Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001941

Physical Location & Seq

Genomic Coordinates Reverse (-)

48571829 .. 48573164

Gene Structure 1336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG266400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGTCGGTCCAATTTTCTTTTGGTTCGGGTTCGGTGGTAGGTGGGTTTTGCTGGGAGGAATGTGATCCTGGTAGATGTTATAGTTTTCTCTATGGGTTGCCTCTTCCCGGCGGGGATGCTGATGTGATGGTGATTCGGTGGGGGTGGAAGGGGTCATTCCTCTGGCCGGATTGCGTGGTGTTGTGCCCCACTGGTAGAGATTTGAGTTGTGGTGTTGGTGACCGGTTTTGGGTCCCCGATGCTCTTCGATGCCGAGGTGGTATGGTAGATGACACTCTATCGATTGGTGGCTTGACGGGGATTGGTTGTGTCACCAGCGGCGGGGTCGTTTGGCCAGATGTAGTGGGTGATGGGAGACAATCTAGTGGGCTATGGGCCCAAGTCGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

129

Amino Acids

13.66

Weight (kDa)

4.34

Isoelectric Point (pI)

35.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001941)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0242461
rosa_laevigata	RLG00000000198 RLG00000001395 RLG00000002534 RLG00000004260 RLG00000004509 RLG00000005005 RLG00000007730 RLG00000007778 RLG00000008977 RLG00000012806 RLG00000014111 RLG00000015644 RLG00000015853 RLG00000023399 RLG00000024480 RLG00000025907 RLG00000027839 RLG00000037045
rosa_multiflora	Rmu_sc0002184.1_g000017 Rmu_ssc0000281.1_g000033
rosa_roxburghii	Rroxscaffold_4G00320490 Rroxscaffold_5G00343060
rosa_rugosa	Rorug05G0168200 Rorug06G0037900 Rorug06G0190800
rosa_samantha	Rh2CG548800 Rh3CG231400 Rh3DG179100 Rh3DG231300 Rh3DG294200 Rh4DG182500 Rh4DG266400 Rh5AG258800 Rh5AG498800 Rh5CG543300 Rh5DG558400 Rh6BG482600 Rh6CG221300 Rh6CG487900 Rh6DG489100 Rh7AG193500 Rh7AG247400 Rh7BG033900 Rh7DG233300 Rh7DG253600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	111, 318, 321
AclWI	GGATC	1 cut(s)	59
AcoI	YGGCCR	2 cut(s)	164, 332
AfiI	CCNNNNNNNGG	4 cut(s)	107, 166, 229, 321
AgeI	ACCGGT	1 cut(s)	222
AjnI	CCWGG	1 cut(s)	67
Alw26I	GTCTC	1 cut(s)	349
AlwI	GGATC	1 cut(s)	59
AoxI	GGCC	3 cut(s)	164, 332, 375
ApaI	GGGCCC	1 cut(s)	379
AsiGI	ACCGGT	1 cut(s)	222
AspS9I	GGNCC	4 cut(s)	7, 232, 375, 376
AsuC2I	CCSGG	1 cut(s)	108
AsuHPI	GGTGA	4 cut(s)	142, 230, 304, 359
AvaII	GGWCC	2 cut(s)	7, 232
BaeGI	GKGCMC	2 cut(s)	188, 379
BalI	TGGCCA	1 cut(s)	334
BanII	GRGCYC	1 cut(s)	379
BccI	CCATC	2 cut(s)	121, 344
BciT130I	CCWGG	1 cut(s)	69
BcnI	CCSGG	1 cut(s)	108
BcoDI	GTCTC	1 cut(s)	349
BfaI	CTAG	2 cut(s)	363, 388
BisI	GCNGC	1 cut(s)	319
BlsI	GCNGC	1 cut(s)	320
Bme1390I	CCNGG	2 cut(s)	69, 108
Bme18I	GGWCC	2 cut(s)	7, 232
BmgT120I	GGNCC	4 cut(s)	7, 232, 375, 376
BmiI	GGNNCC	3 cut(s)	233, 234, 377
BmrFI	CCNGG	2 cut(s)	69, 108
BmsI	GCATC	3 cut(s)	106, 229, 239
BpuMI	CCSGG	1 cut(s)	108
Bsa29I	ATCGAT	1 cut(s)	281
BsaJI	CCNNGG	1 cut(s)	253
BsaWI	WCCGGW	1 cut(s)	222
Bsc4I	CCNNNNNNNGG	4 cut(s)	107, 166, 229, 321
Bse118I	RCCGGY	1 cut(s)	222
Bse1I	ACTGG	1 cut(s)	196
BseBI	CCWGG	1 cut(s)	69
BseCI	ATCGAT	1 cut(s)	281
BseDI	CCNNGG	1 cut(s)	253
BseGI	GGATG	1 cut(s)	121
BseLI	CCNNNNNNNGG	4 cut(s)	107, 166, 229, 321
BseNI	ACTGG	1 cut(s)	196
BseSI	GKGCMC	2 cut(s)	188, 379
BseYI	CCCAGC	1 cut(s)	51
BshFI	GGCC	3 cut(s)	166, 334, 377
BshTI	ACCGGT	1 cut(s)	222
BshVI	ATCGAT	1 cut(s)	281
BsiSI	CCGG	3 cut(s)	108, 167, 223
BslFI	GGGAC	1 cut(s)	218
BslI	CCNNNNNNNGG	4 cut(s)	107, 166, 229, 321
BsmAI	GTCTC	1 cut(s)	349
BsmFI	GGGAC	1 cut(s)	218
BsnI	GGCC	3 cut(s)	166, 334, 377
Bsp120I	GGGCCC	1 cut(s)	375
Bsp1286I	GDGCHC	2 cut(s)	188, 379
Bsp143I	GATC	1 cut(s)	64
BspACI	CCGC	3 cut(s)	111, 318, 321
BspANI	GGCC	3 cut(s)	166, 334, 377
BspDI	ATCGAT	1 cut(s)	281
BspLI	GGNNCC	3 cut(s)	233, 234, 377
BspPI	GGATC	1 cut(s)	59
BspQI	GCTCTTC	1 cut(s)	249
BsrFI	RCCGGY	1 cut(s)	222
BsrI	ACTGG	1 cut(s)	196
BssAI	RCCGGY	1 cut(s)	222
BssECI	CCNNGG	1 cut(s)	253
BssMI	GATC	1 cut(s)	64
Bst2UI	CCWGG	1 cut(s)	69
Bst6I	CTCTTC	2 cut(s)	108, 249
BstEII	GGTNACC	1 cut(s)	218
BstF5I	GGATG	1 cut(s)	121
BstKTI	GATC	1 cut(s)	67
BstMAI	GTCTC	1 cut(s)	349
BstMBI	GATC	1 cut(s)	64
BstNI	CCWGG	1 cut(s)	69
BstPI	GGTNACC	1 cut(s)	218
BstSCI	CCNGG	2 cut(s)	67, 106
BstSLI	GKGCMC	2 cut(s)	188, 379
Bsu15I	ATCGAT	1 cut(s)	281
BsuRI	GGCC	3 cut(s)	166, 334, 377
BsuTUI	ATCGAT	1 cut(s)	281
BtsCI	GGATG	1 cut(s)	121
BtsIMutI	CAGTG	1 cut(s)	189
Cfr10I	RCCGGY	1 cut(s)	222
Cfr13I	GGNCC	4 cut(s)	7, 232, 375, 376
ClaI	ATCGAT	1 cut(s)	281
CspAI	ACCGGT	1 cut(s)	222
CviJI	RGCY	5 cut(s)	166, 291, 334, 370, 377
CviKI_1	RGCY	5 cut(s)	166, 291, 334, 370, 377
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
EaeI	YGGCCR	2 cut(s)	164, 332
Eam1104I	CTCTTC	2 cut(s)	108, 249
EarI	CTCTTC	2 cut(s)	108, 249
Eco24I	GRGCYC	1 cut(s)	379
Eco47I	GGWCC	2 cut(s)	7, 232
Eco91I	GGTNACC	1 cut(s)	218
EcoO109I	RGGNCCY	1 cut(s)	232
EcoO65I	GGTNACC	1 cut(s)	218
EcoRII	CCWGG	1 cut(s)	67
EcoT38I	GRGCYC	1 cut(s)	379
FaiI	YATR	4 cut(s)	81, 93, 263, 373
FaqI	GGGAC	1 cut(s)	218
FauI	CCCGC	2 cut(s)	104, 314
Fnu4HI	GCNGC	1 cut(s)	319
FokI	GGATG	1 cut(s)	128
FriOI	GRGCYC	1 cut(s)	379
Fsp4HI	GCNGC	1 cut(s)	319
FspBI	CTAG	2 cut(s)	363, 388
GluI	GCNGC	1 cut(s)	319
GsaI	CCCAGC	1 cut(s)	55
HaeIII	GGCC	3 cut(s)	166, 334, 377
HapII	CCGG	3 cut(s)	108, 167, 223
HinfI	GANTC	1 cut(s)	133
HpaII	CCGG	3 cut(s)	108, 167, 223
HphI	GGTGA	4 cut(s)	142, 230, 304, 359
HpyAV	CCTTC	1 cut(s)	142
KflI	GGGWCCC	1 cut(s)	232
Kzo9I	GATC	1 cut(s)	64
LguI	GCTCTTC	1 cut(s)	249
LweI	GCATC	3 cut(s)	106, 229, 239
MaeI	CTAG	2 cut(s)	363, 388
MaeIII	GTNAC	2 cut(s)	218, 310
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MboII	GAAGA	2 cut(s)	95, 236
MhlI	GDGCHC	2 cut(s)	188, 379
MlsI	TGGCCA	1 cut(s)	334
MluCI	AATT	1 cut(s)	11
MluNI	TGGCCA	1 cut(s)	334
MnlI	CCTC	4 cut(s)	49, 111, 170, 248
Mox20I	TGGCCA	1 cut(s)	334
MscI	TGGCCA	1 cut(s)	334
Msp20I	TGGCCA	1 cut(s)	334
MspA1I	CMGCKG	1 cut(s)	318
MspI	CCGG	3 cut(s)	108, 167, 223
MspR9I	CCNGG	2 cut(s)	69, 108
MvaI	CCWGG	1 cut(s)	69
NciI	CCSGG	1 cut(s)	108
NdeII	GATC	1 cut(s)	64
NlaIV	GGNNCC	3 cut(s)	233, 234, 377
NmeAIII	GCCGAG	1 cut(s)	278
NmuCI	GTSAC	2 cut(s)	218, 310
PciSI	GCTCTTC	1 cut(s)	249
PfeI	GAWTC	1 cut(s)	133
PinAI	ACCGGT	1 cut(s)	222
PkrI	GCNGC	1 cut(s)	320
PpuMI	RGGWCCY	1 cut(s)	232
Psp5II	RGGWCCY	1 cut(s)	232
Psp6I	CCWGG	1 cut(s)	67
PspEI	GGTNACC	1 cut(s)	218
PspFI	CCCAGC	1 cut(s)	51
PspGI	CCWGG	1 cut(s)	67
PspN4I	GGNNCC	3 cut(s)	233, 234, 377
PspOMI	GGGCCC	1 cut(s)	375
PspPI	GGNCC	4 cut(s)	7, 232, 375, 376
PspPPI	RGGWCCY	1 cut(s)	232
SapI	GCTCTTC	1 cut(s)	249
SatI	GCNGC	1 cut(s)	319
Sau3AI	GATC	1 cut(s)	64
Sau96I	GGNCC	4 cut(s)	7, 232, 375, 376
ScrFI	CCNGG	2 cut(s)	69, 108
SduI	GDGCHC	2 cut(s)	188, 379
SetI	ASST	2 cut(s)	43, 259
SfaNI	GCATC	3 cut(s)	106, 229, 239
SinI	GGWCC	2 cut(s)	7, 232
Sse9I	AATT	1 cut(s)	11
SsiI	CCGC	3 cut(s)	111, 318, 321
SspMI	CTAG	2 cut(s)	363, 388
StyD4I	CCNGG	2 cut(s)	67, 106
TaqI	TCGA	2 cut(s)	247, 281
TasI	AATT	1 cut(s)	11
TauI	GCSGC	1 cut(s)	321
TfiI	GAWTC	1 cut(s)	133
TscAI	CASTG	1 cut(s)	196
TseFI	GTSAC	2 cut(s)	218, 310
Tsp45I	GTSAC	2 cut(s)	218, 310
TspRI	CASTG	1 cut(s)	196
VpaK11BI	GGWCC	2 cut(s)	7, 232
XcmI	CCANNNNNNNNNTGG	1 cut(s)	17
XspI	CTAG	2 cut(s)	363, 388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.