Rh3DG179100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0001941
Physical Location & Seq
Reverse (-)
15954972 .. 15955466
495 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG179100.1

Sequence Viewer

Length: 495 bp
ATGGCAGATCTTGGGCTGTTTGCTCTCTTTTTCGCTTGTCTGGGTGGTGTTTGTTCTGGTTTCTCTTCGATTTCTAGTGCAGAGATCTCTCCGTTGAGTGATATTATCGGATTCGGTGGTAGTACGGCTACGGGTCTCGGAGGAGCAGACTCGCCGGATCTGGTGGTGGAGGACCGAGTGTCAGTGCCGGTCCAATTTTCTTTTGGTTCGGGTTCGGAGGTAGGCGGCTTTTGTTGGGAGGATCCTGGTAGATGTTACAGTTTTCTCTATGGGTTGCCTTTTCCCGGCGGGGATGCTGATGTGATGGCGATTCGGTGGGTGCGGAAGGGGGTATTCCTCTGGCCGGATTGCGTGGTGTTGTGCCCCACTGGTAGCGCTTTGAATTGTGGTGTTGGTGACCGGTTTTGGGTCCCCGACGTTCTTCGATGCCAAGGTGGTATGGTAGCACGGGGATTGGTTGTGTCACCGGCGGCAGGGTCATTTGGCCAGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

16.94

Weight (kDa)

4.24

Isoelectric Point (pI)

42.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 225, 288, 322, 470
AclWI GGATC 3 cut(s) 165, 236, 249
AcoI YGGCCR 2 cut(s) 341, 484
AfaI GTAC 1 cut(s) 124
AfeI AGCGCT 1 cut(s) 376
AfiI CCNNNNNNNGG 4 cut(s) 284, 343, 406, 473
AgeI ACCGGT 1 cut(s) 399
AgsI TTSAA 1 cut(s) 382
AhdI GACNNNNNGTC 1 cut(s) 178
AjnI CCWGG 1 cut(s) 244
Alw26I GTCTC 1 cut(s) 140
AlwI GGATC 3 cut(s) 165, 236, 249
Aor51HI AGCGCT 1 cut(s) 376
AoxI GGCC 2 cut(s) 341, 484
AsiGI ACCGGT 1 cut(s) 399
AspLEI GCGC 1 cut(s) 377
AspS9I GGNCC 3 cut(s) 172, 190, 409
AsuC2I CCSGG 1 cut(s) 285
AsuHPI GGTGA 2 cut(s) 407, 456
AvaII GGWCC 3 cut(s) 172, 190, 409
BaeGI GKGCMC 1 cut(s) 365
BalI TGGCCA 1 cut(s) 486
BamHI GGATCC 1 cut(s) 241
BccI CCATC 1 cut(s) 298
BceAI ACGGC 1 cut(s) 141
BciT130I CCWGG 1 cut(s) 246
BcnI CCSGG 1 cut(s) 285
BcoDI GTCTC 1 cut(s) 140
BfaI CTAG 1 cut(s) 75
BfoI RGCGCY 1 cut(s) 378
BglII AGATCT 2 cut(s) 7, 84
BisI GCNGC 2 cut(s) 226, 471
BlsI GCNGC 2 cut(s) 227, 472
Bme1390I CCNGG 2 cut(s) 246, 285
Bme18I GGWCC 3 cut(s) 172, 190, 409
BmeRI GACNNNNNGTC 1 cut(s) 178
BmgT120I GGNCC 3 cut(s) 172, 190, 409
BmiI GGNNCC 3 cut(s) 243, 410, 411
BmrFI CCNGG 2 cut(s) 246, 285
BmsI GCATC 2 cut(s) 283, 416
BpuMI CCSGG 1 cut(s) 285
BsaI GGTCTC 1 cut(s) 140
BsaJI CCNNGG 1 cut(s) 430
BsaWI WCCGGW 1 cut(s) 399
Bsc4I CCNNNNNNNGG 4 cut(s) 284, 343, 406, 473
Bse118I RCCGGY 3 cut(s) 187, 399, 466
Bse1I ACTGG 1 cut(s) 373
BseBI CCWGG 1 cut(s) 246
BseDI CCNNGG 1 cut(s) 430
BseGI GGATG 1 cut(s) 298
BseLI CCNNNNNNNGG 4 cut(s) 284, 343, 406, 473
BseNI ACTGG 1 cut(s) 373
BseRI GAGGAG 1 cut(s) 156
BseSI GKGCMC 1 cut(s) 365
BsgI GTGCAG 1 cut(s) 99
BshFI GGCC 2 cut(s) 343, 486
BshTI ACCGGT 1 cut(s) 399
BsiSI CCGG 6 cut(s) 155, 188, 285, 344, 400, 467
BslFI GGGAC 1 cut(s) 395
BslI CCNNNNNNNGG 4 cut(s) 284, 343, 406, 473
BsmAI GTCTC 1 cut(s) 140
BsmFI GGGAC 1 cut(s) 395
BsnI GGCC 2 cut(s) 343, 486
Bso31I GGTCTC 1 cut(s) 140
Bsp1286I GDGCHC 1 cut(s) 365
Bsp143I GATC 4 cut(s) 7, 84, 157, 241
BspACI CCGC 4 cut(s) 225, 288, 322, 470
BspANI GGCC 2 cut(s) 343, 486
BspLI GGNNCC 3 cut(s) 243, 410, 411
BspPI GGATC 3 cut(s) 165, 236, 249
BspTNI GGTCTC 1 cut(s) 140
BsrFI RCCGGY 3 cut(s) 187, 399, 466
BsrI ACTGG 1 cut(s) 373
BssAI RCCGGY 3 cut(s) 187, 399, 466
BssECI CCNNGG 1 cut(s) 430
BssMI GATC 4 cut(s) 7, 84, 157, 241
BssT1I CCWWGG 1 cut(s) 430
Bst2UI CCWGG 1 cut(s) 246
Bst4CI ACNGT 1 cut(s) 260
Bst6I CTCTTC 1 cut(s) 70
BstEII GGTNACC 1 cut(s) 395
BstF5I GGATG 1 cut(s) 298
BstH2I RGCGCY 1 cut(s) 378
BstHHI GCGC 1 cut(s) 377
BstKTI GATC 4 cut(s) 10, 87, 160, 244
BstMAI GTCTC 1 cut(s) 140
BstMBI GATC 4 cut(s) 7, 84, 157, 241
BstNI CCWGG 1 cut(s) 246
BstPI GGTNACC 1 cut(s) 395
BstSCI CCNGG 2 cut(s) 244, 283
BstSLI GKGCMC 1 cut(s) 365
BstX2I RGATCY 4 cut(s) 7, 84, 157, 241
BstYI RGATCY 4 cut(s) 7, 84, 157, 241
BsuRI GGCC 2 cut(s) 343, 486
BtsCI GGATG 1 cut(s) 298
BtsIMutI CAGTG 2 cut(s) 189, 366
CfoI GCGC 1 cut(s) 377
Cfr10I RCCGGY 3 cut(s) 187, 399, 466
Cfr13I GGNCC 3 cut(s) 172, 190, 409
Csp6I GTAC 1 cut(s) 123
CspAI ACCGGT 1 cut(s) 399
CviJI RGCY 5 cut(s) 16, 128, 228, 343, 486
CviKI_1 RGCY 5 cut(s) 16, 128, 228, 343, 486
CviQI GTAC 1 cut(s) 123
DpnI GATC 4 cut(s) 9, 86, 159, 243
DpnII GATC 4 cut(s) 7, 84, 157, 241
DriI GACNNNNNGTC 1 cut(s) 178
EaeI YGGCCR 2 cut(s) 341, 484
Eam1104I CTCTTC 1 cut(s) 70
Eam1105I GACNNNNNGTC 1 cut(s) 178
EarI CTCTTC 1 cut(s) 70
Eco130I CCWWGG 1 cut(s) 430
Eco31I GGTCTC 1 cut(s) 140
Eco47I GGWCC 3 cut(s) 172, 190, 409
Eco47III AGCGCT 1 cut(s) 376
Eco91I GGTNACC 1 cut(s) 395
EcoO109I RGGNCCY 1 cut(s) 409
EcoO65I GGTNACC 1 cut(s) 395
EcoRII CCWGG 1 cut(s) 244
EcoT14I CCWWGG 1 cut(s) 430
ErhI CCWWGG 1 cut(s) 430
FaiI YATR 2 cut(s) 270, 440
FaqI GGGAC 1 cut(s) 395
FauI CCCGC 1 cut(s) 281
Fnu4HI GCNGC 2 cut(s) 226, 471
FokI GGATG 1 cut(s) 305
Fsp4HI GCNGC 2 cut(s) 226, 471
FspBI CTAG 1 cut(s) 75
GlaI GCGC 1 cut(s) 376
GluI GCNGC 2 cut(s) 226, 471
HaeII RGCGCY 1 cut(s) 378
HaeIII GGCC 2 cut(s) 343, 486
HapII CCGG 6 cut(s) 155, 188, 285, 344, 400, 467
HhaI GCGC 1 cut(s) 377
Hin6I GCGC 1 cut(s) 375
HinP1I GCGC 1 cut(s) 375
HinfI GANTC 3 cut(s) 111, 149, 310
HpaII CCGG 6 cut(s) 155, 188, 285, 344, 400, 467
HphI GGTGA 2 cut(s) 407, 456
Hpy188I TCNGA 3 cut(s) 110, 140, 217
Hpy99I CGWCG 1 cut(s) 419
HpyAV CCTTC 1 cut(s) 319
HpyCH4III ACNGT 1 cut(s) 260
HpyCH4IV ACGT 1 cut(s) 417
HpyCH4V TGCA 1 cut(s) 80
HpySE526I ACGT 1 cut(s) 417
HspAI GCGC 1 cut(s) 375
KflI GGGWCCC 1 cut(s) 409
Kzo9I GATC 4 cut(s) 7, 84, 157, 241
LmnI GCTCC 1 cut(s) 143
LweI GCATC 2 cut(s) 283, 416
MaeI CTAG 1 cut(s) 75
MaeII ACGT 1 cut(s) 417
MaeIII GTNAC 3 cut(s) 254, 395, 462
MalI GATC 4 cut(s) 9, 86, 159, 243
MboI GATC 4 cut(s) 7, 84, 157, 241
MboII GAAGA 2 cut(s) 57, 413
MflI RGATCY 4 cut(s) 7, 84, 157, 241
MhlI GDGCHC 1 cut(s) 365
MlsI TGGCCA 1 cut(s) 486
MluCI AATT 2 cut(s) 194, 382
MluNI TGGCCA 1 cut(s) 486
MlyI GAGTC 1 cut(s) 143
MnlI CCTC 5 cut(s) 134, 163, 211, 232, 347
Mox20I TGGCCA 1 cut(s) 486
MscI TGGCCA 1 cut(s) 486
Msp20I TGGCCA 1 cut(s) 486
MspI CCGG 6 cut(s) 155, 188, 285, 344, 400, 467
MspR9I CCNGG 2 cut(s) 246, 285
MvaI CCWGG 1 cut(s) 246
NciI CCSGG 1 cut(s) 285
NdeII GATC 4 cut(s) 7, 84, 157, 241
NlaIV GGNNCC 3 cut(s) 243, 410, 411
NmuCI GTSAC 2 cut(s) 395, 462
PfeI GAWTC 2 cut(s) 111, 310
PinAI ACCGGT 1 cut(s) 399
PkrI GCNGC 2 cut(s) 227, 472
PleI GAGTC 1 cut(s) 143
PpsI GAGTC 1 cut(s) 143
PpuMI RGGWCCY 1 cut(s) 409
Psp5II RGGWCCY 1 cut(s) 409
Psp6I CCWGG 1 cut(s) 244
PspEI GGTNACC 1 cut(s) 395
PspGI CCWGG 1 cut(s) 244
PspN4I GGNNCC 3 cut(s) 243, 410, 411
PspPI GGNCC 3 cut(s) 172, 190, 409
PspPPI RGGWCCY 1 cut(s) 409
PsuI RGATCY 4 cut(s) 7, 84, 157, 241
RsaI GTAC 1 cut(s) 124
RsaNI GTAC 1 cut(s) 123
SatI GCNGC 2 cut(s) 226, 471
Sau3AI GATC 4 cut(s) 7, 84, 157, 241
Sau96I GGNCC 3 cut(s) 172, 190, 409
SchI GAGTC 1 cut(s) 143
ScrFI CCNGG 2 cut(s) 246, 285
SduI GDGCHC 1 cut(s) 365
SetI ASST 3 cut(s) 222, 420, 436
SfaNI GCATC 2 cut(s) 283, 416
SgrAI CRCCGGYG 1 cut(s) 466
SinI GGWCC 3 cut(s) 172, 190, 409
Sse9I AATT 2 cut(s) 194, 382
SsiI CCGC 4 cut(s) 225, 288, 322, 470
SspMI CTAG 1 cut(s) 75
StyD4I CCNGG 2 cut(s) 244, 283
StyI CCWWGG 1 cut(s) 430
TaaI ACNGT 1 cut(s) 260
TaiI ACGT 1 cut(s) 420
TaqI TCGA 2 cut(s) 68, 424
TaqII GACCGA 1 cut(s) 189
TasI AATT 2 cut(s) 194, 382
TauI GCSGC 2 cut(s) 228, 473
TfiI GAWTC 2 cut(s) 111, 310
TscAI CASTG 2 cut(s) 189, 373
TseFI GTSAC 2 cut(s) 395, 462
Tsp45I GTSAC 2 cut(s) 395, 462
TspGWI ACGGA 1 cut(s) 81
TspRI CASTG 2 cut(s) 189, 373
VpaK11BI GGWCC 3 cut(s) 172, 190, 409
XcmI CCANNNNNNNNNTGG 1 cut(s) 200
XspI CTAG 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.