Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001941

Physical Location & Seq

Genomic Coordinates Reverse (-)

64973481 .. 64976953

Gene Structure 3473 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG489100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGGTTGGGGCTGGGTCTCAGGAATCTTCCTCCGGATACGATTTTGGGTGGCGGAGGTCTGGGTGATATTGATCGTGCAGGTGGCGGCGGTGCTTTGGTACAATCAGAAGTTGGTTATCCGGCCTTGTTTGTTCTGGTTGATAAGGTCGGCGGTGGACGGGGAGGTGGCTCCGATGGGTGTATTGACGTCGGTGCGCATCACTTCTGGGTGTGGATTGGCTGGTACGGTGGCGGCGGCAGAACTGCCTTCCCACTTAGGTGTGTCTGTTGAGAGAAGTTTGGGCGCTGCTGGGGCTGTTTCAGCGAGCCAACATACTGTGGGTACGGTATCGGAAATAGACGGTGATCACTGGGAGGAGTGGGATCCGGGTAGAAGCCACGATGATCTCAGTGGTTTGGGGCGAGGTCTTGCTGCAGATGCGGTGGTGATTGGTGTTTGGCCGGATCGATGGTTGAAGGATAAGGGCAGTGGGAACCCGATTTCTTCTTCTGCAGGTGGGTGTGGATCTTCATCCACATTGAAGGGGATCGATGGTATCTCTCTACAACTCCGGGACTACGACGCTATCGGGACTAGGCTGGAAAAGGTCGGAGCCTGGTGCGAGGTGAGGGGTGGTGTCGGCTTGTTGGGGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

212

Amino Acids

22.35

Weight (kDa)

5.53

Isoelectric Point (pI)

25.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001941)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0242461
rosa_laevigata	RLG00000000198 RLG00000001395 RLG00000002534 RLG00000004260 RLG00000004509 RLG00000005005 RLG00000007730 RLG00000007778 RLG00000008977 RLG00000012806 RLG00000014111 RLG00000015644 RLG00000015853 RLG00000023399 RLG00000024480 RLG00000025907 RLG00000027839 RLG00000037045
rosa_multiflora	Rmu_sc0002184.1_g000017 Rmu_ssc0000281.1_g000033
rosa_roxburghii	Rroxscaffold_4G00320490 Rroxscaffold_5G00343060
rosa_rugosa	Rorug05G0168200 Rorug06G0037900 Rorug06G0190800
rosa_samantha	Rh2CG548800 Rh3CG231400 Rh3DG179100 Rh3DG231300 Rh3DG294200 Rh4DG182500 Rh4DG266400 Rh5AG258800 Rh5AG498800 Rh5CG543300 Rh5DG558400 Rh6BG482600 Rh6CG221300 Rh6CG487900 Rh6DG489100 Rh7AG193500 Rh7AG247400 Rh7BG033900 Rh7DG233300 Rh7DG253600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	70, 485
AatII	GACGTC	1 cut(s)	191
Acc16I	TGCGCA	1 cut(s)	197
Acc36I	ACCTGC	2 cut(s)	70, 485
AccIII	TCCGGA	1 cut(s)	33
AciI	CCGC	7 cut(s)	53, 86, 89, 152, 233, 236, 422
AclWI	GGATC	5 cut(s)	359, 372, 453, 514, 536
AcoI	YGGCCR	1 cut(s)	440
AcyI	GRCGYC	1 cut(s)	188
AfaI	GTAC	3 cut(s)	101, 226, 325
AgsI	TTSAA	2 cut(s)	457, 523
AjnI	CCWGG	1 cut(s)	596
AleI	CACNNNNGTG	1 cut(s)	258
Alw26I	GTCTC	1 cut(s)	22
AlwI	GGATC	5 cut(s)	359, 372, 453, 514, 536
Aor13HI	TCCGGA	1 cut(s)	33
AoxI	GGCC	2 cut(s)	122, 440
ApeKI	GCWGC	2 cut(s)	287, 413
AspLEI	GCGC	2 cut(s)	198, 287
AsuC2I	CCSGG	2 cut(s)	369, 554
AsuHPI	GGTGA	4 cut(s)	76, 356, 439, 619
BamHI	GGATCC	1 cut(s)	364
BbvI	GCAGC	2 cut(s)	274, 400
BccI	CCATC	3 cut(s)	169, 444, 527
BciT130I	CCWGG	1 cut(s)	598
BciVI	GTATCC	1 cut(s)	30
BclI	TGATCA	1 cut(s)	346
BcnI	CCSGG	2 cut(s)	369, 554
BcoDI	GTCTC	1 cut(s)	22
BfaI	CTAG	1 cut(s)	576
BfmI	CTRYAG	2 cut(s)	414, 492
BfoI	RGCGCY	1 cut(s)	288
BfuAI	ACCTGC	2 cut(s)	70, 485
BfuI	GTATCC	1 cut(s)	30
BisI	GCNGC	5 cut(s)	87, 234, 237, 288, 414
BlsI	GCNGC	5 cut(s)	88, 235, 238, 289, 415
Bme1390I	CCNGG	3 cut(s)	369, 554, 598
BmiI	GGNNCC	4 cut(s)	171, 366, 476, 595
BmrFI	CCNGG	3 cut(s)	369, 554, 598
BmrI	ACTGGG	1 cut(s)	361
BmsI	GCATC	2 cut(s)	207, 409
BmuI	ACTGGG	1 cut(s)	361
BpuMI	CCSGG	2 cut(s)	369, 554
Bsa29I	ATCGAT	2 cut(s)	448, 531
BsaBI	GATNNNNATC	2 cut(s)	71, 511
BsaHI	GRCGYC	1 cut(s)	188
BsaI	GGTCTC	1 cut(s)	22
BsaWI	WCCGGW	1 cut(s)	33
Bse1I	ACTGG	1 cut(s)	356
Bse8I	GATNNNNATC	2 cut(s)	71, 511
BseAI	TCCGGA	1 cut(s)	33
BseBI	CCWGG	1 cut(s)	598
BseCI	ATCGAT	2 cut(s)	448, 531
BseGI	GGATG	1 cut(s)	512
BseJI	GATNNNNATC	2 cut(s)	71, 511
BseMII	CTCAG	2 cut(s)	33, 403
BseNI	ACTGG	1 cut(s)	356
BseRI	GAGGAG	1 cut(s)	371
BseXI	GCAGC	2 cut(s)	274, 400
BseYI	CCCAGC	2 cut(s)	12, 290
BsgI	GTGCAG	1 cut(s)	98
BshFI	GGCC	2 cut(s)	124, 442
BshVI	ATCGAT	2 cut(s)	448, 531
BsiSI	CCGG	5 cut(s)	34, 121, 368, 443, 553
BslFI	GGGAC	2 cut(s)	569, 586
BsmAI	GTCTC	1 cut(s)	22
BsmFI	GGGAC	2 cut(s)	569, 586
BsnI	GGCC	2 cut(s)	124, 442
Bso31I	GGTCTC	1 cut(s)	22
Bsp13I	TCCGGA	1 cut(s)	33
Bsp143I	GATC	7 cut(s)	72, 346, 364, 385, 445, 506, 528
BspACI	CCGC	7 cut(s)	53, 86, 89, 152, 233, 236, 422
BspANI	GGCC	2 cut(s)	124, 442
BspCNI	CTCAG	2 cut(s)	32, 402
BspDI	ATCGAT	2 cut(s)	448, 531
BspEI	TCCGGA	1 cut(s)	33
BspLI	GGNNCC	4 cut(s)	171, 366, 476, 595
BspMAI	CTGCAG	2 cut(s)	418, 496
BspMI	ACCTGC	2 cut(s)	70, 485
BspPI	GGATC	5 cut(s)	359, 372, 453, 514, 536
BspTNI	GGTCTC	1 cut(s)	22
BsrI	ACTGG	1 cut(s)	356
BssMI	GATC	7 cut(s)	72, 346, 364, 385, 445, 506, 528
BssNI	GRCGYC	1 cut(s)	188
Bst2UI	CCWGG	1 cut(s)	598
Bst4CI	ACNGT	4 cut(s)	229, 319, 328, 344
BstACI	GRCGYC	1 cut(s)	188
BstC8I	GCNNGC	1 cut(s)	307
BstDEI	CTNAG	3 cut(s)	19, 256, 389
BstF5I	GGATG	1 cut(s)	512
BstH2I	RGCGCY	1 cut(s)	288
BstHHI	GCGC	2 cut(s)	198, 287
BstKTI	GATC	7 cut(s)	75, 349, 367, 388, 448, 509, 531
BstMAI	GTCTC	1 cut(s)	22
BstMBI	GATC	7 cut(s)	72, 346, 364, 385, 445, 506, 528
BstMWI	GCNNNNNNNGC	3 cut(s)	293, 302, 419
BstNI	CCWGG	1 cut(s)	598
BstSCI	CCNGG	3 cut(s)	367, 552, 596
BstSFI	CTRYAG	2 cut(s)	414, 492
BstV1I	GCAGC	2 cut(s)	274, 400
BstX2I	RGATCY	2 cut(s)	364, 506
BstYI	RGATCY	2 cut(s)	364, 506
Bsu15I	ATCGAT	2 cut(s)	448, 531
BsuI	GTATCC	1 cut(s)	30
BsuRI	GGCC	2 cut(s)	124, 442
BsuTUI	ATCGAT	2 cut(s)	448, 531
BtsCI	GGATG	1 cut(s)	512
BtsI	GCAGTG	1 cut(s)	475
BtsIMutI	CAGTG	3 cut(s)	349, 397, 475
BveI	ACCTGC	2 cut(s)	70, 485
Cac8I	GCNNGC	1 cut(s)	307
CfoI	GCGC	2 cut(s)	198, 287
ClaI	ATCGAT	2 cut(s)	448, 531
CseI	GACGC	1 cut(s)	572
Csp6I	GTAC	3 cut(s)	100, 225, 324
CviQI	GTAC	3 cut(s)	100, 225, 324
DdeI	CTNAG	3 cut(s)	19, 256, 389
DpnI	GATC	7 cut(s)	74, 348, 366, 387, 447, 508, 530
DpnII	GATC	7 cut(s)	72, 346, 364, 385, 445, 506, 528
EaeI	YGGCCR	1 cut(s)	440
EciI	GGCGGA	1 cut(s)	68
Eco31I	GGTCTC	1 cut(s)	22
EcoRII	CCWGG	1 cut(s)	596
FaiI	YATR	1 cut(s)	315
FaqI	GGGAC	2 cut(s)	569, 586
FbaI	TGATCA	1 cut(s)	346
Fnu4HI	GCNGC	5 cut(s)	87, 234, 237, 288, 414
FokI	GGATG	1 cut(s)	499
Fsp4HI	GCNGC	5 cut(s)	87, 234, 237, 288, 414
FspAI	RTGCGCAY	1 cut(s)	197
FspBI	CTAG	1 cut(s)	576
FspI	TGCGCA	1 cut(s)	197
GlaI	GCGC	2 cut(s)	197, 286
GluI	GCNGC	5 cut(s)	87, 234, 237, 288, 414
GsaI	CCCAGC	2 cut(s)	16, 294
HaeII	RGCGCY	1 cut(s)	288
HaeIII	GGCC	2 cut(s)	124, 442
HapII	CCGG	5 cut(s)	34, 121, 368, 443, 553
HgaI	GACGC	1 cut(s)	572
HhaI	GCGC	2 cut(s)	198, 287
Hin1I	GRCGYC	1 cut(s)	188
Hin6I	GCGC	2 cut(s)	196, 285
HinP1I	GCGC	2 cut(s)	196, 285
HinfI	GANTC	1 cut(s)	24
HpaII	CCGG	5 cut(s)	34, 121, 368, 443, 553
HphI	GGTGA	4 cut(s)	76, 356, 439, 619
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188I	TCNGA	4 cut(s)	108, 174, 334, 593
Hpy188III	TCNNGA	3 cut(s)	21, 34, 571
Hpy8I	GTNNAC	1 cut(s)	157
Hpy99I	CGWCG	2 cut(s)	193, 566
HpyAV	CCTTC	3 cut(s)	258, 451, 517
HpyCH4III	ACNGT	4 cut(s)	229, 319, 328, 344
HpyCH4IV	ACGT	1 cut(s)	188
HpyCH4V	TGCA	3 cut(s)	79, 416, 494
HpyF10VI	GCNNNNNNNGC	3 cut(s)	293, 302, 419
HpyF3I	CTNAG	3 cut(s)	19, 256, 389
HpySE526I	ACGT	1 cut(s)	188
Hsp92I	GRCGYC	1 cut(s)	188
HspAI	GCGC	2 cut(s)	196, 285
Kpn2I	TCCGGA	1 cut(s)	33
Ksp22I	TGATCA	1 cut(s)	346
Kzo9I	GATC	7 cut(s)	72, 346, 364, 385, 445, 506, 528
LmnI	GCTCC	2 cut(s)	175, 593
Lsp1109I	GCAGC	2 cut(s)	274, 400
LweI	GCATC	2 cut(s)	207, 409
MaeI	CTAG	1 cut(s)	576
MaeII	ACGT	1 cut(s)	188
MalI	GATC	7 cut(s)	74, 348, 366, 387, 447, 508, 530
MboI	GATC	7 cut(s)	72, 346, 364, 385, 445, 506, 528
MboII	GAAGA	4 cut(s)	19, 477, 480, 501
MflI	RGATCY	2 cut(s)	364, 506
MmeI	TCCRAC	1 cut(s)	571
MnlI	CCTC	7 cut(s)	41, 49, 157, 349, 398, 598, 603
MroI	TCCGGA	1 cut(s)	33
MslI	CAYNNNNRTG	1 cut(s)	258
MspI	CCGG	5 cut(s)	34, 121, 368, 443, 553
MspR9I	CCNGG	3 cut(s)	369, 554, 598
MvaI	CCWGG	1 cut(s)	598
MwoI	GCNNNNNNNGC	3 cut(s)	293, 302, 419
NciI	CCSGG	2 cut(s)	369, 554
NdeII	GATC	7 cut(s)	72, 346, 364, 385, 445, 506, 528
NlaIV	GGNNCC	4 cut(s)	171, 366, 476, 595
NsbI	TGCGCA	1 cut(s)	197
OliI	CACNNNNGTG	1 cut(s)	258
PaqCI	CACCTGC	2 cut(s)	70, 485
PfeI	GAWTC	1 cut(s)	24
PfoI	TCCNGGA	1 cut(s)	552
PkrI	GCNGC	5 cut(s)	88, 235, 238, 289, 415
Psp6I	CCWGG	1 cut(s)	596
PspFI	CCCAGC	2 cut(s)	12, 290
PspGI	CCWGG	1 cut(s)	596
PspN4I	GGNNCC	4 cut(s)	171, 366, 476, 595
PstI	CTGCAG	2 cut(s)	418, 496
PsuI	RGATCY	2 cut(s)	364, 506
RsaI	GTAC	3 cut(s)	101, 226, 325
RsaNI	GTAC	3 cut(s)	100, 225, 324
RseI	CAYNNNNRTG	1 cut(s)	258
SatI	GCNGC	5 cut(s)	87, 234, 237, 288, 414
Sau3AI	GATC	7 cut(s)	72, 346, 364, 385, 445, 506, 528
ScrFI	CCNGG	3 cut(s)	369, 554, 598
SfaNI	GCATC	2 cut(s)	207, 409
SfcI	CTRYAG	2 cut(s)	414, 492
SmiMI	CAYNNNNRTG	1 cut(s)	258
SsiI	CCGC	7 cut(s)	53, 86, 89, 152, 233, 236, 422
SspMI	CTAG	1 cut(s)	576
StyD4I	CCNGG	3 cut(s)	367, 552, 596
TaaI	ACNGT	4 cut(s)	229, 319, 328, 344
TaiI	ACGT	1 cut(s)	191
TaqI	TCGA	2 cut(s)	448, 531
TauI	GCSGC	3 cut(s)	89, 236, 239
TfiI	GAWTC	1 cut(s)	24
TscAI	CASTG	3 cut(s)	356, 397, 475
TseI	GCWGC	2 cut(s)	287, 413
TspDTI	ATGAA	1 cut(s)	501
TspRI	CASTG	3 cut(s)	356, 397, 475
XspI	CTAG	1 cut(s)	576
ZraI	GACGTC	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.