RLG00000002534

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001941
Physical Location & Seq
Forward (+)
35888770 .. 35890990
2221 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002534

Sequence Viewer

Length: 408 bp
ATGAGTGATATTCGAGGTGATCGAGGTCGTGATAGTGGAGTGGCGGTGGCCATGGCTGAAGCGGGGTTGGTTTTGGTGGCTTCGACCTATTCATCTTTGTCTTCGTTGTCTTCAGAGGCAGTGCAGCTTTGGAGAGGACTTTGGGAGGTGTTAGCTGGCCAAATTTCTGTTTGTACGAGTTCGGAGGTAGGCGGTGATTACTGGGAGAAGTGGGATCTGGGTAGAAGCTTTCATGATCTCAGTGGGTCTCCTCTTCCCGGTGGTGTTGCTGAAGTGGTGGGGATTCAGTGGGTGCAAAATGGGGCTGTCCTCTGGTCGGATTGCTCGACGGTGTGGGTGTCGTACCCCACTGGTGGATTACTTTTGGCTGGTGTTGGAGTCCGGGTTTGGGTCCTCGACGTTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

14.27

Weight (kDa)

4.37

Isoelectric Point (pI)

33.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 44, 62, 192
AclWI GGATC 1 cut(s) 222
AcoI YGGCCR 2 cut(s) 48, 157
AcsI RAATTY 1 cut(s) 162
AcuI CTGAAG 3 cut(s) 78, 96, 291
AfaI GTAC 2 cut(s) 175, 344
AfiI CCNNNNNNNGG 4 cut(s) 257, 316, 353, 388
AluBI AGCT 3 cut(s) 127, 155, 228
AluI AGCT 3 cut(s) 127, 155, 228
Alw26I GTCTC 1 cut(s) 252
AlwI GGATC 1 cut(s) 222
AoxI GGCC 2 cut(s) 48, 157
ApeKI GCWGC 1 cut(s) 124
ApoI RAATTY 1 cut(s) 162
AspS9I GGNCC 1 cut(s) 391
AsuC2I CCSGG 2 cut(s) 258, 383
AsuHPI GGTGA 2 cut(s) 29, 206
AvaII GGWCC 1 cut(s) 391
BalI TGGCCA 2 cut(s) 50, 159
BbsI GAAGAC 2 cut(s) 93, 102
BbvI GCAGC 1 cut(s) 136
BcnI CCSGG 2 cut(s) 258, 383
BcoDI GTCTC 1 cut(s) 252
BisI GCNGC 1 cut(s) 125
BlsI GCNGC 1 cut(s) 126
Bme1390I CCNGG 2 cut(s) 258, 383
Bme18I GGWCC 1 cut(s) 391
BmgT120I GGNCC 1 cut(s) 391
BmiI GGNNCC 1 cut(s) 392
BmrFI CCNGG 2 cut(s) 258, 383
BmrI ACTGGG 1 cut(s) 211
BmuI ACTGGG 1 cut(s) 211
BpiI GAAGAC 2 cut(s) 93, 102
BpuMI CCSGG 2 cut(s) 258, 383
BsaI GGTCTC 1 cut(s) 252
BsaJI CCNNGG 1 cut(s) 51
BsaXI ACNNNNNCTCC 4 cut(s) 30, 60, 369, 399
Bsc4I CCNNNNNNNGG 4 cut(s) 257, 316, 353, 388
Bse1I ACTGG 2 cut(s) 206, 355
BseDI CCNNGG 1 cut(s) 51
BseLI CCNNNNNNNGG 4 cut(s) 257, 316, 353, 388
BseMII CTCAG 1 cut(s) 253
BseNI ACTGG 2 cut(s) 206, 355
BseRI GAGGAG 1 cut(s) 240
BseXI GCAGC 1 cut(s) 136
BsgI GTGCAG 1 cut(s) 143
BshFI GGCC 2 cut(s) 50, 159
BsiSI CCGG 2 cut(s) 258, 382
BslI CCNNNNNNNGG 4 cut(s) 257, 316, 353, 388
BsmAI GTCTC 1 cut(s) 252
BsnI GGCC 2 cut(s) 50, 159
Bso31I GGTCTC 1 cut(s) 252
Bsp143I GATC 3 cut(s) 19, 214, 235
Bsp19I CCATGG 1 cut(s) 51
BspACI CCGC 3 cut(s) 44, 62, 192
BspANI GGCC 2 cut(s) 50, 159
BspCNI CTCAG 1 cut(s) 252
BspHI TCATGA 1 cut(s) 232
BspLI GGNNCC 1 cut(s) 392
BspPI GGATC 1 cut(s) 222
BspTNI GGTCTC 1 cut(s) 252
BsrI ACTGG 2 cut(s) 206, 355
BssECI CCNNGG 1 cut(s) 51
BssMI GATC 3 cut(s) 19, 214, 235
BssT1I CCWWGG 1 cut(s) 51
Bst4CI ACNGT 1 cut(s) 331
Bst6I CTCTTC 1 cut(s) 258
BstC8I GCNNGC 1 cut(s) 157
BstDEI CTNAG 1 cut(s) 239
BstDSI CCRYGG 1 cut(s) 51
BstKTI GATC 3 cut(s) 22, 217, 238
BstMAI GTCTC 1 cut(s) 252
BstMBI GATC 3 cut(s) 19, 214, 235
BstSCI CCNGG 2 cut(s) 256, 381
BstV1I GCAGC 1 cut(s) 136
BstV2I GAAGAC 2 cut(s) 93, 102
BstX2I RGATCY 1 cut(s) 214
BstYI RGATCY 1 cut(s) 214
BsuRI GGCC 2 cut(s) 50, 159
BtgI CCRYGG 1 cut(s) 51
BtsI GCAGTG 1 cut(s) 126
BtsIMutI CAGTG 4 cut(s) 126, 247, 293, 348
Cac8I GCNNGC 1 cut(s) 157
CciI TCATGA 1 cut(s) 232
Cfr13I GGNCC 1 cut(s) 391
Csp6I GTAC 2 cut(s) 174, 343
CviAII CATG 2 cut(s) 52, 233
CviJI RGCY 9 cut(s) 50, 56, 80, 127, 155, 159, 228, 305, 368
CviKI_1 RGCY 9 cut(s) 50, 56, 80, 127, 155, 159, 228, 305, 368
CviQI GTAC 2 cut(s) 174, 343
DdeI CTNAG 1 cut(s) 239
DpnI GATC 3 cut(s) 21, 216, 237
DpnII GATC 3 cut(s) 19, 214, 235
EaeI YGGCCR 2 cut(s) 48, 157
Eam1104I CTCTTC 1 cut(s) 258
EarI CTCTTC 1 cut(s) 258
Eco130I CCWWGG 1 cut(s) 51
Eco31I GGTCTC 1 cut(s) 252
Eco47I GGWCC 1 cut(s) 391
Eco57I CTGAAG 3 cut(s) 78, 96, 291
EcoO109I RGGNCCY 1 cut(s) 391
EcoT14I CCWWGG 1 cut(s) 51
ErhI CCWWGG 1 cut(s) 51
FaeI CATG 2 cut(s) 55, 236
FaiI YATR 2 cut(s) 53, 234
FatI CATG 2 cut(s) 51, 232
FauI CCCGC 1 cut(s) 55
Fnu4HI GCNGC 1 cut(s) 125
Fsp4HI GCNGC 1 cut(s) 125
GluI GCNGC 1 cut(s) 125
HaeIII GGCC 2 cut(s) 50, 159
HapII CCGG 2 cut(s) 258, 382
Hin1II CATG 2 cut(s) 55, 236
HindIII AAGCTT 1 cut(s) 226
HinfI GANTC 2 cut(s) 283, 378
HpaII CCGG 2 cut(s) 258, 382
HphI GGTGA 2 cut(s) 29, 206
Hpy188I TCNGA 3 cut(s) 115, 184, 319
Hpy188III TCNNGA 2 cut(s) 29, 233
Hpy99I CGWCG 2 cut(s) 331, 401
HpyCH4III ACNGT 1 cut(s) 331
HpyCH4IV ACGT 1 cut(s) 399
HpyCH4V TGCA 2 cut(s) 124, 295
HpyF3I CTNAG 1 cut(s) 239
HpySE526I ACGT 1 cut(s) 399
Hsp92II CATG 2 cut(s) 55, 236
Kzo9I GATC 3 cut(s) 19, 214, 235
LpnPI CCDG 8 cut(s) 141, 187, 203, 271, 298, 336, 354, 395
Lsp1109I GCAGC 1 cut(s) 136
MaeII ACGT 1 cut(s) 399
MalI GATC 3 cut(s) 21, 216, 237
MboI GATC 3 cut(s) 19, 214, 235
MboII GAAGA 3 cut(s) 93, 102, 245
MflI RGATCY 1 cut(s) 214
MlsI TGGCCA 2 cut(s) 50, 159
MluCI AATT 1 cut(s) 162
MluNI TGGCCA 2 cut(s) 50, 159
MlyI GAGTC 1 cut(s) 387
MmeI TCCRAC 2 cut(s) 297, 355
MnlI CCTC 9 cut(s) 8, 17, 109, 128, 139, 178, 261, 320, 404
Mox20I TGGCCA 2 cut(s) 50, 159
MscI TGGCCA 2 cut(s) 50, 159
Msp20I TGGCCA 2 cut(s) 50, 159
MspI CCGG 2 cut(s) 258, 382
MspR9I CCNGG 2 cut(s) 258, 383
NciI CCSGG 2 cut(s) 258, 383
NcoI CCATGG 1 cut(s) 51
NdeII GATC 3 cut(s) 19, 214, 235
NlaIII CATG 2 cut(s) 55, 236
NlaIV GGNNCC 1 cut(s) 392
PagI TCATGA 1 cut(s) 232
PcsI WCGNNNNNNNCGW 2 cut(s) 19, 323
PfeI GAWTC 1 cut(s) 283
PkrI GCNGC 1 cut(s) 126
PleI GAGTC 1 cut(s) 386
PpsI GAGTC 1 cut(s) 386
PpuMI RGGWCCY 1 cut(s) 391
Psp5II RGGWCCY 1 cut(s) 391
PspN4I GGNNCC 1 cut(s) 392
PspPI GGNCC 1 cut(s) 391
PspPPI RGGWCCY 1 cut(s) 391
PsuI RGATCY 1 cut(s) 214
RsaI GTAC 2 cut(s) 175, 344
RsaNI GTAC 2 cut(s) 174, 343
SatI GCNGC 1 cut(s) 125
Sau3AI GATC 3 cut(s) 19, 214, 235
Sau96I GGNCC 1 cut(s) 391
SchI GAGTC 1 cut(s) 387
ScrFI CCNGG 2 cut(s) 258, 383
SetI ASST 9 cut(s) 19, 28, 89, 129, 150, 157, 189, 230, 402
SinI GGWCC 1 cut(s) 391
Sse9I AATT 1 cut(s) 162
SsiI CCGC 3 cut(s) 44, 62, 192
StyD4I CCNGG 2 cut(s) 256, 381
StyI CCWWGG 1 cut(s) 51
TaaI ACNGT 1 cut(s) 331
TaiI ACGT 1 cut(s) 402
TaqI TCGA 5 cut(s) 13, 22, 83, 326, 396
TasI AATT 1 cut(s) 162
TfiI GAWTC 1 cut(s) 283
TscAI CASTG 4 cut(s) 126, 247, 293, 355
TseI GCWGC 1 cut(s) 124
TspDTI ATGAA 2 cut(s) 81, 221
TspRI CASTG 4 cut(s) 126, 247, 293, 355
VpaK11BI GGWCC 1 cut(s) 391
XapI RAATTY 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.