RchiOBHm_Chr7g0242461

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001941
Physical Location & Seq
Forward (+)
68539947 .. 68541282
1336 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21730

Sequence Viewer

Length: 450 bp
ATGGGAGTTTTCTTCTGGTTGGATGGCATGACATTGTCGGTGTCGGGTCTGACTTGTGGATCTATTGGTATTGACGACTATTGTGATGGTGATCGGGTTTGCTCTCTGGCGTTTGTCGCGGAAGGTGGAGAATGGATTGGTTCCCAATCTGGGAAGCTGCGGACGTCCAGTGGTGTGGGGTGGCTGGGTTCGATCAAGTCTGGTGTGATGGAAGCGGTCGTTACAAGATCGGCGCTCTCTATGGGTTGGTGGTGGCTTCGAGTCCTAGATCTGGAGAGGACGAACATCTCAGCTGCTGATGGAGACGATGCACTCCGACAGTGGCGTAACTCAGTGTGCCGGAGTCGGGCTGGTGGGTTGGGCGCCCTGAGCACTTTTTTAGGGGACTGGAATTGGGCCTGTTGTCTACTTTTAGTTTCTTTAATAGGTCGCAAAGCTCACATCCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

16.04

Weight (kDa)

5.73

Isoelectric Point (pI)

38.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 167
AccB1I GGYRCC 1 cut(s) 362
AccI GTMKAC 1 cut(s) 406
AccII CGCG 1 cut(s) 119
AciI CCGC 3 cut(s) 119, 160, 215
AclWI GGATC 1 cut(s) 67
AcyI GRCGYC 2 cut(s) 164, 363
AfiI CCNNNNNNNGG 3 cut(s) 150, 271, 346
AluBI AGCT 3 cut(s) 157, 293, 437
AluI AGCT 3 cut(s) 157, 293, 437
Alw21I GWGCWC 1 cut(s) 374
Alw26I GTCTC 1 cut(s) 297
AlwI GGATC 1 cut(s) 67
AlwNI CAGNNNCTG 1 cut(s) 296
AoxI GGCC 1 cut(s) 396
ApeKI GCWGC 2 cut(s) 157, 293
AspLEI GCGC 2 cut(s) 235, 365
AspS9I GGNCC 1 cut(s) 396
AsuHPI GGTGA 1 cut(s) 101
BanI GGYRCC 1 cut(s) 362
Bbv12I GWGCWC 1 cut(s) 374
BbvI GCAGC 2 cut(s) 144, 280
BccI CCATC 4 cut(s) 17, 80, 202, 293
BcoDI GTCTC 1 cut(s) 297
BfaI CTAG 1 cut(s) 266
BfoI RGCGCY 2 cut(s) 236, 366
BglII AGATCT 1 cut(s) 268
BisI GCNGC 2 cut(s) 158, 294
BlsI GCNGC 2 cut(s) 159, 295
BmgT120I GGNCC 1 cut(s) 396
BmiI GGNNCC 2 cut(s) 142, 364
BmsI GCATC 1 cut(s) 298
BpmI CTGGAG 1 cut(s) 293
Bpu10I CCTNAGC 1 cut(s) 368
BsaBI GATNNNNATC 1 cut(s) 90
BsaHI GRCGYC 2 cut(s) 164, 363
Bsc4I CCNNNNNNNGG 3 cut(s) 150, 271, 346
Bse1I ACTGG 2 cut(s) 168, 392
Bse8I GATNNNNATC 1 cut(s) 90
BseGI GGATG 2 cut(s) 28, 441
BseJI GATNNNNATC 1 cut(s) 90
BseLI CCNNNNNNNGG 3 cut(s) 150, 271, 346
BseMII CTCAG 3 cut(s) 303, 345, 359
BseNI ACTGG 2 cut(s) 168, 392
BseXI GCAGC 2 cut(s) 144, 280
BseYI CCCAGC 1 cut(s) 184
Bsh1236I CGCG 1 cut(s) 119
Bsh1285I CGRYCG 1 cut(s) 219
BshFI GGCC 1 cut(s) 398
BshNI GGYRCC 1 cut(s) 362
BsiEI CGRYCG 1 cut(s) 219
BsiHKAI GWGCWC 1 cut(s) 374
BsiSI CCGG 1 cut(s) 340
BslFI GGGAC 1 cut(s) 398
BslI CCNNNNNNNGG 3 cut(s) 150, 271, 346
BsmAI GTCTC 1 cut(s) 297
BsmBI CGTCTC 1 cut(s) 297
BsmFI GGGAC 1 cut(s) 398
BsnI GGCC 1 cut(s) 398
Bsp1286I GDGCHC 1 cut(s) 374
Bsp143I GATC 5 cut(s) 59, 91, 192, 227, 268
BspACI CCGC 3 cut(s) 119, 160, 215
BspANI GGCC 1 cut(s) 398
BspCNI CTCAG 3 cut(s) 302, 344, 360
BspFNI CGCG 1 cut(s) 119
BspLI GGNNCC 2 cut(s) 142, 364
BspPI GGATC 1 cut(s) 67
BspT107I GGYRCC 1 cut(s) 362
BsrI ACTGG 2 cut(s) 168, 392
BssMI GATC 5 cut(s) 59, 91, 192, 227, 268
BssNI GRCGYC 2 cut(s) 164, 363
Bst4CI ACNGT 1 cut(s) 321
BstACI GRCGYC 2 cut(s) 164, 363
BstDEI CTNAG 3 cut(s) 289, 331, 368
BstF5I GGATG 2 cut(s) 28, 441
BstFNI CGCG 1 cut(s) 119
BstH2I RGCGCY 2 cut(s) 236, 366
BstHHI GCGC 2 cut(s) 235, 365
BstKTI GATC 5 cut(s) 62, 94, 195, 230, 271
BstMAI GTCTC 1 cut(s) 297
BstMBI GATC 5 cut(s) 59, 91, 192, 227, 268
BstMCI CGRYCG 1 cut(s) 219
BstMWI GCNNNNNNNGC 2 cut(s) 116, 369
BstUI CGCG 1 cut(s) 119
BstV1I GCAGC 2 cut(s) 144, 280
BstX2I RGATCY 2 cut(s) 59, 268
BstXI CCANNNNNNTGG 1 cut(s) 175
BstYI RGATCY 2 cut(s) 59, 268
BsuRI GGCC 1 cut(s) 398
BtsCI GGATG 2 cut(s) 28, 441
BtsIMutI CAGTG 3 cut(s) 175, 326, 339
CaiI CAGNNNCTG 1 cut(s) 296
CfoI GCGC 2 cut(s) 235, 365
Cfr13I GGNCC 1 cut(s) 396
CviAII CATG 1 cut(s) 28
CviJI RGCY 7 cut(s) 157, 184, 256, 293, 350, 398, 437
CviKI_1 RGCY 7 cut(s) 157, 184, 256, 293, 350, 398, 437
DdeI CTNAG 3 cut(s) 289, 331, 368
DinI GGCGCC 1 cut(s) 364
DpnI GATC 5 cut(s) 61, 93, 194, 229, 270
DpnII GATC 5 cut(s) 59, 91, 192, 227, 268
EgeI GGCGCC 1 cut(s) 364
EheI GGCGCC 1 cut(s) 364
Esp3I CGTCTC 1 cut(s) 297
FaeI CATG 1 cut(s) 31
FaiI YATR 2 cut(s) 29, 242
FaqI GGGAC 1 cut(s) 398
FatI CATG 1 cut(s) 27
FblI GTMKAC 1 cut(s) 406
Fnu4HI GCNGC 2 cut(s) 158, 294
FokI GGATG 2 cut(s) 35, 428
Fsp4HI GCNGC 2 cut(s) 158, 294
FspBI CTAG 1 cut(s) 266
GlaI GCGC 2 cut(s) 234, 364
GluI GCNGC 2 cut(s) 158, 294
GsaI CCCAGC 1 cut(s) 188
GsuI CTGGAG 1 cut(s) 293
HaeII RGCGCY 2 cut(s) 236, 366
HaeIII GGCC 1 cut(s) 398
HapII CCGG 1 cut(s) 340
HhaI GCGC 2 cut(s) 235, 365
Hin1I GRCGYC 2 cut(s) 164, 363
Hin1II CATG 1 cut(s) 31
Hin6I GCGC 2 cut(s) 233, 363
HinP1I GCGC 2 cut(s) 233, 363
HinfI GANTC 2 cut(s) 261, 343
HpaII CCGG 1 cut(s) 340
HphI GGTGA 1 cut(s) 101
Hpy166II GTNNAC 1 cut(s) 407
Hpy188I TCNGA 3 cut(s) 51, 317, 449
Hpy188III TCNNGA 1 cut(s) 272
Hpy8I GTNNAC 1 cut(s) 407
HpyAV CCTTC 1 cut(s) 116
HpyCH4III ACNGT 1 cut(s) 321
HpyCH4IV ACGT 1 cut(s) 164
HpyCH4V TGCA 1 cut(s) 311
HpyF10VI GCNNNNNNNGC 2 cut(s) 116, 369
HpyF3I CTNAG 3 cut(s) 289, 331, 368
HpySE526I ACGT 1 cut(s) 164
Hsp92I GRCGYC 2 cut(s) 164, 363
Hsp92II CATG 1 cut(s) 31
HspAI GCGC 2 cut(s) 233, 363
KasI GGCGCC 1 cut(s) 362
Kzo9I GATC 5 cut(s) 59, 91, 192, 227, 268
Lsp1109I GCAGC 2 cut(s) 144, 280
LweI GCATC 1 cut(s) 298
MaeI CTAG 1 cut(s) 266
MaeII ACGT 1 cut(s) 164
MaeIII GTNAC 2 cut(s) 220, 326
MalI GATC 5 cut(s) 61, 93, 194, 229, 270
MboI GATC 5 cut(s) 59, 91, 192, 227, 268
MboII GAAGA 1 cut(s) 4
MflI RGATCY 2 cut(s) 59, 268
MhlI GDGCHC 1 cut(s) 374
MluCI AATT 1 cut(s) 391
Mly113I GGCGCC 1 cut(s) 363
MlyI GAGTC 2 cut(s) 270, 352
MmeI TCCRAC 1 cut(s) 340
MnlI CCTC 1 cut(s) 270
MseI TTAA 1 cut(s) 422
MspA1I CMGCKG 1 cut(s) 293
MspI CCGG 1 cut(s) 340
MvnI CGCG 1 cut(s) 119
MwoI GCNNNNNNNGC 2 cut(s) 116, 369
NarI GGCGCC 1 cut(s) 363
NdeII GATC 5 cut(s) 59, 91, 192, 227, 268
NlaIII CATG 1 cut(s) 31
NlaIV GGNNCC 2 cut(s) 142, 364
PflFI GACNNNGTC 1 cut(s) 34
PkrI GCNGC 2 cut(s) 159, 295
PleI GAGTC 2 cut(s) 269, 351
PluTI GGCGCC 1 cut(s) 366
PpsI GAGTC 2 cut(s) 269, 351
PspFI CCCAGC 1 cut(s) 184
PspN4I GGNNCC 2 cut(s) 142, 364
PspPI GGNCC 1 cut(s) 396
PstNI CAGNNNCTG 1 cut(s) 296
PsuI RGATCY 2 cut(s) 59, 268
PsyI GACNNNGTC 1 cut(s) 34
PvuII CAGCTG 1 cut(s) 293
SaqAI TTAA 1 cut(s) 422
SatI GCNGC 2 cut(s) 158, 294
Sau3AI GATC 5 cut(s) 59, 91, 192, 227, 268
Sau96I GGNCC 1 cut(s) 396
SchI GAGTC 2 cut(s) 270, 352
SduI GDGCHC 1 cut(s) 374
SetI ASST 6 cut(s) 127, 159, 167, 295, 430, 439
SfaNI GCATC 1 cut(s) 298
SfoI GGCGCC 1 cut(s) 364
Sse9I AATT 1 cut(s) 391
SsiI CCGC 3 cut(s) 119, 160, 215
SspDI GGCGCC 1 cut(s) 362
SspMI CTAG 1 cut(s) 266
TaaI ACNGT 1 cut(s) 321
TaiI ACGT 1 cut(s) 167
TaqI TCGA 2 cut(s) 191, 259
TasI AATT 1 cut(s) 391
Tru1I TTAA 1 cut(s) 422
Tru9I TTAA 1 cut(s) 422
TscAI CASTG 3 cut(s) 175, 326, 339
TseI GCWGC 2 cut(s) 157, 293
TspRI CASTG 3 cut(s) 175, 326, 339
Tth111I GACNNNGTC 1 cut(s) 34
XmiI GTMKAC 1 cut(s) 406
XspI CTAG 1 cut(s) 266
ZraI GACGTC 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.