Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001941

Physical Location & Seq

Genomic Coordinates Reverse (-)

36294248 .. 36294664

Gene Structure 417 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024480

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGAGAAAATCTCAGGTTTTTGCCTCTTCATCTTCGTCTTCCTTGTCTTCAGAGGCAGTGCGTCTATTGAGCAGAGTTTGGGCGTTGATGGGGCTGTGTCAGTGGGCCAAGTTGCTATTGGTATACCATCGGAGGGATGCAGTGATTACTGGGAGAAGTGGGATCCGAGAAGCAGTCTCGGCGATCTCAGGGTTTTGGGGCGAGCTCTCGCTGCAGATACGGTGGTGATCGGGGCTTGGTCGGATCTTTGGTTGACGGATAAGGGCGGAGGGGATTTGGTTTCTTCTACAGCTGGTGGCTTTGGATCTTCATCTGCGTGGGACTACGACGCTAGGCTGAAGAACGTCGGATTTTGGTGCGAGGTGCGGGGATGGGGTTCTGGTGGTGATGGCCGAGCGATGGGGTCGGTTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

139

Amino Acids

14.53

Weight (kDa)

4.54

Isoelectric Point (pI)

28.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001941)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0242461
rosa_laevigata	RLG00000000198 RLG00000001395 RLG00000002534 RLG00000004260 RLG00000004509 RLG00000005005 RLG00000007730 RLG00000007778 RLG00000008977 RLG00000012806 RLG00000014111 RLG00000015644 RLG00000015853 RLG00000023399 RLG00000024480 RLG00000025907 RLG00000027839 RLG00000037045
rosa_multiflora	Rmu_sc0002184.1_g000017 Rmu_ssc0000281.1_g000033
rosa_roxburghii	Rroxscaffold_4G00320490 Rroxscaffold_5G00343060
rosa_rugosa	Rorug05G0168200 Rorug06G0037900 Rorug06G0190800
rosa_samantha	Rh2CG548800 Rh3CG231400 Rh3DG179100 Rh3DG231300 Rh3DG294200 Rh4DG182500 Rh4DG266400 Rh5AG258800 Rh5AG498800 Rh5CG543300 Rh5DG558400 Rh6BG482600 Rh6CG221300 Rh6CG487900 Rh6DG489100 Rh7AG193500 Rh7AG247400 Rh7BG033900 Rh7DG233300 Rh7DG253600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	124
AciI	CCGC	2 cut(s)	267, 367
AclWI	GGATC	4 cut(s)	158, 171, 252, 313
AcoI	YGGCCR	1 cut(s)	391
AcuI	CTGAAG	2 cut(s)	34, 359
AfiI	CCNNNNNNNGG	2 cut(s)	134, 400
AluBI	AGCT	2 cut(s)	206, 293
AluI	AGCT	2 cut(s)	206, 293
Alw21I	GWGCWC	1 cut(s)	208
Alw26I	GTCTC	1 cut(s)	182
AlwI	GGATC	4 cut(s)	158, 171, 252, 313
AoxI	GGCC	2 cut(s)	106, 391
ApeKI	GCWGC	1 cut(s)	212
AspS9I	GGNCC	1 cut(s)	106
AsuHPI	GGTGA	2 cut(s)	238, 398
BaeI	ACNNNNGTAYC	2 cut(s)	210, 243
BamHI	GGATCC	1 cut(s)	163
BanII	GRGCYC	1 cut(s)	208
BbsI	GAAGAC	2 cut(s)	31, 40
Bbv12I	GWGCWC	1 cut(s)	208
BbvI	GCAGC	1 cut(s)	199
BccI	CCATC	5 cut(s)	83, 136, 366, 383, 394
BcoDI	GTCTC	1 cut(s)	182
BfaI	CTAG	1 cut(s)	333
BfmI	CTRYAG	2 cut(s)	213, 288
BisI	GCNGC	1 cut(s)	213
BlsI	GCNGC	1 cut(s)	214
BmgT120I	GGNCC	1 cut(s)	106
BmiI	GGNNCC	1 cut(s)	165
BmrI	ACTGGG	1 cut(s)	160
BmsI	GCATC	1 cut(s)	128
BmuI	ACTGGG	1 cut(s)	160
BpiI	GAAGAC	2 cut(s)	31, 40
BplI	GAGNNNNNCTC	1 cut(s)	28
BsaBI	GATNNNNATC	1 cut(s)	310
Bsc4I	CCNNNNNNNGG	2 cut(s)	134, 400
Bse1I	ACTGG	1 cut(s)	155
Bse8I	GATNNNNATC	1 cut(s)	310
BseGI	GGATG	2 cut(s)	143, 377
BseJI	GATNNNNATC	1 cut(s)	310
BseLI	CCNNNNNNNGG	2 cut(s)	134, 400
BseMII	CTCAG	2 cut(s)	27, 202
BseNI	ACTGG	1 cut(s)	155
BseXI	GCAGC	1 cut(s)	199
BshFI	GGCC	2 cut(s)	108, 393
BsiHKAI	GWGCWC	1 cut(s)	208
BslFI	GGGAC	1 cut(s)	335
BslI	CCNNNNNNNGG	2 cut(s)	134, 400
BsmAI	GTCTC	1 cut(s)	182
BsmFI	GGGAC	1 cut(s)	335
BsnI	GGCC	2 cut(s)	108, 393
Bsp1286I	GDGCHC	1 cut(s)	208
Bsp143I	GATC	5 cut(s)	163, 184, 228, 244, 305
BspACI	CCGC	2 cut(s)	267, 367
BspANI	GGCC	2 cut(s)	108, 393
BspCNI	CTCAG	2 cut(s)	26, 201
BspLI	GGNNCC	1 cut(s)	165
BspMAI	CTGCAG	1 cut(s)	217
BspPI	GGATC	4 cut(s)	158, 171, 252, 313
BsrI	ACTGG	1 cut(s)	155
BssMI	GATC	5 cut(s)	163, 184, 228, 244, 305
BssNAI	GTATAC	1 cut(s)	125
Bst1107I	GTATAC	1 cut(s)	125
Bst4CI	ACNGT	1 cut(s)	223
Bst6I	CTCTTC	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	204
BstDEI	CTNAG	2 cut(s)	13, 188
BstF5I	GGATG	2 cut(s)	143, 377
BstKTI	GATC	5 cut(s)	166, 187, 231, 247, 308
BstMAI	GTCTC	1 cut(s)	182
BstMBI	GATC	5 cut(s)	163, 184, 228, 244, 305
BstMWI	GCNNNNNNNGC	2 cut(s)	180, 212
BstSFI	CTRYAG	2 cut(s)	213, 288
BstV1I	GCAGC	1 cut(s)	199
BstV2I	GAAGAC	2 cut(s)	31, 40
BstX2I	RGATCY	3 cut(s)	163, 244, 305
BstYI	RGATCY	3 cut(s)	163, 244, 305
BstZ17I	GTATAC	1 cut(s)	125
BsuRI	GGCC	2 cut(s)	108, 393
BtgZI	GCGATG	1 cut(s)	413
BtsCI	GGATG	2 cut(s)	143, 377
BtsI	GCAGTG	2 cut(s)	64, 148
BtsIMutI	CAGTG	3 cut(s)	64, 108, 148
Cac8I	GCNNGC	1 cut(s)	204
Cfr13I	GGNCC	1 cut(s)	106
CseI	GACGC	2 cut(s)	51, 338
CviJI	RGCY	8 cut(s)	95, 108, 206, 236, 293, 300, 337, 393
CviKI_1	RGCY	8 cut(s)	95, 108, 206, 236, 293, 300, 337, 393
DdeI	CTNAG	2 cut(s)	13, 188
DpnI	GATC	5 cut(s)	165, 186, 230, 246, 307
DpnII	GATC	5 cut(s)	163, 184, 228, 244, 305
EaeI	YGGCCR	1 cut(s)	391
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
EciI	GGCGGA	1 cut(s)	282
Ecl136II	GAGCTC	1 cut(s)	206
Eco24I	GRGCYC	1 cut(s)	208
Eco53kI	GAGCTC	1 cut(s)	206
Eco57I	CTGAAG	2 cut(s)	34, 359
EcoICRI	GAGCTC	1 cut(s)	206
EcoT38I	GRGCYC	1 cut(s)	208
FaiI	YATR	1 cut(s)	125
FaqI	GGGAC	1 cut(s)	335
FauI	CCCGC	1 cut(s)	360
FblI	GTMKAC	1 cut(s)	124
Fnu4HI	GCNGC	1 cut(s)	213
FokI	GGATG	2 cut(s)	150, 384
FriOI	GRGCYC	1 cut(s)	208
Fsp4HI	GCNGC	1 cut(s)	213
FspBI	CTAG	1 cut(s)	333
GluI	GCNGC	1 cut(s)	213
HaeIII	GGCC	2 cut(s)	108, 393
HgaI	GACGC	2 cut(s)	51, 338
HincII	GTYRAC	1 cut(s)	255
HindII	GTYRAC	1 cut(s)	255
HphI	GGTGA	2 cut(s)	238, 398
Hpy166II	GTNNAC	2 cut(s)	125, 255
Hpy188I	TCNGA	5 cut(s)	53, 133, 168, 244, 350
Hpy8I	GTNNAC	2 cut(s)	125, 255
Hpy99I	CGWCG	2 cut(s)	332, 350
HpyCH4III	ACNGT	1 cut(s)	223
HpyCH4IV	ACGT	1 cut(s)	345
HpyCH4V	TGCA	2 cut(s)	141, 215
HpyF10VI	GCNNNNNNNGC	2 cut(s)	180, 212
HpyF3I	CTNAG	2 cut(s)	13, 188
HpySE526I	ACGT	1 cut(s)	345
Kzo9I	GATC	5 cut(s)	163, 184, 228, 244, 305
LpnPI	CCDG	4 cut(s)	136, 175, 279, 366
Lsp1109I	GCAGC	1 cut(s)	199
LweI	GCATC	1 cut(s)	128
MaeI	CTAG	1 cut(s)	333
MaeII	ACGT	1 cut(s)	345
MalI	GATC	5 cut(s)	165, 186, 230, 246, 307
MboI	GATC	5 cut(s)	163, 184, 228, 244, 305
MboII	GAAGA	7 cut(s)	19, 25, 31, 40, 276, 300, 352
MflI	RGATCY	3 cut(s)	163, 244, 305
MhlI	GDGCHC	1 cut(s)	208
MmeI	TCCRAC	2 cut(s)	222, 328
MnlI	CCTC	5 cut(s)	35, 47, 127, 263, 355
MslI	CAYNNNNRTG	1 cut(s)	316
MspA1I	CMGCKG	1 cut(s)	293
MwoI	GCNNNNNNNGC	2 cut(s)	180, 212
NdeII	GATC	5 cut(s)	163, 184, 228, 244, 305
NlaIV	GGNNCC	1 cut(s)	165
NmeAIII	GCCGAG	1 cut(s)	159
PkrI	GCNGC	1 cut(s)	214
Psp124BI	GAGCTC	1 cut(s)	208
PspN4I	GGNNCC	1 cut(s)	165
PspPI	GGNCC	1 cut(s)	106
PstI	CTGCAG	1 cut(s)	217
PsuI	RGATCY	3 cut(s)	163, 244, 305
PvuII	CAGCTG	1 cut(s)	293
RseI	CAYNNNNRTG	1 cut(s)	316
SacI	GAGCTC	1 cut(s)	208
SatI	GCNGC	1 cut(s)	213
Sau3AI	GATC	5 cut(s)	163, 184, 228, 244, 305
Sau96I	GGNCC	1 cut(s)	106
SduI	GDGCHC	1 cut(s)	208
SetI	ASST	5 cut(s)	19, 208, 295, 348, 366
SfaNI	GCATC	1 cut(s)	128
SfcI	CTRYAG	2 cut(s)	213, 288
SmiMI	CAYNNNNRTG	1 cut(s)	316
SsiI	CCGC	2 cut(s)	267, 367
SspMI	CTAG	1 cut(s)	333
SstI	GAGCTC	1 cut(s)	208
TaaI	ACNGT	1 cut(s)	223
TaiI	ACGT	1 cut(s)	348
TscAI	CASTG	3 cut(s)	64, 108, 148
TseI	GCWGC	1 cut(s)	212
TspDTI	ATGAA	2 cut(s)	19, 300
TspGWI	ACGGA	1 cut(s)	272
TspRI	CASTG	3 cut(s)	64, 108, 148
XcmI	CCANNNNNNNNNTGG	1 cut(s)	116
XmiI	GTMKAC	1 cut(s)	124
XspI	CTAG	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.