Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001941

Physical Location & Seq

Genomic Coordinates Forward (+)

64312680 .. 64313178

Gene Structure 499 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005005

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGAGAAACCTTTAGGCTTCAGCCTATTCATCTTTGTCTTCATTGTCTATGGAGGTAGTGCATCTTTGGAGAGGAGTTTGGGCGCTGCTGGGGCGGTGTCGGCGGGCCAAATTTCTGTTGGTACGAGTTCGGAGGTAGGCTGTGATTACTGGGAGAAGTGGGATCCGGGTAGAAGCCTTGGTGATCTCAGTGGGTCTCCTCTTCCCTGCGGTGTTGCTAAAGCGGTGGGGAATCGATGGGTACGAAACAGAGCTGTCCTCTGGCTGGATTGGGCGACGATGGTGGTGTGGCAGACGACGGGCCATCGTTTAGCGGCTTTACGGATATGGGGAGTGTCACTGGCGGCAAGGTCGTATGCCATATGCTATGGGGACTGGGAAATGATCCAGTGGACTCTGGGCTTAAGTTGGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

139

Amino Acids

15.11

Weight (kDa)

7.71

Isoelectric Point (pI)

27.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001941)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0242461
rosa_laevigata	RLG00000000198 RLG00000001395 RLG00000002534 RLG00000004260 RLG00000004509 RLG00000005005 RLG00000007730 RLG00000007778 RLG00000008977 RLG00000012806 RLG00000014111 RLG00000015644 RLG00000015853 RLG00000023399 RLG00000024480 RLG00000025907 RLG00000027839 RLG00000037045
rosa_multiflora	Rmu_sc0002184.1_g000017 Rmu_ssc0000281.1_g000033
rosa_roxburghii	Rroxscaffold_4G00320490 Rroxscaffold_5G00343060
rosa_rugosa	Rorug05G0168200 Rorug06G0037900 Rorug06G0190800
rosa_samantha	Rh2CG548800 Rh3CG231400 Rh3DG179100 Rh3DG231300 Rh3DG294200 Rh4DG182500 Rh4DG266400 Rh5AG258800 Rh5AG498800 Rh5CG543300 Rh5DG558400 Rh6BG482600 Rh6CG221300 Rh6CG487900 Rh6DG489100 Rh7AG193500 Rh7AG247400 Rh7BG033900 Rh7DG233300 Rh7DG253600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	95, 104, 210, 224, 314, 344
AclWI	GGATC	3 cut(s)	158, 171, 379
AcsI	RAATTY	1 cut(s)	111
AcuI	CTGAAG	1 cut(s)	4
AfaI	GTAC	2 cut(s)	124, 243
AfiI	CCNNNNNNNGG	1 cut(s)	265
AflII	CTTAAG	1 cut(s)	403
AluBI	AGCT	1 cut(s)	254
AluI	AGCT	1 cut(s)	254
Alw26I	GTCTC	1 cut(s)	201
AlwI	GGATC	3 cut(s)	158, 171, 379
AoxI	GGCC	2 cut(s)	106, 301
ApeKI	GCWGC	1 cut(s)	86
ApoI	RAATTY	1 cut(s)	111
AspLEI	GCGC	1 cut(s)	86
AspS9I	GGNCC	2 cut(s)	106, 301
AsuC2I	CCSGG	1 cut(s)	168
AsuHPI	GGTGA	1 cut(s)	194
BamHI	GGATCC	1 cut(s)	163
BbsI	GAAGAC	1 cut(s)	31
BbvI	GCAGC	1 cut(s)	73
BccI	CCATC	3 cut(s)	231, 274, 312
BcnI	CCSGG	1 cut(s)	168
BcoDI	GTCTC	1 cut(s)	201
BfoI	RGCGCY	1 cut(s)	87
BfrI	CTTAAG	1 cut(s)	403
BisI	GCNGC	3 cut(s)	87, 315, 345
BlsI	GCNGC	3 cut(s)	88, 316, 346
Bme1390I	CCNGG	1 cut(s)	168
BmgT120I	GGNCC	2 cut(s)	106, 301
BmiI	GGNNCC	1 cut(s)	165
BmrFI	CCNGG	1 cut(s)	168
BmrI	ACTGGG	2 cut(s)	160, 385
BmsI	GCATC	1 cut(s)	71
BmuI	ACTGGG	2 cut(s)	160, 385
BpiI	GAAGAC	1 cut(s)	31
BplI	GAGNNNNNCTC	2 cut(s)	243, 275
BpuMI	CCSGG	1 cut(s)	168
Bsa29I	ATCGAT	1 cut(s)	235
BsaI	GGTCTC	1 cut(s)	201
BsaJI	CCNNGG	1 cut(s)	178
Bsc4I	CCNNNNNNNGG	1 cut(s)	265
Bse1I	ACTGG	4 cut(s)	155, 345, 380, 388
BseCI	ATCGAT	1 cut(s)	235
BseDI	CCNNGG	1 cut(s)	178
BseLI	CCNNNNNNNGG	1 cut(s)	265
BseMII	CTCAG	1 cut(s)	202
BseNI	ACTGG	4 cut(s)	155, 345, 380, 388
BseRI	GAGGAG	2 cut(s)	88, 189
BseXI	GCAGC	1 cut(s)	73
BseYI	CCCAGC	1 cut(s)	89
BshFI	GGCC	2 cut(s)	108, 303
BshVI	ATCGAT	1 cut(s)	235
BsiSI	CCGG	1 cut(s)	167
BslFI	GGGAC	1 cut(s)	386
BslI	CCNNNNNNNGG	1 cut(s)	265
BsmAI	GTCTC	1 cut(s)	201
BsmFI	GGGAC	1 cut(s)	386
BsnI	GGCC	2 cut(s)	108, 303
Bso31I	GGTCTC	1 cut(s)	201
Bsp143I	GATC	3 cut(s)	163, 184, 384
BspACI	CCGC	6 cut(s)	95, 104, 210, 224, 314, 344
BspANI	GGCC	2 cut(s)	108, 303
BspCNI	CTCAG	1 cut(s)	201
BspDI	ATCGAT	1 cut(s)	235
BspLI	GGNNCC	1 cut(s)	165
BspPI	GGATC	3 cut(s)	158, 171, 379
BspTI	CTTAAG	1 cut(s)	403
BspTNI	GGTCTC	1 cut(s)	201
BsrI	ACTGG	4 cut(s)	155, 345, 380, 388
BssECI	CCNNGG	1 cut(s)	178
BssMI	GATC	3 cut(s)	163, 184, 384
BssT1I	CCWWGG	1 cut(s)	178
Bst6I	CTCTTC	1 cut(s)	207
BstAFI	CTTAAG	1 cut(s)	403
BstC8I	GCNNGC	1 cut(s)	106
BstDEI	CTNAG	1 cut(s)	188
BstH2I	RGCGCY	1 cut(s)	87
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	3 cut(s)	166, 187, 387
BstMAI	GTCTC	1 cut(s)	201
BstMBI	GATC	3 cut(s)	163, 184, 384
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 101
BstSCI	CCNGG	1 cut(s)	166
BstV1I	GCAGC	1 cut(s)	73
BstV2I	GAAGAC	1 cut(s)	31
BstX2I	RGATCY	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	163
Bsu15I	ATCGAT	1 cut(s)	235
BsuRI	GGCC	2 cut(s)	108, 303
BsuTUI	ATCGAT	1 cut(s)	235
BtsIMutI	CAGTG	3 cut(s)	196, 338, 395
Cac8I	GCNNGC	1 cut(s)	106
CfoI	GCGC	1 cut(s)	86
Cfr13I	GGNCC	2 cut(s)	106, 301
ClaI	ATCGAT	1 cut(s)	235
Csp6I	GTAC	2 cut(s)	123, 242
CviQI	GTAC	2 cut(s)	123, 242
DdeI	CTNAG	1 cut(s)	188
DpnI	GATC	3 cut(s)	165, 186, 386
DpnII	GATC	3 cut(s)	163, 184, 384
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
Eco130I	CCWWGG	1 cut(s)	178
Eco31I	GGTCTC	1 cut(s)	201
Eco57I	CTGAAG	1 cut(s)	4
EcoT14I	CCWWGG	1 cut(s)	178
ErhI	CCWWGG	1 cut(s)	178
FaiI	YATR	6 cut(s)	51, 328, 357, 362, 364, 369
FaqI	GGGAC	1 cut(s)	386
FauI	CCCGC	1 cut(s)	97
FauNDI	CATATG	1 cut(s)	362
Fnu4HI	GCNGC	3 cut(s)	87, 315, 345
Fsp4HI	GCNGC	3 cut(s)	87, 315, 345
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	3 cut(s)	87, 315, 345
GsaI	CCCAGC	1 cut(s)	93
HaeII	RGCGCY	1 cut(s)	87
HaeIII	GGCC	2 cut(s)	108, 303
HapII	CCGG	1 cut(s)	167
HhaI	GCGC	1 cut(s)	86
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HinfI	GANTC	2 cut(s)	232, 394
HpaII	CCGG	1 cut(s)	167
HphI	GGTGA	1 cut(s)	194
Hpy166II	GTNNAC	1 cut(s)	393
Hpy188I	TCNGA	1 cut(s)	133
Hpy8I	GTNNAC	1 cut(s)	393
Hpy99I	CGWCG	2 cut(s)	280, 301
HpyCH4V	TGCA	1 cut(s)	62
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 101
HpyF3I	CTNAG	1 cut(s)	188
HspAI	GCGC	1 cut(s)	84
Kzo9I	GATC	3 cut(s)	163, 184, 384
Lsp1109I	GCAGC	1 cut(s)	73
LweI	GCATC	1 cut(s)	71
MaeIII	GTNAC	1 cut(s)	336
MalI	GATC	3 cut(s)	165, 186, 386
MboI	GATC	3 cut(s)	163, 184, 384
MboII	GAAGA	2 cut(s)	31, 194
MflI	RGATCY	1 cut(s)	163
MluCI	AATT	1 cut(s)	111
MlyI	GAGTC	1 cut(s)	388
MnlI	CCTC	5 cut(s)	47, 66, 127, 210, 269
MseI	TTAA	1 cut(s)	404
MspCI	CTTAAG	1 cut(s)	403
MspI	CCGG	1 cut(s)	167
MspR9I	CCNGG	1 cut(s)	168
MwoI	GCNNNNNNNGC	2 cut(s)	92, 101
NciI	CCSGG	1 cut(s)	168
NdeI	CATATG	1 cut(s)	362
NdeII	GATC	3 cut(s)	163, 184, 384
NlaIV	GGNNCC	1 cut(s)	165
NmuCI	GTSAC	1 cut(s)	336
PcsI	WCGNNNNNNNCGW	1 cut(s)	241
PfeI	GAWTC	1 cut(s)	232
PkrI	GCNGC	3 cut(s)	88, 316, 346
PleI	GAGTC	1 cut(s)	388
PpsI	GAGTC	1 cut(s)	388
PspFI	CCCAGC	1 cut(s)	89
PspN4I	GGNNCC	1 cut(s)	165
PspPI	GGNCC	2 cut(s)	106, 301
PsuI	RGATCY	1 cut(s)	163
RsaI	GTAC	2 cut(s)	124, 243
RsaNI	GTAC	2 cut(s)	123, 242
SaqAI	TTAA	1 cut(s)	404
SatI	GCNGC	3 cut(s)	87, 315, 345
Sau3AI	GATC	3 cut(s)	163, 184, 384
Sau96I	GGNCC	2 cut(s)	106, 301
SchI	GAGTC	1 cut(s)	388
ScrFI	CCNGG	1 cut(s)	168
SetI	ASST	5 cut(s)	13, 58, 138, 256, 353
SfaNI	GCATC	1 cut(s)	71
SmlI	CTYRAG	1 cut(s)	403
SmoI	CTYRAG	1 cut(s)	403
Sse9I	AATT	1 cut(s)	111
SsiI	CCGC	6 cut(s)	95, 104, 210, 224, 314, 344
StyD4I	CCNGG	1 cut(s)	166
StyI	CCWWGG	1 cut(s)	178
TaqI	TCGA	1 cut(s)	235
TasI	AATT	1 cut(s)	111
TauI	GCSGC	2 cut(s)	317, 347
TfiI	GAWTC	1 cut(s)	232
Tru1I	TTAA	1 cut(s)	404
Tru9I	TTAA	1 cut(s)	404
TscAI	CASTG	3 cut(s)	196, 345, 395
TseFI	GTSAC	1 cut(s)	336
TseI	GCWGC	1 cut(s)	86
Tsp45I	GTSAC	1 cut(s)	336
TspDTI	ATGAA	2 cut(s)	19, 31
TspGWI	ACGGA	1 cut(s)	337
TspRI	CASTG	3 cut(s)	196, 345, 395
Vha464I	CTTAAG	1 cut(s)	403
XapI	RAATTY	1 cut(s)	111
XcmI	CCANNNNNNNNNTGG	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.