Rorug06G0037900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0001941
Physical Location & Seq
Reverse (-)
4739969 .. 4741974
2006 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0037900.1

Sequence Viewer

Length: 543 bp
ATGGGAACTCCAAGCAAAGATCTTCTGCAATTGGAGCACAACAAGTCCTCAATTTCACCACTGGAATCCACACTACTTGTTTGTAAAAATGAATCCCAGCCTGCCCAAACAAAGAAGCCCATCATTGCTCCTCCTCCCAAAAGCCAGTTGTTGGGAAAAATGAGGAACTTCTTGGGAGTCATGTCAGAAGCTAATGAAAAATTGCAGCTTGATGCGAAGGATAATCCAGAAAAATATGACATCGAAGCGCTCACCGGAGATGAGTCTCAAGTCGTTAGTGTGGAATGTATGTTGGGTGTTGTTGATCTTCAAACTCCTGAGGCTGTGGCTGCAGCAGAAGCTGCAGTTTCTGGTTATCAGCCTGTGATACCTGTGGAGGATAGCAGTAGTGGAGAGGAATCAGATGATAGTAGCAGTGATGATGAAGAAGAAAGTAGCGATGAGGATAAGAAAACATCCTCTCCGGACAAAATTAATTCTTTAAGTGAAGGATTTAATAATAAGCGGCCCAAAAAGCGGCCTAAAATTATTGAGCTTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

180

Amino Acids

19.47

Weight (kDa)

4.51

Isoelectric Point (pI)

76.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NOPCHAP1 PF15370 50 - 179 4.7e-15 NOP protein chaperone 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 151
AccIII TCCGGA 1 cut(s) 463
AciI CCGC 2 cut(s) 505, 517
AfeI AGCGCT 1 cut(s) 249
AfiI CCNNNNNNNGG 2 cut(s) 151, 516
AgsI TTSAA 1 cut(s) 311
AluBI AGCT 4 cut(s) 191, 208, 341, 535
AluI AGCT 4 cut(s) 191, 208, 341, 535
Alw21I GWGCWC 1 cut(s) 39
Alw26I GTCTC 1 cut(s) 270
AlwNI CAGNNNCTG 2 cut(s) 341, 350
Aor13HI TCCGGA 1 cut(s) 463
Aor51HI AGCGCT 1 cut(s) 249
AoxI GGCC 2 cut(s) 506, 518
ApeKI GCWGC 4 cut(s) 205, 329, 332, 341
AseI ATTAAT 1 cut(s) 474
AspLEI GCGC 1 cut(s) 250
AspS9I GGNCC 1 cut(s) 507
AsuHPI GGTGA 2 cut(s) 48, 244
AxyI CCTNAGG 1 cut(s) 318
Bbv12I GWGCWC 1 cut(s) 39
BbvI GCAGC 4 cut(s) 217, 316, 328, 344
BccI CCATC 1 cut(s) 128
BcoDI GTCTC 1 cut(s) 270
BfmI CTRYAG 2 cut(s) 330, 342
BfoI RGCGCY 1 cut(s) 251
BglII AGATCT 1 cut(s) 19
BisI GCNGC 6 cut(s) 206, 330, 333, 342, 506, 518
BlsI GCNGC 6 cut(s) 207, 331, 334, 343, 507, 519
BmgT120I GGNCC 1 cut(s) 507
BmsI GCATC 1 cut(s) 202
BpuEI CTTGAG 1 cut(s) 252
BsaWI WCCGGW 2 cut(s) 254, 463
BsaXI ACNNNNNCTCC 2 cut(s) 445, 475
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 516
Bse1I ACTGG 2 cut(s) 66, 145
Bse21I CCTNAGG 1 cut(s) 318
Bse3DI GCAATG 1 cut(s) 123
BseAI TCCGGA 1 cut(s) 463
BseGI GGATG 1 cut(s) 455
BseLI CCNNNNNNNGG 2 cut(s) 151, 516
BseMI GCAATG 1 cut(s) 123
BseMII CTCAG 1 cut(s) 309
BseNI ACTGG 2 cut(s) 66, 145
BseRI GAGGAG 2 cut(s) 120, 123
BseXI GCAGC 4 cut(s) 217, 316, 328, 344
BseYI CCCAGC 1 cut(s) 96
BshFI GGCC 2 cut(s) 508, 520
BsiHKAI GWGCWC 1 cut(s) 39
BsiSI CCGG 2 cut(s) 255, 464
BslI CCNNNNNNNGG 2 cut(s) 151, 516
BsmAI GTCTC 1 cut(s) 270
BsnI GGCC 2 cut(s) 508, 520
Bsp1286I GDGCHC 1 cut(s) 39
Bsp13I TCCGGA 1 cut(s) 463
Bsp143I GATC 2 cut(s) 19, 304
BspACI CCGC 2 cut(s) 505, 517
BspANI GGCC 2 cut(s) 508, 520
BspCNI CTCAG 1 cut(s) 310
BspEI TCCGGA 1 cut(s) 463
BspMAI CTGCAG 2 cut(s) 334, 346
BsrDI GCAATG 1 cut(s) 123
BsrI ACTGG 2 cut(s) 66, 145
BssMI GATC 2 cut(s) 19, 304
BstAPI GCANNNNNTGC 1 cut(s) 341
BstC8I GCNNGC 1 cut(s) 102
BstDEI CTNAG 1 cut(s) 318
BstF5I GGATG 1 cut(s) 455
BstH2I RGCGCY 1 cut(s) 251
BstHHI GCGC 1 cut(s) 250
BstKTI GATC 2 cut(s) 22, 307
BstMAI GTCTC 1 cut(s) 270
BstMBI GATC 2 cut(s) 19, 304
BstMWI GCNNNNNNNGC 5 cut(s) 34, 329, 338, 341, 514
BstSFI CTRYAG 2 cut(s) 330, 342
BstV1I GCAGC 4 cut(s) 217, 316, 328, 344
BstX2I RGATCY 1 cut(s) 19
BstYI RGATCY 1 cut(s) 19
Bsu36I CCTNAGG 1 cut(s) 318
BsuRI GGCC 2 cut(s) 508, 520
BtgZI GCGATG 1 cut(s) 453
BtsCI GGATG 1 cut(s) 455
BtsI GCAGTG 1 cut(s) 421
BtsIMutI CAGTG 2 cut(s) 59, 421
Cac8I GCNNGC 1 cut(s) 102
CaiI CAGNNNCTG 2 cut(s) 341, 350
CfoI GCGC 1 cut(s) 250
Cfr13I GGNCC 1 cut(s) 507
CspCI CAANNNNNGTGG 2 cut(s) 58, 93
CviAII CATG 1 cut(s) 181
DdeI CTNAG 1 cut(s) 318
DpnI GATC 2 cut(s) 21, 306
DpnII GATC 2 cut(s) 19, 304
Eco47III AGCGCT 1 cut(s) 249
Eco81I CCTNAGG 1 cut(s) 318
FaeI CATG 1 cut(s) 184
FaiI YATR 4 cut(s) 182, 237, 290, 541
FatI CATG 1 cut(s) 180
Fnu4HI GCNGC 6 cut(s) 206, 330, 333, 342, 506, 518
FokI GGATG 1 cut(s) 442
Fsp4HI GCNGC 6 cut(s) 206, 330, 333, 342, 506, 518
GlaI GCGC 1 cut(s) 249
GluI GCNGC 6 cut(s) 206, 330, 333, 342, 506, 518
GsaI CCCAGC 1 cut(s) 100
HaeII RGCGCY 1 cut(s) 251
HaeIII GGCC 2 cut(s) 508, 520
HapII CCGG 2 cut(s) 255, 464
HhaI GCGC 1 cut(s) 250
Hin1II CATG 1 cut(s) 184
Hin6I GCGC 1 cut(s) 248
HinP1I GCGC 1 cut(s) 248
HinfI GANTC 5 cut(s) 65, 92, 177, 263, 398
HpaII CCGG 2 cut(s) 255, 464
HphI GGTGA 2 cut(s) 48, 244
Hpy188I TCNGA 2 cut(s) 187, 403
Hpy188III TCNNGA 3 cut(s) 227, 317, 464
HpyAV CCTTC 2 cut(s) 211, 482
HpyCH4V TGCA 4 cut(s) 28, 205, 332, 344
HpyF10VI GCNNNNNNNGC 5 cut(s) 34, 329, 338, 341, 514
HpyF3I CTNAG 1 cut(s) 318
Hsp92II CATG 1 cut(s) 184
HspAI GCGC 1 cut(s) 248
Kpn2I TCCGGA 1 cut(s) 463
Kzo9I GATC 2 cut(s) 19, 304
LmnI GCTCC 2 cut(s) 34, 133
Lsp1109I GCAGC 4 cut(s) 217, 316, 328, 344
LweI GCATC 1 cut(s) 202
MalI GATC 2 cut(s) 21, 306
MboI GATC 2 cut(s) 19, 304
MboII GAAGA 4 cut(s) 14, 299, 437, 440
MfeI CAATTG 1 cut(s) 29
MflI RGATCY 1 cut(s) 19
MhlI GDGCHC 1 cut(s) 39
MluCI AATT 6 cut(s) 29, 51, 200, 471, 475, 525
MlyI GAGTC 2 cut(s) 186, 272
MnlI CCTC 9 cut(s) 58, 141, 144, 156, 313, 370, 388, 436, 469
MroI TCCGGA 1 cut(s) 463
MseI TTAA 3 cut(s) 474, 482, 495
MspI CCGG 2 cut(s) 255, 464
MunI CAATTG 1 cut(s) 29
MwoI GCNNNNNNNGC 5 cut(s) 34, 329, 338, 341, 514
NdeII GATC 2 cut(s) 19, 304
NlaIII CATG 1 cut(s) 184
PfeI GAWTC 3 cut(s) 65, 92, 398
PflMI CCANNNNNTGG 1 cut(s) 151
PkrI GCNGC 6 cut(s) 207, 331, 334, 343, 507, 519
PleI GAGTC 2 cut(s) 185, 271
PpsI GAGTC 2 cut(s) 185, 271
PshBI ATTAAT 1 cut(s) 474
PspFI CCCAGC 1 cut(s) 96
PspPI GGNCC 1 cut(s) 507
PstI CTGCAG 2 cut(s) 334, 346
PstNI CAGNNNCTG 2 cut(s) 341, 350
PsuI RGATCY 1 cut(s) 19
SaqAI TTAA 3 cut(s) 474, 482, 495
SatI GCNGC 6 cut(s) 206, 330, 333, 342, 506, 518
Sau3AI GATC 2 cut(s) 19, 304
Sau96I GGNCC 1 cut(s) 507
SchI GAGTC 2 cut(s) 186, 272
SduI GDGCHC 1 cut(s) 39
SetI ASST 5 cut(s) 193, 210, 343, 373, 537
SfaNI GCATC 1 cut(s) 202
SfcI CTRYAG 2 cut(s) 330, 342
SmlI CTYRAG 1 cut(s) 267
SmoI CTYRAG 1 cut(s) 267
Sse9I AATT 6 cut(s) 29, 51, 200, 471, 475, 525
SsiI CCGC 2 cut(s) 505, 517
TaqI TCGA 1 cut(s) 243
TasI AATT 6 cut(s) 29, 51, 200, 471, 475, 525
TauI GCSGC 2 cut(s) 508, 520
TfiI GAWTC 3 cut(s) 65, 92, 398
Tru1I TTAA 3 cut(s) 474, 482, 495
Tru9I TTAA 3 cut(s) 474, 482, 495
TscAI CASTG 2 cut(s) 66, 421
TseI GCWGC 4 cut(s) 205, 329, 332, 341
TspDTI ATGAA 4 cut(s) 105, 210, 438, 528
TspRI CASTG 2 cut(s) 66, 421
Van91I CCANNNNNTGG 1 cut(s) 151
VspI ATTAAT 1 cut(s) 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.