Rh3DG294200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0001941
Physical Location & Seq
Reverse (-)
30552288 .. 30554532
2245 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG294200.1

Sequence Viewer

Length: 309 bp
ATGAAGCTGCGCAGGAAGCTGAGCTTTTTGAATGAGCATCTGCCGGAGGATAAGAAGCCGGTAGGCGGCTATTACTGGGAGGAGTGGGATTCGGGTAGATATTACGGCTTTCTCAATGGGTTGCCTCTTCCCGGCAAGGTTGCTGATGTCCCCGGCGTTCTTCGATGCCAAGTTTCTGGTGGGGTTTTCAACAGTGAAGGACTCATAGAGCAGGATGACGTTAATTCAGTCTGGCGATGGTCGTACCACAGGTCAATTGGTGGTGCAGATCTGGCTCTGGATTGGGTTAAGGCTCTTAATTACCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.65

Weight (kDa)

6.07

Isoelectric Point (pI)

46.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 11
AciI CCGC 1 cut(s) 66
AfaI GTAC 1 cut(s) 245
AfiI CCNNNNNNNGG 2 cut(s) 65, 131
AgsI TTSAA 2 cut(s) 31, 190
AluBI AGCT 3 cut(s) 7, 19, 24
AluI AGCT 3 cut(s) 7, 19, 24
ApeKI GCWGC 1 cut(s) 7
AspLEI GCGC 1 cut(s) 12
AsuC2I CCSGG 2 cut(s) 132, 153
BccI CCATC 1 cut(s) 231
BceAI ACGGC 1 cut(s) 121
BcnI CCSGG 2 cut(s) 132, 153
BglII AGATCT 1 cut(s) 268
BisI GCNGC 2 cut(s) 8, 67
BlpI GCTNAGC 1 cut(s) 20
BlsI GCNGC 2 cut(s) 9, 68
Bme1390I CCNGG 2 cut(s) 132, 153
BmrFI CCNGG 2 cut(s) 132, 153
BmrI ACTGGG 1 cut(s) 85
BmsI GCATC 2 cut(s) 46, 155
BmuI ACTGGG 1 cut(s) 85
Bpu1102I GCTNAGC 1 cut(s) 20
BpuMI CCSGG 2 cut(s) 132, 153
BsaJI CCNNGG 1 cut(s) 151
Bsc4I CCNNNNNNNGG 2 cut(s) 65, 131
Bse118I RCCGGY 1 cut(s) 58
Bse1I ACTGG 1 cut(s) 80
BseDI CCNNGG 1 cut(s) 151
BseGI GGATG 1 cut(s) 220
BseLI CCNNNNNNNGG 2 cut(s) 65, 131
BseMII CTCAG 1 cut(s) 11
BseNI ACTGG 1 cut(s) 80
BseRI GAGGAG 1 cut(s) 95
BsgI GTGCAG 1 cut(s) 285
BsiSI CCGG 4 cut(s) 44, 59, 132, 153
BslFI GGGAC 1 cut(s) 134
BslI CCNNNNNNNGG 2 cut(s) 65, 131
BsmFI GGGAC 1 cut(s) 134
Bsp143I GATC 1 cut(s) 268
Bsp1720I GCTNAGC 1 cut(s) 20
BspACI CCGC 1 cut(s) 66
BspCNI CTCAG 1 cut(s) 12
BsrFI RCCGGY 1 cut(s) 58
BsrI ACTGG 1 cut(s) 80
BssAI RCCGGY 1 cut(s) 58
BssECI CCNNGG 1 cut(s) 151
BssMI GATC 1 cut(s) 268
Bst4CI ACNGT 1 cut(s) 194
Bst6I CTCTTC 1 cut(s) 132
BstDEI CTNAG 1 cut(s) 20
BstF5I GGATG 1 cut(s) 220
BstHHI GCGC 1 cut(s) 12
BstKTI GATC 1 cut(s) 271
BstMBI GATC 1 cut(s) 268
BstMWI GCNNNNNNNGC 2 cut(s) 16, 272
BstSCI CCNGG 2 cut(s) 130, 151
BstX2I RGATCY 1 cut(s) 268
BstXI CCANNNNNNTGG 1 cut(s) 176
BstYI RGATCY 1 cut(s) 268
BtgZI GCGATG 1 cut(s) 250
BtsCI GGATG 1 cut(s) 220
BtsIMutI CAGTG 1 cut(s) 199
CfoI GCGC 1 cut(s) 12
Cfr10I RCCGGY 1 cut(s) 58
Csp6I GTAC 1 cut(s) 244
CviJI RGCY 8 cut(s) 7, 19, 24, 58, 69, 108, 275, 293
CviKI_1 RGCY 8 cut(s) 7, 19, 24, 58, 69, 108, 275, 293
CviQI GTAC 1 cut(s) 244
DdeI CTNAG 1 cut(s) 20
DpnI GATC 1 cut(s) 270
DpnII GATC 1 cut(s) 268
Eam1104I CTCTTC 1 cut(s) 132
EarI CTCTTC 1 cut(s) 132
FaiI YATR 1 cut(s) 206
FalI AAGNNNNNCTT 2 cut(s) 8, 40
FaqI GGGAC 1 cut(s) 134
Fnu4HI GCNGC 2 cut(s) 8, 67
FokI GGATG 1 cut(s) 227
Fsp4HI GCNGC 2 cut(s) 8, 67
FspI TGCGCA 1 cut(s) 11
GlaI GCGC 1 cut(s) 11
GluI GCNGC 2 cut(s) 8, 67
HapII CCGG 4 cut(s) 44, 59, 132, 153
HhaI GCGC 1 cut(s) 12
Hin6I GCGC 1 cut(s) 10
HinP1I GCGC 1 cut(s) 10
HinfI GANTC 2 cut(s) 89, 201
HpaII CCGG 4 cut(s) 44, 59, 132, 153
Hpy188III TCNNGA 1 cut(s) 278
HpyAV CCTTC 1 cut(s) 191
HpyCH4III ACNGT 1 cut(s) 194
HpyCH4IV ACGT 1 cut(s) 219
HpyCH4V TGCA 1 cut(s) 266
HpyF10VI GCNNNNNNNGC 2 cut(s) 16, 272
HpyF3I CTNAG 1 cut(s) 20
HpySE526I ACGT 1 cut(s) 219
HspAI GCGC 1 cut(s) 10
Kzo9I GATC 1 cut(s) 268
LweI GCATC 2 cut(s) 46, 155
MaeII ACGT 1 cut(s) 219
MalI GATC 1 cut(s) 270
MboI GATC 1 cut(s) 268
MboII GAAGA 2 cut(s) 119, 152
MfeI CAATTG 1 cut(s) 255
MflI RGATCY 1 cut(s) 268
MluCI AATT 3 cut(s) 223, 255, 298
MlyI GAGTC 1 cut(s) 195
MnlI CCTC 3 cut(s) 40, 73, 135
MseI TTAA 3 cut(s) 222, 288, 297
MspI CCGG 4 cut(s) 44, 59, 132, 153
MspR9I CCNGG 2 cut(s) 132, 153
MunI CAATTG 1 cut(s) 255
MwoI GCNNNNNNNGC 2 cut(s) 16, 272
NciI CCSGG 2 cut(s) 132, 153
NdeII GATC 1 cut(s) 268
NsbI TGCGCA 1 cut(s) 11
PfeI GAWTC 1 cut(s) 89
PkrI GCNGC 2 cut(s) 9, 68
PleI GAGTC 1 cut(s) 195
PpsI GAGTC 1 cut(s) 195
PsuI RGATCY 1 cut(s) 268
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
SaqAI TTAA 3 cut(s) 222, 288, 297
SatI GCNGC 2 cut(s) 8, 67
Sau3AI GATC 1 cut(s) 268
SchI GAGTC 1 cut(s) 195
ScrFI CCNGG 2 cut(s) 132, 153
SetI ASST 7 cut(s) 9, 21, 26, 141, 222, 254, 306
SfaNI GCATC 2 cut(s) 46, 155
Sse9I AATT 3 cut(s) 223, 255, 298
SsiI CCGC 1 cut(s) 66
StyD4I CCNGG 2 cut(s) 130, 151
TaaI ACNGT 1 cut(s) 194
TaiI ACGT 1 cut(s) 222
TaqI TCGA 1 cut(s) 163
TasI AATT 3 cut(s) 223, 255, 298
TauI GCSGC 1 cut(s) 69
TfiI GAWTC 1 cut(s) 89
Tru1I TTAA 3 cut(s) 222, 288, 297
Tru9I TTAA 3 cut(s) 222, 288, 297
TscAI CASTG 1 cut(s) 199
TseI GCWGC 1 cut(s) 7
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 199
XcmI CCANNNNNNNNNTGG 2 cut(s) 176, 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.