Rh7DG233300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0001941
Physical Location & Seq
Forward (+)
23218793 .. 23220149
1357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG233300.1

Sequence Viewer

Length: 261 bp
ATGGATTGGTGGTTGAGATTCCCTCAATCCACTCAGACTGCGTCTGTTGAGCGGAGTTTGGGCGCTGCTGGGGCTGTGTCGGTGGGCCAATTTATTGTTGGTACACCATCGAAGGATAAGGCTGGTGGGAACCCGATTTCTTCTTCTGCCAGTGGGATTGGCTCTTCATCTACTTTGGAGGGGATCGGTGGTATCTCTCTACAATTCTGGGACTACGACGCTATCGAGACGGGGTTGAAGAATGTCGCATCCTGGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

8.88

Weight (kDa)

4.66

Isoelectric Point (pI)

38.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 52
AciI CCGC 1 cut(s) 52
AclWI GGATC 1 cut(s) 191
AfaI GTAC 1 cut(s) 103
AgsI TTSAA 1 cut(s) 238
AjnI CCWGG 1 cut(s) 251
Alw26I GTCTC 1 cut(s) 221
AlwI GGATC 1 cut(s) 191
AoxI GGCC 1 cut(s) 85
ApeKI GCWGC 1 cut(s) 65
AspLEI GCGC 1 cut(s) 65
AspS9I GGNCC 1 cut(s) 85
BbvI GCAGC 1 cut(s) 52
BccI CCATC 1 cut(s) 115
BciT130I CCWGG 1 cut(s) 253
BcoDI GTCTC 1 cut(s) 221
BfoI RGCGCY 1 cut(s) 66
BisI GCNGC 1 cut(s) 66
BlsI GCNGC 1 cut(s) 67
Bme1390I CCNGG 1 cut(s) 253
BmgT120I GGNCC 1 cut(s) 85
BmiI GGNNCC 1 cut(s) 131
BmrFI CCNGG 1 cut(s) 253
BmsI GCATC 1 cut(s) 257
BplI GAGNNNNNCTC 2 cut(s) 7, 39
Bse1I ACTGG 1 cut(s) 150
BseBI CCWGG 1 cut(s) 253
BseGI GGATG 1 cut(s) 248
BseMII CTCAG 1 cut(s) 47
BseNI ACTGG 1 cut(s) 150
BseXI GCAGC 1 cut(s) 52
BseYI CCCAGC 1 cut(s) 68
BshFI GGCC 1 cut(s) 87
BslFI GGGAC 1 cut(s) 224
BsmAI GTCTC 1 cut(s) 221
BsmBI CGTCTC 1 cut(s) 221
BsmFI GGGAC 1 cut(s) 224
BsnI GGCC 1 cut(s) 87
Bsp143I GATC 1 cut(s) 183
BspACI CCGC 1 cut(s) 52
BspANI GGCC 1 cut(s) 87
BspCNI CTCAG 1 cut(s) 46
BspLI GGNNCC 1 cut(s) 131
BspPI GGATC 1 cut(s) 191
BspQI GCTCTTC 1 cut(s) 169
BsrBI CCGCTC 1 cut(s) 52
BsrI ACTGG 1 cut(s) 150
BssMI GATC 1 cut(s) 183
Bst2UI CCWGG 1 cut(s) 253
Bst6I CTCTTC 1 cut(s) 169
BstDEI CTNAG 1 cut(s) 33
BstF5I GGATG 1 cut(s) 248
BstH2I RGCGCY 1 cut(s) 66
BstHHI GCGC 1 cut(s) 65
BstKTI GATC 1 cut(s) 186
BstMAI GTCTC 1 cut(s) 221
BstMBI GATC 1 cut(s) 183
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstNI CCWGG 1 cut(s) 253
BstSCI CCNGG 1 cut(s) 251
BstV1I GCAGC 1 cut(s) 52
BsuRI GGCC 1 cut(s) 87
BtsCI GGATG 1 cut(s) 248
BtsIMutI CAGTG 1 cut(s) 157
CfoI GCGC 1 cut(s) 65
Cfr13I GGNCC 1 cut(s) 85
CseI GACGC 2 cut(s) 30, 227
Csp6I GTAC 1 cut(s) 102
CviJI RGCY 4 cut(s) 74, 87, 122, 162
CviKI_1 RGCY 4 cut(s) 74, 87, 122, 162
CviQI GTAC 1 cut(s) 102
DdeI CTNAG 1 cut(s) 33
DpnI GATC 1 cut(s) 185
DpnII GATC 1 cut(s) 183
Eam1104I CTCTTC 1 cut(s) 169
EarI CTCTTC 1 cut(s) 169
EcoRII CCWGG 1 cut(s) 251
Esp3I CGTCTC 1 cut(s) 221
FaiI YATR 1 cut(s) 259
FaqI GGGAC 1 cut(s) 224
Fnu4HI GCNGC 1 cut(s) 66
FokI GGATG 1 cut(s) 235
Fsp4HI GCNGC 1 cut(s) 66
GlaI GCGC 1 cut(s) 64
GluI GCNGC 1 cut(s) 66
GsaI CCCAGC 1 cut(s) 72
HaeII RGCGCY 1 cut(s) 66
HaeIII GGCC 1 cut(s) 87
HgaI GACGC 2 cut(s) 30, 227
HhaI GCGC 1 cut(s) 65
Hin6I GCGC 1 cut(s) 63
HinP1I GCGC 1 cut(s) 63
HinfI GANTC 1 cut(s) 18
Hpy166II GTNNAC 1 cut(s) 104
Hpy188I TCNGA 1 cut(s) 36
Hpy188III TCNNGA 1 cut(s) 226
Hpy8I GTNNAC 1 cut(s) 104
Hpy99I CGWCG 1 cut(s) 221
HpyAV CCTTC 1 cut(s) 106
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
HpyF3I CTNAG 1 cut(s) 33
HspAI GCGC 1 cut(s) 63
Kzo9I GATC 1 cut(s) 183
LguI GCTCTTC 1 cut(s) 169
LpnPI CCDG 5 cut(s) 54, 108, 163, 193, 238
Lsp1109I GCAGC 1 cut(s) 52
LweI GCATC 1 cut(s) 257
MalI GATC 1 cut(s) 185
MbiI CCGCTC 1 cut(s) 52
MboI GATC 1 cut(s) 183
MboII GAAGA 4 cut(s) 132, 135, 156, 250
MluCI AATT 2 cut(s) 89, 203
MnlI CCTC 2 cut(s) 33, 172
MspR9I CCNGG 1 cut(s) 253
MvaI CCWGG 1 cut(s) 253
MwoI GCNNNNNNNGC 1 cut(s) 71
NdeII GATC 1 cut(s) 183
NlaIV GGNNCC 1 cut(s) 131
PciSI GCTCTTC 1 cut(s) 169
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PfeI GAWTC 1 cut(s) 18
PflFI GACNNNGTC 1 cut(s) 40
PkrI GCNGC 1 cut(s) 67
Psp6I CCWGG 1 cut(s) 251
PspFI CCCAGC 1 cut(s) 68
PspGI CCWGG 1 cut(s) 251
PspN4I GGNNCC 1 cut(s) 131
PspPI GGNCC 1 cut(s) 85
PsyI GACNNNGTC 1 cut(s) 40
RsaI GTAC 1 cut(s) 103
RsaNI GTAC 1 cut(s) 102
SapI GCTCTTC 1 cut(s) 169
SatI GCNGC 1 cut(s) 66
Sau3AI GATC 1 cut(s) 183
Sau96I GGNCC 1 cut(s) 85
ScrFI CCNGG 1 cut(s) 253
SfaNI GCATC 1 cut(s) 257
SgeI CNNG 7 cut(s) 81, 135, 145, 162, 220, 238, 243
Sse9I AATT 2 cut(s) 89, 203
SsiI CCGC 1 cut(s) 52
StyD4I CCNGG 1 cut(s) 251
TaqI TCGA 2 cut(s) 110, 225
TasI AATT 2 cut(s) 89, 203
TfiI GAWTC 1 cut(s) 18
TscAI CASTG 1 cut(s) 157
TseI GCWGC 1 cut(s) 65
TspDTI ATGAA 1 cut(s) 156
TspRI CASTG 1 cut(s) 157
Tth111I GACNNNGTC 1 cut(s) 40
XcmI CCANNNNNNNNNTGG 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.