Rh6CG487900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0001941
Physical Location & Seq
Forward (+)
65580512 .. 65581027
516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG487900.1

Sequence Viewer

Length: 516 bp
ATGGAGAAAATCTCAGGCTTTTGCCTCTTCATCTTCGTCTTCCTTGTCTTCCGAGGCAGTGCGTCTGTTGAGCGGAGGTTGGGCGCTGATGGGGCTGTGTTGGTGGGCCAAGTTGCTGTTGGTACACCATCGGAGGGATGCGGTGATTACTGGGAGGAGTGGGATCTGGGGAGCAGTCTCGGCGATCTCAGGGTTTTGGGGCAAGGTCTCGCTGCAGATATGGTGGTGATGGGAGCTTGGTTGGATAGTTGGTTGACGAATAAGGGCGGAGGGGATCTGGTTTTTTCTTCTGCTGGTGGCTTTGGATCTTCATCTGCGTGGGACTACAACGCTAGGCTGAAGAACGTCAGATTTTGGTGCGAGGTGAGGGGATGGGGTTCTGGTGGTGATGGCCGAGCGATGGGGTCGGTTTGTTGGGACTTCGATGGCGGTGTTCTGTTCGTCAACGATTGCTATTGCAGTTTGGCATCCTCCATTGCAGGTCCTTGGGACGCGTCTGCCGGTGCTGTTGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

17.99

Weight (kDa)

4.33

Isoelectric Point (pI)

24.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 470
AccBSI CCGCTC 1 cut(s) 73
AccII CGCG 1 cut(s) 494
AciI CCGC 4 cut(s) 73, 141, 267, 429
AclWI GGATC 3 cut(s) 171, 282, 313
AcoI YGGCCR 1 cut(s) 391
AcuI CTGAAG 1 cut(s) 359
AfaI GTAC 1 cut(s) 124
AfiI CCNNNNNNNGG 2 cut(s) 134, 400
AflIII ACRYGT 1 cut(s) 492
AluBI AGCT 1 cut(s) 236
AluI AGCT 1 cut(s) 236
Alw26I GTCTC 2 cut(s) 182, 212
AlwI GGATC 3 cut(s) 171, 282, 313
AoxI GGCC 2 cut(s) 106, 391
ApeKI GCWGC 1 cut(s) 212
AspLEI GCGC 1 cut(s) 86
AspS9I GGNCC 2 cut(s) 106, 482
AsuHPI GGTGA 4 cut(s) 155, 238, 376, 398
AvaII GGWCC 1 cut(s) 482
BbsI GAAGAC 2 cut(s) 31, 40
BbvI GCAGC 1 cut(s) 199
BccI CCATC 7 cut(s) 83, 136, 223, 366, 383, 394, 419
BcoDI GTCTC 2 cut(s) 182, 212
BfaI CTAG 2 cut(s) 333, 514
BfmI CTRYAG 1 cut(s) 213
BfoI RGCGCY 1 cut(s) 87
BfuAI ACCTGC 1 cut(s) 470
BisI GCNGC 1 cut(s) 213
BlsI GCNGC 1 cut(s) 214
Bme18I GGWCC 1 cut(s) 482
BmgT120I GGNCC 2 cut(s) 106, 482
BmrI ACTGGG 1 cut(s) 160
BmsI GCATC 2 cut(s) 128, 476
BmuI ACTGGG 1 cut(s) 160
BpiI GAAGAC 2 cut(s) 31, 40
BplI GAGNNNNNCTC 1 cut(s) 28
BsaBI GATNNNNATC 1 cut(s) 310
BsaI GGTCTC 1 cut(s) 212
BsaJI CCNNGG 2 cut(s) 52, 485
Bsc4I CCNNNNNNNGG 2 cut(s) 134, 400
Bse118I RCCGGY 1 cut(s) 500
Bse1I ACTGG 1 cut(s) 155
Bse3DI GCAATG 1 cut(s) 474
Bse8I GATNNNNATC 1 cut(s) 310
BseDI CCNNGG 2 cut(s) 52, 485
BseGI GGATG 3 cut(s) 143, 377, 467
BseJI GATNNNNATC 1 cut(s) 310
BseLI CCNNNNNNNGG 2 cut(s) 134, 400
BseMI GCAATG 1 cut(s) 474
BseMII CTCAG 2 cut(s) 27, 202
BseNI ACTGG 1 cut(s) 155
BseRI GAGGAG 1 cut(s) 170
BseXI GCAGC 1 cut(s) 199
Bsh1236I CGCG 1 cut(s) 494
BshFI GGCC 2 cut(s) 108, 393
BsiSI CCGG 1 cut(s) 501
BslFI GGGAC 3 cut(s) 335, 431, 503
BslI CCNNNNNNNGG 2 cut(s) 134, 400
BsmAI GTCTC 2 cut(s) 182, 212
BsmFI GGGAC 3 cut(s) 335, 431, 503
BsnI GGCC 2 cut(s) 108, 393
Bso31I GGTCTC 1 cut(s) 212
Bsp143I GATC 4 cut(s) 163, 184, 274, 305
BspACI CCGC 4 cut(s) 73, 141, 267, 429
BspANI GGCC 2 cut(s) 108, 393
BspCNI CTCAG 2 cut(s) 26, 201
BspFNI CGCG 1 cut(s) 494
BspMAI CTGCAG 1 cut(s) 217
BspMI ACCTGC 1 cut(s) 470
BspPI GGATC 3 cut(s) 171, 282, 313
BspTNI GGTCTC 1 cut(s) 212
BsrBI CCGCTC 1 cut(s) 73
BsrDI GCAATG 1 cut(s) 474
BsrFI RCCGGY 1 cut(s) 500
BsrI ACTGG 1 cut(s) 155
BssAI RCCGGY 1 cut(s) 500
BssECI CCNNGG 2 cut(s) 52, 485
BssMI GATC 4 cut(s) 163, 184, 274, 305
BssT1I CCWWGG 1 cut(s) 485
Bst6I CTCTTC 1 cut(s) 32
BstDEI CTNAG 2 cut(s) 13, 188
BstF5I GGATG 3 cut(s) 143, 377, 467
BstFNI CGCG 1 cut(s) 494
BstH2I RGCGCY 1 cut(s) 87
BstHHI GCGC 1 cut(s) 86
BstKTI GATC 4 cut(s) 166, 187, 277, 308
BstMAI GTCTC 2 cut(s) 182, 212
BstMBI GATC 4 cut(s) 163, 184, 274, 305
BstMWI GCNNNNNNNGC 2 cut(s) 92, 180
BstSFI CTRYAG 1 cut(s) 213
BstUI CGCG 1 cut(s) 494
BstV1I GCAGC 1 cut(s) 199
BstV2I GAAGAC 2 cut(s) 31, 40
BstX2I RGATCY 3 cut(s) 163, 274, 305
BstYI RGATCY 3 cut(s) 163, 274, 305
BsuRI GGCC 2 cut(s) 108, 393
BtgZI GCGATG 1 cut(s) 413
BtsCI GGATG 3 cut(s) 143, 377, 467
BtsI GCAGTG 1 cut(s) 64
BtsIMutI CAGTG 1 cut(s) 64
BveI ACCTGC 1 cut(s) 470
CfoI GCGC 1 cut(s) 86
Cfr10I RCCGGY 1 cut(s) 500
Cfr13I GGNCC 2 cut(s) 106, 482
CseI GACGC 3 cut(s) 51, 483, 500
Csp6I GTAC 1 cut(s) 123
CviJI RGCY 7 cut(s) 18, 95, 108, 236, 300, 337, 393
CviKI_1 RGCY 7 cut(s) 18, 95, 108, 236, 300, 337, 393
CviQI GTAC 1 cut(s) 123
DdeI CTNAG 2 cut(s) 13, 188
DpnI GATC 4 cut(s) 165, 186, 276, 307
DpnII GATC 4 cut(s) 163, 184, 274, 305
EaeI YGGCCR 1 cut(s) 391
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
EciI GGCGGA 1 cut(s) 282
Eco130I CCWWGG 1 cut(s) 485
Eco31I GGTCTC 1 cut(s) 212
Eco47I GGWCC 1 cut(s) 482
Eco57I CTGAAG 1 cut(s) 359
EcoO109I RGGNCCY 1 cut(s) 482
EcoT14I CCWWGG 1 cut(s) 485
ErhI CCWWGG 1 cut(s) 485
FaiI YATR 1 cut(s) 221
FaqI GGGAC 3 cut(s) 335, 431, 503
Fnu4HI GCNGC 1 cut(s) 213
FokI GGATG 3 cut(s) 150, 384, 454
Fsp4HI GCNGC 1 cut(s) 213
FspBI CTAG 2 cut(s) 333, 514
GlaI GCGC 1 cut(s) 85
GluI GCNGC 1 cut(s) 213
HaeII RGCGCY 1 cut(s) 87
HaeIII GGCC 2 cut(s) 108, 393
HapII CCGG 1 cut(s) 501
HgaI GACGC 3 cut(s) 51, 483, 500
HhaI GCGC 1 cut(s) 86
Hin6I GCGC 1 cut(s) 84
HinP1I GCGC 1 cut(s) 84
HincII GTYRAC 2 cut(s) 255, 445
HindII GTYRAC 2 cut(s) 255, 445
HpaII CCGG 1 cut(s) 501
HphI GGTGA 4 cut(s) 155, 238, 376, 398
Hpy166II GTNNAC 3 cut(s) 125, 255, 445
Hpy188I TCNGA 3 cut(s) 53, 133, 350
Hpy8I GTNNAC 3 cut(s) 125, 255, 445
HpyCH4IV ACGT 1 cut(s) 345
HpyCH4V TGCA 3 cut(s) 215, 459, 479
HpyF10VI GCNNNNNNNGC 2 cut(s) 92, 180
HpyF3I CTNAG 2 cut(s) 13, 188
HpySE526I ACGT 1 cut(s) 345
HspAI GCGC 1 cut(s) 84
Kzo9I GATC 4 cut(s) 163, 184, 274, 305
LmnI GCTCC 2 cut(s) 171, 233
LpnPI CCDG 7 cut(s) 136, 152, 175, 263, 279, 366, 465
Lsp1109I GCAGC 1 cut(s) 199
LweI GCATC 2 cut(s) 128, 476
MaeI CTAG 2 cut(s) 333, 514
MaeII ACGT 1 cut(s) 345
MalI GATC 4 cut(s) 165, 186, 276, 307
MbiI CCGCTC 1 cut(s) 73
MboI GATC 4 cut(s) 163, 184, 274, 305
MboII GAAGA 7 cut(s) 19, 25, 31, 40, 279, 300, 352
MflI RGATCY 3 cut(s) 163, 274, 305
MluI ACGCGT 1 cut(s) 492
MmeI TCCRAC 1 cut(s) 222
MnlI CCTC 9 cut(s) 35, 47, 69, 127, 148, 263, 355, 360, 481
MslI CAYNNNNRTG 1 cut(s) 316
MspI CCGG 1 cut(s) 501
MvnI CGCG 1 cut(s) 494
MwoI GCNNNNNNNGC 2 cut(s) 92, 180
NdeII GATC 4 cut(s) 163, 184, 274, 305
NmeAIII GCCGAG 2 cut(s) 159, 419
PkrI GCNGC 1 cut(s) 214
PpuMI RGGWCCY 1 cut(s) 482
Psp5II RGGWCCY 1 cut(s) 482
PspPI GGNCC 2 cut(s) 106, 482
PspPPI RGGWCCY 1 cut(s) 482
PstI CTGCAG 1 cut(s) 217
PsuI RGATCY 3 cut(s) 163, 274, 305
RsaI GTAC 1 cut(s) 124
RsaNI GTAC 1 cut(s) 123
RseI CAYNNNNRTG 1 cut(s) 316
SatI GCNGC 1 cut(s) 213
Sau3AI GATC 4 cut(s) 163, 184, 274, 305
Sau96I GGNCC 2 cut(s) 106, 482
SetI ASST 6 cut(s) 80, 208, 238, 348, 366, 484
SfaNI GCATC 2 cut(s) 128, 476
SfcI CTRYAG 1 cut(s) 213
SinI GGWCC 1 cut(s) 482
SmiMI CAYNNNNRTG 1 cut(s) 316
SsiI CCGC 4 cut(s) 73, 141, 267, 429
SspMI CTAG 2 cut(s) 333, 514
StyI CCWWGG 1 cut(s) 485
TaiI ACGT 1 cut(s) 348
TaqI TCGA 1 cut(s) 423
TscAI CASTG 1 cut(s) 64
TseI GCWGC 1 cut(s) 212
TspDTI ATGAA 2 cut(s) 19, 300
TspRI CASTG 1 cut(s) 64
VpaK11BI GGWCC 1 cut(s) 482
XcmI CCANNNNNNNNNTGG 1 cut(s) 116
XspI CTAG 2 cut(s) 333, 514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.