RLG00000004260

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001941
Physical Location & Seq
Reverse (-)
57789386 .. 57790012
627 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004260

Sequence Viewer

Length: 552 bp
ATGGGTGCGGAAGGGAGCTTTTCTCTGGATGGATTGCATGACGCTATCGATGTCGGGTCTGATATAGGATCTATGCTTGGTGGTGTTGACGATTGTTGTGATGGTGATCGGGTTTGCTCTCTGGAGTTTGTCGCGGACGGTGAAGAATGGAGAGGTTCCCAATCTGGGAGTCTGAGGAAGTCCGGCGGGGTAGGTTGGCTGGGTTCAATCAAGTCTGGTGTGATGGCGACGGCCGTGTGTTGGGGTGTATGGCCTTATGGGTTTCTTCGATCTGTTACAAGATCGGCGATCACCGTGGGCTGGTGGTGGCTCAGAGTCTTAGGTGGTAGTAATATGGAAAGGACGAAAGTCGTTGTTGCTGATGGAGACGGTGCACTCCGACGATGGCATAGCTCATCTTGCTGGAGTCGGGTTGGGCTCTTTGGCTCTGGGTGGGCTGCAATGGTTGGACCGGCTTCTTGTTGGGTTCATAAGGCATTTCTTGCTGAAGTTACAGACAAGGAAGAAGGAATGGAAAAGGAGGCTACTGCTCCTCTTCTGGAAACTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

184

Amino Acids

19.5

Weight (kDa)

4.92

Isoelectric Point (pI)

42.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 134
AciI CCGC 3 cut(s) 8, 134, 186
AclWI GGATC 1 cut(s) 76
AcoI YGGCCR 1 cut(s) 231
AcuI CTGAAG 1 cut(s) 507
AfiI CCNNNNNNNGG 3 cut(s) 165, 240, 300
AgsI TTSAA 1 cut(s) 207
AluBI AGCT 2 cut(s) 18, 393
AluI AGCT 2 cut(s) 18, 393
Alw21I GWGCWC 1 cut(s) 376
Alw26I GTCTC 1 cut(s) 360
Alw44I GTGCAC 1 cut(s) 372
AlwI GGATC 1 cut(s) 76
AoxI GGCC 2 cut(s) 231, 251
ApaLI GTGCAC 1 cut(s) 372
ApeKI GCWGC 1 cut(s) 437
AspS9I GGNCC 1 cut(s) 449
AsuHPI GGTGA 3 cut(s) 116, 152, 283
AvaII GGWCC 1 cut(s) 449
BaeGI GKGCMC 1 cut(s) 376
BanII GRGCYC 1 cut(s) 420
Bbv12I GWGCWC 1 cut(s) 376
BbvI GCAGC 1 cut(s) 424
BccI CCATC 5 cut(s) 23, 95, 217, 356, 378
BceAI ACGGC 2 cut(s) 218, 246
BcoDI GTCTC 1 cut(s) 360
BisI GCNGC 1 cut(s) 438
BlsI GCNGC 1 cut(s) 439
Bme18I GGWCC 1 cut(s) 449
BmgT120I GGNCC 1 cut(s) 449
BmiI GGNNCC 1 cut(s) 157
BoxI GACNNNNGTC 1 cut(s) 347
BplI GAGNNNNNCTC 2 cut(s) 7, 39
BpmI CTGGAG 2 cut(s) 143, 424
Bsa29I ATCGAT 1 cut(s) 48
BsaBI GATNNNNATC 1 cut(s) 105
BsaJI CCNNGG 1 cut(s) 294
Bsc4I CCNNNNNNNGG 3 cut(s) 165, 240, 300
Bse118I RCCGGY 1 cut(s) 451
Bse3DI GCAATG 1 cut(s) 447
Bse8I GATNNNNATC 1 cut(s) 105
BseCI ATCGAT 1 cut(s) 48
BseDI CCNNGG 1 cut(s) 294
BseGI GGATG 1 cut(s) 34
BseJI GATNNNNATC 1 cut(s) 105
BseLI CCNNNNNNNGG 3 cut(s) 165, 240, 300
BseMI GCAATG 1 cut(s) 447
BseMII CTCAG 2 cut(s) 164, 325
BseRI GAGGAG 1 cut(s) 522
BseSI GKGCMC 1 cut(s) 376
BseX3I CGGCCG 1 cut(s) 231
BseXI GCAGC 1 cut(s) 424
BseYI CCCAGC 1 cut(s) 199
Bsh1236I CGCG 1 cut(s) 134
Bsh1285I CGRYCG 1 cut(s) 234
BshFI GGCC 2 cut(s) 233, 253
BshVI ATCGAT 1 cut(s) 48
BsiEI CGRYCG 1 cut(s) 234
BsiHKAI GWGCWC 1 cut(s) 376
BsiSI CCGG 2 cut(s) 183, 452
BslI CCNNNNNNNGG 3 cut(s) 165, 240, 300
BsmAI GTCTC 1 cut(s) 360
BsmBI CGTCTC 1 cut(s) 360
BsnI GGCC 2 cut(s) 233, 253
Bsp1286I GDGCHC 2 cut(s) 376, 420
Bsp143I GATC 5 cut(s) 68, 106, 269, 281, 288
BspACI CCGC 3 cut(s) 8, 134, 186
BspANI GGCC 2 cut(s) 233, 253
BspCNI CTCAG 2 cut(s) 165, 324
BspDI ATCGAT 1 cut(s) 48
BspFNI CGCG 1 cut(s) 134
BspLI GGNNCC 1 cut(s) 157
BspPI GGATC 1 cut(s) 76
BsrDI GCAATG 1 cut(s) 447
BsrFI RCCGGY 1 cut(s) 451
BssAI RCCGGY 1 cut(s) 451
BssECI CCNNGG 1 cut(s) 294
BssMI GATC 5 cut(s) 68, 106, 269, 281, 288
Bst4CI ACNGT 3 cut(s) 140, 295, 371
Bst6I CTCTTC 1 cut(s) 540
BstAPI GCANNNNNTGC 1 cut(s) 482
BstDEI CTNAG 3 cut(s) 173, 311, 319
BstDSI CCRYGG 1 cut(s) 294
BstF5I GGATG 1 cut(s) 34
BstFNI CGCG 1 cut(s) 134
BstKTI GATC 5 cut(s) 71, 109, 272, 284, 291
BstMAI GTCTC 1 cut(s) 360
BstMBI GATC 5 cut(s) 68, 106, 269, 281, 288
BstMCI CGRYCG 1 cut(s) 234
BstMWI GCNNNNNNNGC 2 cut(s) 399, 482
BstPAI GACNNNNGTC 1 cut(s) 347
BstSLI GKGCMC 1 cut(s) 376
BstUI CGCG 1 cut(s) 134
BstV1I GCAGC 1 cut(s) 424
BstX2I RGATCY 1 cut(s) 68
BstYI RGATCY 1 cut(s) 68
BstZI CGGCCG 1 cut(s) 231
Bsu15I ATCGAT 1 cut(s) 48
BsuRI GGCC 2 cut(s) 233, 253
BsuTUI ATCGAT 1 cut(s) 48
BtgI CCRYGG 1 cut(s) 294
BtsCI GGATG 1 cut(s) 34
Cfr10I RCCGGY 1 cut(s) 451
Cfr13I GGNCC 1 cut(s) 449
ClaI ATCGAT 1 cut(s) 48
CseI GACGC 1 cut(s) 50
CviAII CATG 1 cut(s) 38
DdeI CTNAG 3 cut(s) 173, 311, 319
DpnI GATC 5 cut(s) 70, 108, 271, 283, 290
DpnII GATC 5 cut(s) 68, 106, 269, 281, 288
EaeI YGGCCR 1 cut(s) 231
EagI CGGCCG 1 cut(s) 231
Eam1104I CTCTTC 1 cut(s) 540
EarI CTCTTC 1 cut(s) 540
EclXI CGGCCG 1 cut(s) 231
Eco24I GRGCYC 1 cut(s) 420
Eco47I GGWCC 1 cut(s) 449
Eco52I CGGCCG 1 cut(s) 231
Eco57I CTGAAG 1 cut(s) 507
EcoT38I GRGCYC 1 cut(s) 420
Esp3I CGTCTC 1 cut(s) 360
FaeI CATG 1 cut(s) 41
FaiI YATR 8 cut(s) 39, 65, 74, 250, 258, 335, 390, 471
FatI CATG 1 cut(s) 37
FauI CCCGC 1 cut(s) 179
Fnu4HI GCNGC 1 cut(s) 438
FokI GGATG 1 cut(s) 41
FriOI GRGCYC 1 cut(s) 420
Fsp4HI GCNGC 1 cut(s) 438
GluI GCNGC 1 cut(s) 438
GsaI CCCAGC 1 cut(s) 203
GsuI CTGGAG 2 cut(s) 143, 424
HaeIII GGCC 2 cut(s) 233, 253
HapII CCGG 2 cut(s) 183, 452
HgaI GACGC 1 cut(s) 50
Hin1II CATG 1 cut(s) 41
HincII GTYRAC 1 cut(s) 88
HindII GTYRAC 1 cut(s) 88
HinfI GANTC 3 cut(s) 169, 315, 406
HpaII CCGG 2 cut(s) 183, 452
HphI GGTGA 3 cut(s) 116, 152, 283
Hpy166II GTNNAC 2 cut(s) 88, 374
Hpy188I TCNGA 4 cut(s) 61, 174, 314, 380
Hpy188III TCNNGA 3 cut(s) 26, 122, 539
Hpy8I GTNNAC 2 cut(s) 88, 374
Hpy99I CGWCG 2 cut(s) 232, 384
HpyAV CCTTC 2 cut(s) 5, 500
HpyCH4III ACNGT 3 cut(s) 140, 295, 371
HpyCH4V TGCA 3 cut(s) 37, 374, 440
HpyF10VI GCNNNNNNNGC 2 cut(s) 399, 482
HpyF3I CTNAG 3 cut(s) 173, 311, 319
Hsp92II CATG 1 cut(s) 41
Kzo9I GATC 5 cut(s) 68, 106, 269, 281, 288
LmnI GCTCC 2 cut(s) 15, 535
Lsp1109I GCAGC 1 cut(s) 424
MaeIII GTNAC 2 cut(s) 274, 490
MalI GATC 5 cut(s) 70, 108, 271, 283, 290
MboI GATC 5 cut(s) 68, 106, 269, 281, 288
MboII GAAGA 4 cut(s) 155, 257, 515, 527
MflI RGATCY 1 cut(s) 68
MhlI GDGCHC 2 cut(s) 376, 420
MlyI GAGTC 3 cut(s) 178, 324, 415
MmeI TCCRAC 2 cut(s) 403, 427
MnlI CCTC 4 cut(s) 146, 168, 514, 543
MseI TTAA 1 cut(s) 550
MspI CCGG 2 cut(s) 183, 452
MvnI CGCG 1 cut(s) 134
MwoI GCNNNNNNNGC 2 cut(s) 399, 482
NdeII GATC 5 cut(s) 68, 106, 269, 281, 288
NlaIII CATG 1 cut(s) 41
NlaIV GGNNCC 1 cut(s) 157
PkrI GCNGC 1 cut(s) 439
PleI GAGTC 3 cut(s) 177, 323, 414
PpsI GAGTC 3 cut(s) 177, 323, 414
PshAI GACNNNNGTC 1 cut(s) 347
PspFI CCCAGC 1 cut(s) 199
PspN4I GGNNCC 1 cut(s) 157
PspPI GGNCC 1 cut(s) 449
PsuI RGATCY 1 cut(s) 68
SaqAI TTAA 1 cut(s) 550
SatI GCNGC 1 cut(s) 438
Sau3AI GATC 5 cut(s) 68, 106, 269, 281, 288
Sau96I GGNCC 1 cut(s) 449
SchI GAGTC 3 cut(s) 178, 324, 415
SduI GDGCHC 2 cut(s) 376, 420
SetI ASST 5 cut(s) 20, 157, 196, 325, 395
SinI GGWCC 1 cut(s) 449
SsiI CCGC 3 cut(s) 8, 134, 186
TaaI ACNGT 3 cut(s) 140, 295, 371
TaqI TCGA 2 cut(s) 48, 268
Tru1I TTAA 1 cut(s) 550
Tru9I TTAA 1 cut(s) 550
TseI GCWGC 1 cut(s) 437
TspDTI ATGAA 1 cut(s) 458
VneI GTGCAC 1 cut(s) 372
VpaK11BI GGWCC 1 cut(s) 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.