(s)	527
MhlI	GDGCHC	2 cut(s)	95, 437
MluCI	AATT	4 cut(s)	197, 351, 527, 593
MlyI	GAGTC	1 cut(s)	175
MmeI	TCCRAC	1 cut(s)	523
MnlI	CCTC	6 cut(s)	273, 319, 405, 447, 529, 532
MslI	CAYNNNNRTG	1 cut(s)	302
MspA1I	CMGCKG	2 cut(s)	20, 474
MspI	CCGG	1 cut(s)	9
MunI	CAATTG	1 cut(s)	527
Mva1269I	GAATGC	2 cut(s)	10, 340
MvnI	CGCG	1 cut(s)	360
MwoI	GCNNNNNNNGC	3 cut(s)	14, 99, 488
NdeI	CATATG	1 cut(s)	511
NlaIII	CATG	1 cut(s)	601
NlaIV	GGNNCC	1 cut(s)	434
NmuCI	GTSAC	1 cut(s)	484
PagI	TCATGA	1 cut(s)	597
PcsI	WCGNNNNNNNCGW	1 cut(s)	59
PctI	GAATGC	2 cut(s)	10, 340
PfeI	GAWTC	1 cut(s)	233
PkrI	GCNGC	3 cut(s)	19, 249, 476
PleI	GAGTC	1 cut(s)	174
PpsI	GAGTC	1 cut(s)	174
Ppu21I	YACGTR	1 cut(s)	54
PspFI	CCCAGC	1 cut(s)	186
PspN4I	GGNNCC	1 cut(s)	434
PstNI	CAGNNNCTG	1 cut(s)	488
PvuII	CAGCTG	1 cut(s)	20
RseI	CAYNNNNRTG	1 cut(s)	302
SatI	GCNGC	3 cut(s)	18, 248, 475
SchI	GAGTC	1 cut(s)	175
SduI	GDGCHC	2 cut(s)	95, 437
SetI	ASST	7 cut(s)	22, 56, 65, 188, 265, 519, 543
SfaNI	GCATC	2 cut(s)	268, 426
SmiMI	CAYNNNNRTG	1 cut(s)	302
Sse9I	AATT	4 cut(s)	197, 351, 527, 593
SsiI	CCGC	4 cut(s)	247, 360, 429, 472
SspI	AATATT	2 cut(s)	85, 612
TaaI	ACNGT	2 cut(s)	116, 349
TaiI	ACGT	2 cut(s)	56, 65
TasI	AATT	4 cut(s)	197, 351, 527, 593
TauI	GCSGC	1 cut(s)	250
TfiI	GAWTC	1 cut(s)	233
TscAI	CASTG	4 cut(s)	121, 222, 352, 493
TseFI	GTSAC	1 cut(s)	484
TseI	GCWGC	2 cut(s)	17, 474
Tsp45I	GTSAC	1 cut(s)	484
TspDTI	ATGAA	4 cut(s)	17, 210, 423, 586
TspRI	CASTG	4 cut(s)	121, 222, 352, 493
VneI	GTGCAC	1 cut(s)	91
XapI	RAATTY	1 cut(s)	593
XcmI	CCANNNNNNNNNTGG	2 cut(s)	183, 304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.