RLG00000023399

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0001941
Physical Location & Seq
Reverse (-)
23091785 .. 23093322
1538 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023399

Sequence Viewer

Length: 522 bp
ATGGAGAAAATTCCAGGCTTTTGCCTCTTCATCTTCGTCTTCGTTGTCTTCGGAGGCAGTGAGTTTGTTGAGCGGAGTTTGGGCACTGCTGGGGCTGTGTCGGTGGGCCAATTTACTGTTGGTACACCATCGGAGGTATGCGGTGATTACTGGAAGGAGTGGGATCCGGGATGCAGCCCCAATGATCTCAGGGGCGGTGGGAACTCGGTTTCTTCTTCTGCCGGTGGGTTTGGATCTTCATCTACTTTGGAGAGGATCGGTGGTATCTCTTTACAATTCCAAGACTACGACGCTATCGGGAATGGACTGAACGTCGGATTCTGGTGTGAGGTGAGGGGATTGGGTTCTGGTAGCGATGGTCGAGAGGTGGTGTCGGCTTGTTGGGACTTCGATGGCGGTGATTTGTTCGTTGGCAATGGCCGTAGCAGTTTGGCAGTCTCCTCTATTGCAGGTCATAGGGACACGTCCGACAGCGCTGCTGTCCAGATAACATTTGCAATGGCTCATACATTTCATGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

17.99

Weight (kDa)

4.47

Isoelectric Point (pI)

32.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 440
AccBSI CCGCTC 1 cut(s) 73
AciI CCGC 4 cut(s) 73, 141, 195, 396
AclWI GGATC 4 cut(s) 158, 171, 241, 263
AcoI YGGCCR 1 cut(s) 418
AcsI RAATTY 1 cut(s) 9
AfaI GTAC 1 cut(s) 124
AfeI AGCGCT 1 cut(s) 475
AflIII ACRYGT 1 cut(s) 462
AhdI GACNNNNNGTC 1 cut(s) 311
AjiI CACGTC 1 cut(s) 465
AjnI CCWGG 1 cut(s) 13
Alw26I GTCTC 1 cut(s) 442
AlwI GGATC 4 cut(s) 158, 171, 241, 263
Aor51HI AGCGCT 1 cut(s) 475
AoxI GGCC 2 cut(s) 106, 418
ApeKI GCWGC 2 cut(s) 174, 476
ApoI RAATTY 1 cut(s) 9
AspLEI GCGC 1 cut(s) 476
AspS9I GGNCC 1 cut(s) 106
AsuC2I CCSGG 1 cut(s) 168
AsuHPI GGTGA 3 cut(s) 155, 343, 410
BaeGI GKGCMC 1 cut(s) 86
BamHI GGATCC 1 cut(s) 163
BbsI GAAGAC 2 cut(s) 31, 40
BbvI GCAGC 2 cut(s) 186, 463
BccI CCATC 3 cut(s) 136, 350, 386
BceAI ACGGC 1 cut(s) 405
BcgI CGANNNNNNTGC 2 cut(s) 458, 492
BciT130I CCWGG 1 cut(s) 15
BcnI CCSGG 1 cut(s) 168
BcoDI GTCTC 1 cut(s) 442
BfoI RGCGCY 1 cut(s) 477
BfuAI ACCTGC 1 cut(s) 440
BisI GCNGC 2 cut(s) 175, 477
BlsI GCNGC 2 cut(s) 176, 478
Bme1390I CCNGG 2 cut(s) 15, 168
BmeRI GACNNNNNGTC 1 cut(s) 311
BmgBI CACGTC 1 cut(s) 465
BmgT120I GGNCC 1 cut(s) 106
BmiI GGNNCC 1 cut(s) 165
BmrFI CCNGG 2 cut(s) 15, 168
BmsI GCATC 1 cut(s) 161
BpiI GAAGAC 2 cut(s) 31, 40
BpuMI CCSGG 1 cut(s) 168
BsaBI GATNNNNATC 1 cut(s) 238
Bse118I RCCGGY 1 cut(s) 221
Bse1I ACTGG 1 cut(s) 155
Bse3DI GCAATG 2 cut(s) 421, 504
Bse8I GATNNNNATC 1 cut(s) 238
BseBI CCWGG 1 cut(s) 15
BseGI GGATG 1 cut(s) 176
BseJI GATNNNNATC 1 cut(s) 238
BseMI GCAATG 2 cut(s) 421, 504
BseMII CTCAG 1 cut(s) 202
BseNI ACTGG 1 cut(s) 155
BseRI GAGGAG 1 cut(s) 430
BseSI GKGCMC 1 cut(s) 86
BseXI GCAGC 2 cut(s) 186, 463
BseYI CCCAGC 1 cut(s) 89
BshFI GGCC 2 cut(s) 108, 420
BsiSI CCGG 2 cut(s) 167, 222
BslFI GGGAC 2 cut(s) 398, 473
BsmAI GTCTC 1 cut(s) 442
BsmFI GGGAC 2 cut(s) 398, 473
BsnI GGCC 2 cut(s) 108, 420
Bsp1286I GDGCHC 1 cut(s) 86
Bsp143I GATC 4 cut(s) 163, 184, 233, 255
BspACI CCGC 4 cut(s) 73, 141, 195, 396
BspANI GGCC 2 cut(s) 108, 420
BspCNI CTCAG 1 cut(s) 201
BspLI GGNNCC 1 cut(s) 165
BspMI ACCTGC 1 cut(s) 440
BspPI GGATC 4 cut(s) 158, 171, 241, 263
BsrBI CCGCTC 1 cut(s) 73
BsrDI GCAATG 2 cut(s) 421, 504
BsrFI RCCGGY 1 cut(s) 221
BsrI ACTGG 1 cut(s) 155
BssAI RCCGGY 1 cut(s) 221
BssMI GATC 4 cut(s) 163, 184, 233, 255
Bst2UI CCWGG 1 cut(s) 15
Bst4CI ACNGT 1 cut(s) 118
Bst6I CTCTTC 1 cut(s) 32
BstDEI CTNAG 1 cut(s) 188
BstF5I GGATG 1 cut(s) 176
BstH2I RGCGCY 1 cut(s) 477
BstHHI GCGC 1 cut(s) 476
BstKTI GATC 4 cut(s) 166, 187, 236, 258
BstMAI GTCTC 1 cut(s) 442
BstMBI GATC 4 cut(s) 163, 184, 233, 255
BstNI CCWGG 1 cut(s) 15
BstSCI CCNGG 2 cut(s) 13, 166
BstSLI GKGCMC 1 cut(s) 86
BstV1I GCAGC 2 cut(s) 186, 463
BstV2I GAAGAC 2 cut(s) 31, 40
BstX2I RGATCY 2 cut(s) 163, 233
BstYI RGATCY 2 cut(s) 163, 233
BsuRI GGCC 2 cut(s) 108, 420
BtgZI GCGATG 1 cut(s) 369
BtrI CACGTC 1 cut(s) 465
BtsCI GGATG 1 cut(s) 176
BtsI GCAGTG 2 cut(s) 64, 84
BtsIMutI CAGTG 2 cut(s) 64, 84
BveI ACCTGC 1 cut(s) 440
CfoI GCGC 1 cut(s) 476
Cfr10I RCCGGY 1 cut(s) 221
Cfr13I GGNCC 1 cut(s) 106
CseI GACGC 1 cut(s) 299
Csp6I GTAC 1 cut(s) 123
CviAII CATG 1 cut(s) 515
CviJI RGCY 7 cut(s) 18, 95, 108, 177, 377, 420, 503
CviKI_1 RGCY 7 cut(s) 18, 95, 108, 177, 377, 420, 503
CviQI GTAC 1 cut(s) 123
DdeI CTNAG 1 cut(s) 188
DpnI GATC 4 cut(s) 165, 186, 235, 257
DpnII GATC 4 cut(s) 163, 184, 233, 255
DriI GACNNNNNGTC 1 cut(s) 311
EaeI YGGCCR 1 cut(s) 418
Eam1104I CTCTTC 1 cut(s) 32
Eam1105I GACNNNNNGTC 1 cut(s) 311
EarI CTCTTC 1 cut(s) 32
Eco47III AGCGCT 1 cut(s) 475
EcoRII CCWGG 1 cut(s) 13
EcoT22I ATGCAT 1 cut(s) 520
FaeI CATG 1 cut(s) 518
FaiI YATR 5 cut(s) 139, 456, 507, 516, 520
FaqI GGGAC 2 cut(s) 398, 473
FatI CATG 1 cut(s) 514
Fnu4HI GCNGC 2 cut(s) 175, 477
FokI GGATG 1 cut(s) 183
Fsp4HI GCNGC 2 cut(s) 175, 477
GlaI GCGC 1 cut(s) 475
GluI GCNGC 2 cut(s) 175, 477
GsaI CCCAGC 1 cut(s) 93
HaeII RGCGCY 1 cut(s) 477
HaeIII GGCC 2 cut(s) 108, 420
HapII CCGG 2 cut(s) 167, 222
HgaI GACGC 1 cut(s) 299
HhaI GCGC 1 cut(s) 476
Hin1II CATG 1 cut(s) 518
Hin6I GCGC 1 cut(s) 474
HinP1I GCGC 1 cut(s) 474
HinfI GANTC 1 cut(s) 318
HpaII CCGG 2 cut(s) 167, 222
HphI GGTGA 3 cut(s) 155, 343, 410
Hpy166II GTNNAC 1 cut(s) 125
Hpy188I TCNGA 4 cut(s) 53, 133, 317, 469
Hpy188III TCNNGA 3 cut(s) 298, 362, 484
Hpy8I GTNNAC 1 cut(s) 125
Hpy99I CGWCG 2 cut(s) 293, 317
HpyAV CCTTC 1 cut(s) 148
HpyCH4III ACNGT 1 cut(s) 118
HpyCH4IV ACGT 2 cut(s) 312, 464
HpyCH4V TGCA 4 cut(s) 174, 449, 497, 518
HpyF3I CTNAG 1 cut(s) 188
HpySE526I ACGT 2 cut(s) 312, 464
Hsp92II CATG 1 cut(s) 518
HspAI GCGC 1 cut(s) 474
Kzo9I GATC 4 cut(s) 163, 184, 233, 255
Lsp1109I GCAGC 2 cut(s) 186, 463
LweI GCATC 1 cut(s) 161
MaeII ACGT 2 cut(s) 312, 464
MalI GATC 4 cut(s) 165, 186, 235, 257
MbiI CCGCTC 1 cut(s) 73
MboI GATC 4 cut(s) 163, 184, 233, 255
MboII GAAGA 7 cut(s) 19, 25, 31, 40, 204, 207, 228
MflI RGATCY 2 cut(s) 163, 233
MhlI GDGCHC 1 cut(s) 86
MluCI AATT 3 cut(s) 9, 110, 275
MmeI TCCRAC 2 cut(s) 295, 492
MnlI CCTC 8 cut(s) 35, 47, 127, 246, 322, 327, 358, 451
Mph1103I ATGCAT 1 cut(s) 520
MspI CCGG 2 cut(s) 167, 222
MspR9I CCNGG 2 cut(s) 15, 168
MvaI CCWGG 1 cut(s) 15
NciI CCSGG 1 cut(s) 168
NdeII GATC 4 cut(s) 163, 184, 233, 255
NlaIII CATG 1 cut(s) 518
NlaIV GGNNCC 1 cut(s) 165
NsiI ATGCAT 1 cut(s) 520
PfeI GAWTC 1 cut(s) 318
PfoI TCCNGGA 1 cut(s) 166
PkrI GCNGC 2 cut(s) 176, 478
Psp6I CCWGG 1 cut(s) 13
PspFI CCCAGC 1 cut(s) 89
PspGI CCWGG 1 cut(s) 13
PspN4I GGNNCC 1 cut(s) 165
PspPI GGNCC 1 cut(s) 106
PsuI RGATCY 2 cut(s) 163, 233
RsaI GTAC 1 cut(s) 124
RsaNI GTAC 1 cut(s) 123
SatI GCNGC 2 cut(s) 175, 477
Sau3AI GATC 4 cut(s) 163, 184, 233, 255
Sau96I GGNCC 1 cut(s) 106
ScrFI CCNGG 2 cut(s) 15, 168
SduI GDGCHC 1 cut(s) 86
SetI ASST 6 cut(s) 138, 315, 333, 369, 454, 467
SfaNI GCATC 1 cut(s) 161
Sse9I AATT 3 cut(s) 9, 110, 275
SsiI CCGC 4 cut(s) 73, 141, 195, 396
StyD4I CCNGG 2 cut(s) 13, 166
TaaI ACNGT 1 cut(s) 118
TaiI ACGT 2 cut(s) 315, 467
TaqI TCGA 2 cut(s) 361, 390
TasI AATT 3 cut(s) 9, 110, 275
TfiI GAWTC 1 cut(s) 318
TscAI CASTG 2 cut(s) 64, 91
TseI GCWGC 2 cut(s) 174, 476
TspDTI ATGAA 3 cut(s) 19, 228, 503
TspRI CASTG 2 cut(s) 64, 91
XapI RAATTY 1 cut(s) 9
XcmI CCANNNNNNNNNTGG 1 cut(s) 116
Zsp2I ATGCAT 1 cut(s) 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.